BAC Information

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BAC

Clone NameB6Ng01-299H12
Chromosome10 (Build37)
Map Location 101,578,385 - 101,700,791
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299H12.bB6Ng01-299H12.g
ACCGA094302GA094303
length1,0671,138
definitionB6Ng01-299H12.b B6Ng01-299H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,699,707 - 101,700,791)(101,578,385 - 101,579,528)
sequence
gaattcagttaatgatttagattctgaaatcagtaatttcttataatttc
ttattaatattttatatatttttataaattataatttcttataaatattt
acttacatttttataaatgttaatttaaatataattatatcactttctcc
tccttttcttacctgcatatccacctaatctcttctctccaacatcaatt
tcataagctgataccctcttcttcccttattgcctataggtgcatgtatg
aacatatacctgatttattttactactctgttgtgaaatgagttcattat
aaaaagtttacagagaacaacttagagtgggtcattgcagtcttcctaat
catttcataatgattctcctaacttaacattctatacttatccaaaaaag
aaaacagaaagtctggggcgagaaagatggctcagtgtataaagaagctt
gctgccaaacctcagagtctgagcttcatccttgggccctgtatggtgga
cagagagaaccaaccttagcaagttgttctttaatgtgcacatgcttctc
ctggtccacatgacatgtatacacacaaacacacacaaccacactcacac
atacactcaaatgctcacacacacacacacatacacacacacatacacac
acacacacacacacacacacacacacacagaataaataaatgaatgaatg
aataagaaaatatattgtttaaagtacaaagtttaattttgaattgcaca
acatcccctggaaaagaaaactacaaagaagctaacgtagaaaactccca
tgtgatgatatcttagaaaataattctttttttctttttttttgagacag
gatttctctgtttggcccgggcagtcctggaactcactttatagaccagg
ctggccttgaactcagaattctgcctgctcttcctcccaagtgctgggat
taaagcatgtaccaccatttgcctggtggaaatatctgacaagcatctga
gtatattatatttttccatatgcatttgagatatttaccttactgatcca
tattatctctgagataa

gaattcactgattatttttaataccaatttcatttttttcttaatttttc
ttaattttgattttaataatatgtatcttaatatgaagacataaaatttg
ggtatattaatgagacagtatatgattttttaaaataattttattgtttc
tttgaattgatgtatttttaaagccaatgtggttattattttaatagctt
cctaagtctaagcaatgttgtgggaaataaggaagcacaggcctgtgtag
tttgtaaactaagaagaacaaaatataaattataattgatgtttgattga
gaagtagcatgcatgaatggacaatacatctttcaaaagacatggattat
ttaaagaaaatacaaatgctagtacacacagcatattctttgatgaaata
ttggtaaaagaggactcagaggtactcaaatcaacatagattatttccat
ttttcttggttgcccattgtaactagatgataaaacgcctactgctaaat
attctgcctatgtaggttcctaatgtttttgtttttgttttttttttaat
aatataatgacgatatcttaatgggtaggagaagacaatcagcgtctgct
ataatttgtttttaagagtaaacaatatgtttttccttcagaaagctctt
ttcttgatgacttgcagggtaatgtgaagcttctgtcaattcctaaaatc
aaaagagaaatactaataaaaaaaaaaaaaaaaaaacatgaatgcacagg
gagccaaacaacctctcacacggggtgctctgtaaatgtgagccaactca
cacaaatagttaggcatcaggagagatggagctgagccaggagagaagaa
cacatgtccaaaaaaagaaagtttgctcagcaaactgaaatacaagccaa
aactgaaaagtttgagtcaagtctactgcaagagaatatgccgtccttta
tgtatttgttaattttaatctcacaagacaaaggtttattagatacattt
cagtagcccattgggttttttttttgcatatttctagttctcactcgatt
atccctcagaaatacaataaaacaaatgtaaacaattttgtaataatcca
tgtgaggtgttacctagtcaatataaacttccggtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_101699707_101700791
seq2: B6Ng01-299H12.b_46_1112 (reverse)

seq1  TTATCTTCAGAGATAATATTTGATACCAGTAGTGTAAATATCTCCAAATT  50
      ||||| |||||||||||| | |||  |||||  |||||||||||  || |
seq2  TTATC-TCAGAGATAATA-TGGAT--CAGTAAGGTAAATATCTC--AAAT  44

seq1  GCATATTGAAAAATATAATATACTCAGATGCCTTTGTTCAAGAATTATTT  100
      |||||| ||||||||||||||||||||||||  ||||   |||  || ||
seq2  GCATATGGAAAAATATAATATACTCAGATGC--TTGT--CAGA--TA-TT  87

seq1  TCAACCAGGC-AATGGTGGTACATGCCTTTAATCCCAGCACTTGGGAGGA  149
      || ||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  TCCACCAGGCAAATGGTGGTACATG-CTTTAATCCCAGCACTTGGGAGGA  136

seq1  AGAGGCAGGCAGAATTCTGAGTTCAAGGCCAGCCTGGTCTATAAAGTGAG  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGA-GCAGGCAGAATTCTGAGTTCAAGGCCAGCCTGGTCTATAAAGTGAG  185

seq1  TTCCAGGACTGCCCGGGCCAAACAGAGAAATCCTGTCTCAAAAAAAAAAA  249
      |||||||||||||||||||||||||||||||||||||||    |||||||
seq2  TTCCAGGACTGCCCGGGCCAAACAGAGAAATCCTGTCTC----AAAAAAA  231

seq1  AAAAAAAAAAGAATTATTTTCTAAGATATCATCACATGGGAGTTTTCTAC  299
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAGAATTATTTTCTAAGATATCATCACATGGGAGTTTTCTAC  281

seq1  GTTAGCTTCTTTGTAGTTTTCTTTTCCAGGGGATGTTGTGCAATTCAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTCTTTGTAGTTTTCTTTTCCAGGGGATGTTGTGCAATTCAAAA  331

seq1  TTAAACTTTGTACTTTAAACAATATATTTTCTTATTCATTCATTCATTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTTGTACTTTAAACAATATATTTTCTTATTCATTCATTCATTTA  381

seq1  TTTATTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGT  431

seq1  GTGTATGTGTGTGTGTGTGTGAGCATTTGAGTGTATGTGTGAGTGTGGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGTGTGTGTGTGTGAGCATTTGAGTGTATGTGTGAGTGTGGTT  481

seq1  GTGTGTGTTTGTGTGTATACATGTCATGTGGACCAGGAGAAGCATGTGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTTTGTGTGTATACATGTCATGTGGACCAGGAGAAGCATGTGCA  531

seq1  CATTAAAGAACAACTTGCTAAGGTTGGTTCTCTCTGTCCACCATACAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGAACAACTTGCTAAGGTTGGTTCTCTCTGTCCACCATACAGGG  581

seq1  CCCAAGGATGAAGCTCAGACTCTGAGGTTTGGCAGCAAGCTTCTTTATAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGATGAAGCTCAGACTCTGAGGTTTGGCAGCAAGCTTCTTTATAC  631

seq1  ACTGAGCCATCTTTCTCGCCCCAGACTTTCTGTTTTCTTTTTTGGATAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCATCTTTCTCGCCCCAGACTTTCTGTTTTCTTTTTTGGATAAG  681

seq1  TATAGAATGTTAAGTTAGGAGAATCATTATGAAATGATTAGGAAGACTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATGTTAAGTTAGGAGAATCATTATGAAATGATTAGGAAGACTGC  731

seq1  AATGACCCACTCTAAGTTGTTCTCTGTAAACTTTTTATAATGAACTCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCCACTCTAAGTTGTTCTCTGTAAACTTTTTATAATGAACTCATT  781

seq1  TCACAACAGAGTAGTAAAATAAATCAGGTATATGTTCATACATGCACCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAGAGTAGTAAAATAAATCAGGTATATGTTCATACATGCACCTA  831

seq1  TAGGCAATAAGGGAAGAAGAGGGTATCAGCTTATGAAATTGATGTTGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAATAAGGGAAGAAGAGGGTATCAGCTTATGAAATTGATGTTGGAG  881

seq1  AGAAGAGATTAGGTGGATATGCAGGTAAGAAAAGGAGGAGAAAGTGATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGATTAGGTGGATATGCAGGTAAGAAAAGGAGGAGAAAGTGATAT  931

seq1  AATTATATTTAAATTAACATTTATAAAAATGTAAGTAAATATTTATAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATTTAAATTAACATTTATAAAAATGTAAGTAAATATTTATAAGA  981

seq1  AATTATAATTTATAAAAATATATAAAATATTAATAAGAAATTATAAGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAATTTATAAAAATATATAAAATATTAATAAGAAATTATAAGAAA  1031

seq1  TTACTGATTTCAGAATCTAAATCATTAACTGAATTC  1085
      ||||||||||||||||||||||||||||||||||||
seq2  TTACTGATTTCAGAATCTAAATCATTAACTGAATTC  1067


seq1: chr10_101578385_101579528
seq2: B6Ng01-299H12.g_64_1201

seq1  GAATTCACTGATTATTTTTAATACCAATTTCATTTTTTTCTTAATTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGATTATTTTTAATACCAATTTCATTTTTTTCTTAATTTTTC  50

seq1  TTAATTTTGATTTTAATAATATGTATCTTAATATGAAGACATAAAATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTGATTTTAATAATATGTATCTTAATATGAAGACATAAAATTTG  100

seq1  GGTATATTAATGAGACAGTATATGATTTTTTAAAATAATTTTATTGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTAATGAGACAGTATATGATTTTTTAAAATAATTTTATTGTTTC  150

seq1  TTTGAATTGATGTATTTTTAAAGCCAATGTGGTTATTATTTTAATAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTGATGTATTTTTAAAGCCAATGTGGTTATTATTTTAATAGCTT  200

seq1  CCTAAGTCTAAGCAATGTTGTGGGAAATAAGGAAGCACAGGCCTGTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTCTAAGCAATGTTGTGGGAAATAAGGAAGCACAGGCCTGTGTAG  250

seq1  TTTGTAAACTAAGAAGAACAAAATATAAATTATAATTGATGTTTGATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAACTAAGAAGAACAAAATATAAATTATAATTGATGTTTGATTGA  300

seq1  GAAGTAGCATGCATGAATGGACAATACATCTTTCAAAAGACATGGATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCATGCATGAATGGACAATACATCTTTCAAAAGACATGGATTAT  350

seq1  TTAAAGAAAATACAAATGCTAGTACACACAGCATATTCTTTGATGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAATACAAATGCTAGTACACACAGCATATTCTTTGATGAAATA  400

seq1  TTGGTAAAAGAGGACTCAGAGGTACTCAAATCAACATAGATTATTTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAAGAGGACTCAGAGGTACTCAAATCAACATAGATTATTTCCAT  450

seq1  TTTTCTTGGTTGCCCATTGTAACTAGATGATAAAACGCCTACTGCTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGGTTGCCCATTGTAACTAGATGATAAAACGCCTACTGCTAAAT  500

seq1  ATTCTGCCTATGTAGGTTCCTAATGTTTTTGTTTTTGTTTTTTTTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCTATGTAGGTTCCTAATGTTTTTGTTTTTGTTTTTTTTTTAAT  550

seq1  AATATAATGACGATATCTTAATGGGTAGGAGAAGACAATCAGCGTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATGACGATATCTTAATGGGTAGGAGAAGACAATCAGCGTCTGCT  600

seq1  ATAATTTGTTTTTAAGAGTAAACAATATGTTTTTCCTTCAGAAAGCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGTTTTTAAGAGTAAACAATATGTTTTTCCTTCAGAAAGCTCTT  650

seq1  TTCTTGATGACTTGCAGGGTAATGTGAAGCTTCTGTCAATTCCTAAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATGACTTGCAGGGTAATGTGAAGCTTCTGTCAATTCCTAAAATC  700

seq1  AAAAGAGAAATACTAAT--AAAAAAAAAAAAAAAAACATGAATGCACAGG  748
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  AAAAGAGAAATACTAATAAAAAAAAAAAAAAAAAAACATGAATGCACAGG  750

seq1  GAGCCAAACAACCTCTCACACGGGGTGCTCTGTAAATGTGAGCCAACTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAACAACCTCTCACACGGGGTGCTCTGTAAATGTGAGCCAACTCA  800

seq1  CACAAATAGTTAGGCATCAGGAGAGATGGAGCTGAGCCAGGAGAGAAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATAGTTAGGCATCAGGAGAGATGGAGCTGAGCCAGGAGAGAAGAA  850

seq1  CACATGTCC-AAAAAAGAAAGTTTGCTCAGCAAACTGAAATACAAGCCAA  897
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  CACATGTCCAAAAAAAGAAAGTTTGCTCAGCAAACTGAAATACAAGCC-A  899

seq1  AAACTGAAAAGTTTGAGTCAAGTCTACTGCAAAGAGAATATGCCGTCCTT  947
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAACTGAAAAGTTTGAGTCAAGTCTACTGC-AAGAGAATATGCCGTCCTT  948

seq1  TATGTATTTGTTTAATTTTAATCTCACAAGACAAA-GTTTATTAGATACA  996
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  TATGTATTTG-TTAATTTTAATCTCACAAGACAAAGGTTTATTAGATACA  997

seq1  TTTCAGTAGCCAATTGG--TTTTTTTTTGCATATTTCTAGTTTCTTCAAC  1044
      ||||||||||| |||||  ||||||||||||||||||||| ||||   ||
seq2  TTTCAGTAGCCCATTGGGTTTTTTTTTTGCATATTTCTAG-TTCT--CAC  1044

seq1  TCGATTATCCCTCAAGGAAATACAAATAAAAACAAAATGTTAAAACAATT  1094
      ||||||||||||||  ||||||| |||||||   ||||||  |||||| |
seq2  TCGATTATCCCTCA--GAAATAC-AATAAAA--CAAATGT--AAACAA-T  1086

seq1  TTTGTAATA--TCATGTGAGTGTG-TACATAGACAATATAAA-TTCCGTG  1140
      |||||||||   |||||||| ||| ||| ||| ||||||||| ||||| |
seq2  TTTGTAATAATCCATGTGAG-GTGTTACCTAGTCAATATAAACTTCCG-G  1134

seq1  TGGT  1144
      ||||
seq2  TGGT  1138


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