BAC Information

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BAC

Clone NameB6Ng01-297E24
Chromosome17 (Build37)10 (Build37)
Map Location 25,617,780 - 25,618,42875,488,545 - 75,488,667
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4
Downstream geneSstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297E24.bB6Ng01-297E24.g
ACCGA092700GA092701
length649800
definitionB6Ng01-297E24.b B6Ng01-297E24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,617,780 - 25,618,428)(75,488,545 - 75,488,667)
sequence
gaattctcgactgttttcatcagccaggtcaagcagagacgctccagtaa
gggggcctgcagggcctgacacaaggtgattcagtcactagggctctgtc
ttcacacctcctctgactgagtcactgcagctgacaatgggtgacagcag
ctgcccccagaggggcctctgtgtccactaggtgctgagctggtgtgagc
tgtcatcagtagccagcagtcatggctgcccttagcttccaccagcctgt
gctcgctcacctgtggctagcactcaagagttatcagagacacacattct
gggtctctccctcacctcctgtcctcttcctggccagccgagtagatgct
cttaaggggagccaggaatgtggctggaccccagctacaccaagctacag
gatgaggctaggctgccactgcacactagctatgtgcctcccccaacaag
cagcttggctcagggacactcagcccttggggtagtgtgtgttgtgttca
gggactgagcggggataaggggagtcctatgtgggtttgaccttggatca
ccaaggattgttggaacacccccataagtcactcctcctagggtagctca
ggggttcaaacctctgcctggatgattggggtatgattatgggggaaga
gaattccaggacagccagagctatacagagaaaccctgcctcaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaagtataaaagcaactggaaatagta
caagtacaaatctaataaatgtaagacggctccatctgtgggaaactgta
aatcacacgagaaagagagaagtgatggagggtgtggcgagctaagccac
agccgtgtcctcgaagagctgcgcatatcagtgaaaccacaatcaaccat
ctcagccacacacacacagagtctgtctgtaggtcctgacggactgattc
tgacagcacacatgaactgtaatggaaacagaagagccaatgtaatcaga
agaggaagagacttgtggcattcagggtgaccatctccaggattcactgg
acaaatctacactaatcaagatgtggtggctcgaatgtgcttggcccagg
gagtggcactatttggaggtgtggccctgttggagtaggtgtgtcactgt
gggtgtgggctttaaaactttcatcctagctggctggaagccagtattct
gctaacagccttcagatgaagatgtagacctctcagttcctcctgcacca
tgcctgcctggatgctgccatgctcctgccttgatactggattgaatctc
tgaacctgtaagccagccccaattaaatgttgtctttataaagagccacc
ttggttatggcgtctgttcaaagcactaaaaccctaactaagacacaaga
taaggagaactggggagagggaagaaaaagaggaggaagaggaggaagaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25617780_25618428
seq2: B6Ng01-297E24.b_49_697

seq1  GAATTCTCGACTGTTTTCATCAGCCAGGTCAAGCAGAGACGCTCCAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGACTGTTTTCATCAGCCAGGTCAAGCAGAGACGCTCCAGTAA  50

seq1  GGGGGCCTGCAGGGCCTGACACAAGGTGATTCAGTCACTAGGGCTCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCTGCAGGGCCTGACACAAGGTGATTCAGTCACTAGGGCTCTGTC  100

seq1  TTCACACCTCCTCTGACTGAGTCACTGCAGCTGACAATGGGTGACAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCTCCTCTGACTGAGTCACTGCAGCTGACAATGGGTGACAGCAG  150

seq1  CTGCCCCCAGAGGGGCCTCTGTGTCCACTAGGTGCTGAGCTGGTGTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCAGAGGGGCCTCTGTGTCCACTAGGTGCTGAGCTGGTGTGAGC  200

seq1  TGTCATCAGTAGCCAGCAGTCATGGCTGCCCTTAGCTTCCACCAGCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCAGTAGCCAGCAGTCATGGCTGCCCTTAGCTTCCACCAGCCTGT  250

seq1  GCTCGCTCACCTGTGGCTAGCACTCAAGAGTTATCAGAGACACACATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCTCACCTGTGGCTAGCACTCAAGAGTTATCAGAGACACACATTCT  300

seq1  GGGTCTCTCCCTCACCTCCTGTCCTCTTCCTGGCCAGCCGAGTAGATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTCCCTCACCTCCTGTCCTCTTCCTGGCCAGCCGAGTAGATGCT  350

seq1  CTTAAGGGGAGCCAGGAATGTGGCTGGACCCCAGCTACACCAAGCTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGGGAGCCAGGAATGTGGCTGGACCCCAGCTACACCAAGCTACAG  400

seq1  GATGAGGCTAGGCTGCCACTGCACACTAGCTATGTGCCTCCCCCAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGCTAGGCTGCCACTGCACACTAGCTATGTGCCTCCCCCAACAAG  450

seq1  CAGCTTGGCTCAGGGACACTCAGCCCTTGGGGTAGTGTGTGTTGTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGCTCAGGGACACTCAGCCCTTGGGGTAGTGTGTGTTGTGTTCA  500

seq1  GGGACTGAGCGGGGATAAGGGGAGTCCTATGTGGGTTTGACCTTGGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGAGCGGGGATAAGGGGAGTCCTATGTGGGTTTGACCTTGGATCA  550

seq1  CCAAGGATTGTTGGAACACCCCCATAAGTCACTCCTCCTAGGGTAGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATTGTTGGAACACCCCCATAAGTCACTCCTCCTAGGGTAGCTCA  600

seq1  GGGGTTCAAACCTCTGCCTGGATGATTGGGGTATGATTATGGGGGAAGA  649
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCAAACCTCTGCCTGGATGATTGGGGTATGATTATGGGGGAAGA  649

seq1: chr10_75488545_75488667
seq2: B6Ng01-297E24.g_73_341

seq1  TTCCAGGACAGCCAGGGCTATATAGAGAAACCCTGTCTCAAAAAAAAAAA  50
      ||||||||||||||| |||||| |||||||||||| ||||||||||||||
seq2  TTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGCCTCAAAAAAAAAAA  50

seq1  AAAAAAAAAAGAAGAAGAGGAGGAGGAAGAAGAAGGAAGAAGGAAGA-AA  99
      |||||||||| || || |  |  | | | || ||| ||   | || |  |
seq2  AAAAAAAAAAAAAAAAAA--AAAAAGTATAA-AAGCAACTGGAAATAGTA  97

seq1  CAACAACACA-CACACACA---CAGAGT----------------------  123
      |||  ||| | |  | | |    |||                        
seq2  CAAGTACAAATCTAATAAATGTAAGACGGCTCCATCTGTGGGAAACTGTA  147

seq1  --------------------------------------------------  123
                                                        
seq2  AATCACACGAGAAAGAGAGAAGTGATGGAGGGTGTGGCGAGCTAAGCCAC  197

seq1  --------------------------------------------------  123
                                                        
seq2  AGCCGTGTCCTCGAAGAGCTGCGCATATCAGTGAAACCACAATCAACCAT  247

seq1  ----------------------  123
                            
seq2  CTCAGCCACACACACACAGAGT  269