BAC Information

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BAC

Clone NameB6Ng01-297K02
Chromosome14 (Build37)10 (Build37)
Map Location 101,943,779 - 101,944,932105,317,723 - 105,317,861
singlet/doubletsingletsinglet
Overlap geneTbc1d4
Upstream geneEG668684, 1700110M21Rik, LOC100043421, LOC382936
Downstream geneCommd6, Uchl3, Lmo7, LOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297K02.bB6Ng01-297K02.g
ACCGA092942GA092943
length1,154293
definitionB6Ng01-297K02.b B6Ng01-297K02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,943,779 - 101,944,932)(105,317,723 - 105,317,861)
sequence
gaattcatttgtagcttcctcccctgctttaacatacccccaatggatag
cgaagagaattaggtccttgttgatgctttatgacctattctagtttatt
ccactattccacaatttatttcaaaataactctaagggaagcttcccaat
tgagcaatcaaaattttaatttttactttctattgattctttgtgaattt
cacatcatgcactcccaaccccactcatccttcaaatctgctctctacct
ttgcaccctcaagaagaaaagaaacaaagtaaaaataaattacacataga
gaagtttagaaaatagaacaaaacaaaacaatcttacaccggaagctaca
gagtgtcacacaatcaaagttttaagtagtggtagcgaacaaaaccacca
attccctgtgaattattcttctactatcagcaaagaatacaatcaactgt
tttctagattccagcatttttatcagtccagttagtaaatttatcaaact
ctataaaaattctcatttaagaaaggttgggggactggagcaggacaggt
ctcaacagtatacaaaggttagggtgatgtttcttgttctcttcttctcc
tcagatgaccctaatgagttgtgccccaaataaaatagaagtcagaggtc
aaactatgaatagaccacacacatggctagattgagtttaagaaggtggt
catgacacgctacatcaaattagtgcctttgtgggatgaaaagaactata
ttaaatatatgccattttgttttagagacactacatggaaattaaaggca
aaaattacttctgcagatctacaggtagtattcacagcctacattctaag
caaagatataaaatgcttcagccaattttgaatttcacagcactcacata
tacacaaatccacgtgacattggctttaccagaacaggcgtaaagatgct
gagtgtccttcagatttggtcaggccacaaattcaacagcaaatagctca
atgctctactctgcaacgaagcttgcttacggacttaaagaccagtatgg
tggggagaatatgcatatttaaattccaatgcagaatagaaaaaaggaca
cgttacaatctttccactctctcagtgtaacatacttaagtggactggtt
ccca

acttctagtccagacctttgaggtagaaagacacacacttttgatctaga
tctggaagctgcaaggcacacctttagtctgggctataccttctgctcag
agcctatctctagagagaacactgaagaaggaagctcgtgctttttgctc
actttctcagtcctaccaagtccgttccttcactggtattaggaccctac
ttcttcagaatttcagcacctcctgaagaccacagagagacacacagccc
tatggactgagcaacttcaatgttcttggactttctgttcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_101943779_101944932
seq2: B6Ng01-297K02.b_52_1205

seq1  GAATTCATTTGTAGCTTCCTCCCCTGCTTTAACATACCCCCAATGGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTAGCTTCCTCCCCTGCTTTAACATACCCCCAATGGATAG  50

seq1  CGAAGAGAATTAGGTCCTTGTTGATGCTTTATGACCTATTCTAGTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAGAATTAGGTCCTTGTTGATGCTTTATGACCTATTCTAGTTTATT  100

seq1  CCACTATTCCACAATTTATTTCAAAATAACTCTAAGGGAAGCTTCCCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATTCCACAATTTATTTCAAAATAACTCTAAGGGAAGCTTCCCAAT  150

seq1  TGAGCAATCAAAATTTTAATTTTTACTTTCTATTGATTCTTTGTGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATCAAAATTTTAATTTTTACTTTCTATTGATTCTTTGTGAATTT  200

seq1  CACATCATGCACTCCCAACCCCACTCATCCTTCAAATCTGCTCTCTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATGCACTCCCAACCCCACTCATCCTTCAAATCTGCTCTCTACCT  250

seq1  TTGCACCCTCAAGAAGAAAAGAAACAAAGTAAAAATAAATTACACATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCCTCAAGAAGAAAAGAAACAAAGTAAAAATAAATTACACATAGA  300

seq1  GAAGTTTAGAAAATAGAACAAAACAAAACAATCTTACACCGGAAGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTAGAAAATAGAACAAAACAAAACAATCTTACACCGGAAGCTACA  350

seq1  GAGTGTCACACAATCAAAGTTTTAAGTAGTGGTAGCGAACAAAACCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCACACAATCAAAGTTTTAAGTAGTGGTAGCGAACAAAACCACCA  400

seq1  ATTCCCTGTGAATTATTCTTCTACTATCAGCAAAGAATACAATCAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTGTGAATTATTCTTCTACTATCAGCAAAGAATACAATCAACTGT  450

seq1  TTTCTAGATTCCAGCATTTTTATCAGTCCAGTTAGTAAATTTATCAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGATTCCAGCATTTTTATCAGTCCAGTTAGTAAATTTATCAAACT  500

seq1  CTATAAAAATTCTCATTTAAGAAAGGTTGGGGGACTGGAGCAGGACAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAATTCTCATTTAAGAAAGGTTGGGGGACTGGAGCAGGACAGGT  550

seq1  CTCAACAGTATACAAAGGTTAGGGTGATGTTTCTTGTTCTCTTCTTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGTATACAAAGGTTAGGGTGATGTTTCTTGTTCTCTTCTTCTCC  600

seq1  TCAGATGACCCTAATGAGTTGTGCCCCAAATAAAATAGAAGTCAGAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGACCCTAATGAGTTGTGCCCCAAATAAAATAGAAGTCAGAGGTC  650

seq1  AAACTATGAATAGACCACACACATGGCTAGATTGAGTTTAAGAAGGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGAATAGACCACACACATGGCTAGATTGAGTTTAAGAAGGTGGT  700

seq1  CATGACACGCTACATCAAATTAGTGCCTTTGTGGGATGAAAAGAACTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACGCTACATCAAATTAGTGCCTTTGTGGGATGAAAAGAACTATA  750

seq1  TTAAATATATGCCATTTTGTTTTAGAGACACTACATGGAAATTAAAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATATGCCATTTTGTTTTAGAGACACTACATGGAAATTAAAGGCA  800

seq1  AAAATTACTTCTGCAGATCTACAGGTAGTATTCACAGCCTACATTCTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACTTCTGCAGATCTACAGGTAGTATTCACAGCCTACATTCTAAG  850

seq1  CAAAGATATAAAATGCTTCAGCCAATTTTGAATTTCACAGCACTCACATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATATAAAATGCTTCAGCCAATTTTGAATTTCACAGCACTCACATA  900

seq1  TACACAAATCCACGTGACATTGGCTTTACCAGAACAGGCGTAAAGATGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAATCCACGTGACATTGGCTTTACCAGAACAGGCGTAAAGATGCT  950

seq1  GAGTGTCCTTCAGATTT-GTCAGGCCACAAATTCAACAGCAAATAGCTCA  999
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGTGTCCTTCAGATTTGGTCAGGCCACAAATTCAACAGCAAATAGCTCA  1000

seq1  ATGCTCTACTCTGCAACGAAGCCTTTGCTTACCGGACTTAAAAGACCAGT  1049
      ||||||||||||||||||||||  ||||||| ||||||| ||||||||||
seq2  ATGCTCTACTCTGCAACGAAGC--TTGCTTA-CGGACTT-AAAGACCAGT  1046

seq1  ATG--TGGGAG-ATATGCCAATAATTTAAATTCCAATGCAG-ATAGAAAA  1095
      |||   ||||| ||||||  || |||||||||||||||||| ||||||||
seq2  ATGGTGGGGAGAATATGC--AT-ATTTAAATTCCAATGCAGAATAGAAAA  1093

seq1  AA-GACACGTACCATTCTTTCCA--CTCTCAGTGTAACATACTAAAGTGG  1142
      || |||||||  || ||||||||  |||||||||||||||||| ||||||
seq2  AAGGACACGTTACAATCTTTCCACTCTCTCAGTGTAACATACTTAAGTGG  1143

seq1  AACTGGTTCCCA  1154
       |||||||||||
seq2  -ACTGGTTCCCA  1154


seq1: chr10_105317723_105317861
seq2: B6Ng01-297K02.g_233_365 (reverse)

seq1  TATGAACAGAAAGTCCAAGAGTCCAGTAGTTATTCAGTCCATGGGGCTAC  50
      ||||||||||||||||||||     | ||||  ||||||||| |||||  
seq2  TATGAACAGAAAGTCCAAGAACATTGAAGTTGCTCAGTCCATAGGGCTGT  50

seq1  ATATCGCATCTGGTATTCTGGTATTGAGTATATTGTGAAATTCTGAAGAA  100
       | || | ||||      |||| || || |  |  |||||||||||||||
seq2  GTGTCTC-TCTG------TGGTCTTCAGGAGGTGCTGAAATTCTGAAGAA  93

seq1  GTAGGCT-CTGATGCTAGTGAAGGAATGGACTTGCTAGGA  139
      ||||| | || || | |||||||||| ||||||| |||||
seq2  GTAGGGTCCTAATACCAGTGAAGGAACGGACTTGGTAGGA  133


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