MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-301F19
Chromosome	10 (Build37)
Map Location	89,946,049 - 90,067,358
singlet/doublet	doublet
Overlap gene	Anks1b
Upstream gene	Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039, LOC544719
Downstream gene	Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Link	Open Mouse BAC browser

Click to get alignment info.

name	Nr1h4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20186 MGI:1352464
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG627532 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627532 MGI:3648025
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 34 ESTs

name	Slc17a8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216227 MGI:3039629
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Scyl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213326 MGI:1289172
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Actr6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67019 MGI:1914269
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E030041M21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75089 MGI:2442888
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E530015N03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380650 MGI:2686401
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Anks1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77531 MGI:1924781
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 89 ESTs, 2 Proteins

name	LOC100043039 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043039
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 70 ESTs, 1 Protein

name	LOC544719 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:544719
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 117 ESTs, 3 Proteins pseudo : _no_value

name	Apaf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11783 MGI:1306796
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	1200009F10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67454 MGI:1914704
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Slc25a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18674 MGI:1353498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmpo (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21917 MGI:106920
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 6 mRNAs

name	LOC100041769 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041769
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins

name	Nr1h4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6677830 GeneID:20186 MGI:1352464
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 1, group H, member 4 transcript_id : NM_009108.1

name	EG627532 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261106 GeneID:627532 MGI:3648025
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 34 ESTs product : predicted gene, EG627532 transcript_id : XM_892204.3

name	Slc17a8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328517 GeneID:216227 MGI:3039629
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 transcript_id : NM_182959.2

name	Scyl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130768 GeneID:213326 MGI:1289172
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SCY1-like 2 (S. cerevisiae) transcript_id : NM_198021.2

name	Actr6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361108 GeneID:67019 MGI:1914269
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ARP6 actin-related protein 6 homolog (yeast) transcript_id : NM_025914.2

name	E030041M21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34536812 GeneID:75089 MGI:2442888
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E030041M21 gene transcript_id : NM_029166.1

name	E530015N03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261003 GeneID:380650 MGI:2686401
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA E530015N03 gene transcript_id : XM_001476869.1

name	Anks1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261107 GeneID:77531 MGI:1924781
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 89 ESTs, 2 Proteins product : ankyrin repeat and sterile alpha motif domain containing 1B, transcript variant 2 transcript_id : XM_001003400.2

name	LOC100043039 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261111 GeneID:100043039
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 70 ESTs, 1 Protein product : similar to SEC61 gamma transcript_id : XM_001480161.1

name	Apaf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347470 GeneID:11783 MGI:1306796
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apoptotic peptidase activating factor 1 transcript_id : NM_009684.2

name	Apaf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347464 GeneID:11783 MGI:1306796
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apoptotic peptidase activating factor 1 transcript_id : NM_001042558.1

name	1200009F10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121582656 GeneID:67454 MGI:1914704
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1200009F10 gene transcript_id : NM_027078.2

name	1200009F10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121583480 GeneID:67454 MGI:1914704
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1200009F10 gene transcript_id : NM_026166.2

name	Slc25a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376554 GeneID:18674 MGI:1353498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 transcript_id : NM_133668.3

name	Tmpo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121949768 GeneID:21917 MGI:106920
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thymopoietin transcript_id : NM_001080132.1

name	Tmpo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121949762 GeneID:21917 MGI:106920
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thymopoietin transcript_id : NM_001080131.1

name	Tmpo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121949766 GeneID:21917 MGI:106920
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thymopoietin transcript_id : NM_001080130.1

name	Tmpo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121949764 GeneID:21917 MGI:106920
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thymopoietin transcript_id : NM_001080129.1

name	Tmpo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121949778 GeneID:21917 MGI:106920
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thymopoietin transcript_id : NM_001080134.1

name	Tmpo (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121949759 GeneID:21917 MGI:106920
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thymopoietin transcript_id : NM_011605.2

name	LOC100041769 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261009 GeneID:100041769
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins product : similar to protein translation factor sui1 homolog transcript_id : XM_001476977.1

name	Nr1h4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677831 CCDS:CCDS24116.1 GeneID:20186 MGI:1352464
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008206 - bile acid metabolism [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation function : orphan nuclear receptor note : farnesoid X receptor; retinoid X receptor interacting protein 14 product : nuclear receptor subfamily 1, group H, member 4 protein_id : NP_033134.1

name	EG627532 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83027605 GeneID:627532 MGI:3648025
definition	codon_start : 1 product : similar to Zinc finger and BTB domain containing 5 protein_id : XP_897297.1

name	Slc17a8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33695072 CCDS:CCDS24117.1 GeneID:216227 MGI:3039629
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0030672 - synaptic vesicle membrane [Evidence IDA] GO_function : GO:0005313 - L-glutamate transporter activity [Evidence IDA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0015813 - glutamate transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : vesicular glutamate transporter-3 protein_id : NP_892004.1

name	Scyl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37574121 GeneID:213326 MGI:1289172
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : D10Ertd802e protein protein_id : NP_932138.1

name	Actr6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313172 CCDS:CCDS24118.1 GeneID:67019 MGI:1914269
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] codon_start : 1 product : actin-related protein 6 protein_id : NP_080190.1

name	E030041M21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34536813 GeneID:75089 MGI:2442888
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC75089 protein_id : NP_083442.1

name	E530015N03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261004 GeneID:380650 MGI:2686401
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476919.1

name	Anks1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388543 GeneID:77531 MGI:1924781
definition	codon_start : 1 product : ankyrin repeat and sterile alpha motif domain containing 1B isoform 2 protein_id : XP_001003400.1

name	LOC100043039 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261112 GeneID:100043039
definition	codon_start : 1 product : similar to SEC61 gamma protein_id : XP_001480211.1

name	Apaf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347465 GeneID:11783 MGI:1306796
definition	GO_component : GO:0005829 - cytosol [Evidence TAS] [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0016505 - apoptotic protease activator activity [Evidence IPI]; GO:0005524 - ATP binding [Evidence IEA]; GO:0004274 - dipeptidyl-peptidase IV activity [Evidence IEA]; GO:0042802 - identical protein binding [Evidence IPI]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007420 - brain development [Evidence IMP]; GO:0006919 - caspase activation [Evidence TAS]; GO:0006952 - defense response [Evidence IEA]; GO:0007275 - development [Evidence IMP]; GO:0030900 - forebrain development [Evidence IMP]; GO:0001843 - neural tube closure [Evidence IMP]; GO:0002217 - physiological defense response [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0042981 - regulation of apoptosis [Evidence IEA] codon_start : 1 note : forebrain overgrowth product : apoptotic protease activating factor 1 protein_id : NP_001036023.1

name	Apaf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347471 GeneID:11783 MGI:1306796
definition	GO_component : GO:0005829 - cytosol [Evidence TAS] [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0016505 - apoptotic protease activator activity [Evidence IPI]; GO:0005524 - ATP binding [Evidence IEA]; GO:0004274 - dipeptidyl-peptidase IV activity [Evidence IEA]; GO:0042802 - identical protein binding [Evidence IPI]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007420 - brain development [Evidence IMP]; GO:0006919 - caspase activation [Evidence TAS]; GO:0006952 - defense response [Evidence IEA]; GO:0007275 - development [Evidence IMP]; GO:0030900 - forebrain development [Evidence IMP]; GO:0001843 - neural tube closure [Evidence IMP]; GO:0002217 - physiological defense response [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0042981 - regulation of apoptosis [Evidence IEA] codon_start : 1 note : forebrain overgrowth product : apoptotic protease activating factor 1 protein_id : NP_033814.2

name	1200009F10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21630263 CCDS:CCDS24119.1 GeneID:67454 MGI:1914704
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0010165 - response to X-ray [Evidence ISS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : IKK interacting protein isoform 2 protein_id : NP_081354.1

name	1200009F10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121583481 GeneID:67454 MGI:1914704
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0010165 - response to X-ray [Evidence ISS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : IKK interacting protein isoform 1 protein_id : NP_080442.2

name	Slc25a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526818 CCDS:CCDS24121.1 GeneID:18674 MGI:1353498
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IEA] [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : phosphate carrier, mitochondrial; solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3 product : solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 protein_id : NP_598429.1

name	Tmpo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121949769 GeneID:21917 MGI:106920
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0045449 - regulation of transcription [Evidence IDA] codon_start : 1 note : isoform beta is encoded by transcript variant 2; lamina-associated polypeptide 2 product : thymopoietin isoform beta protein_id : NP_001073601.1

name	Tmpo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121949763 GeneID:21917 MGI:106920
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0045449 - regulation of transcription [Evidence IDA] codon_start : 1 note : isoform gamma is encoded by transcript variant 5; lamina-associated polypeptide 2 product : thymopoietin isoform gamma protein_id : NP_001073600.1

name	Tmpo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121949767 GeneID:21917 MGI:106920
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0045449 - regulation of transcription [Evidence IDA] codon_start : 1 note : isoform delta is encoded by transcript variant 4; lamina-associated polypeptide 2 product : thymopoietin isoform delta protein_id : NP_001073599.1

name	Tmpo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121949765 GeneID:21917 MGI:106920
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0045449 - regulation of transcription [Evidence IDA] codon_start : 1 note : isoform epsilon is encoded by transcript variant 3; lamina-associated polypeptide 2 product : thymopoietin isoform epsilon protein_id : NP_001073598.1

name	Tmpo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121949779 GeneID:21917 MGI:106920
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0045449 - regulation of transcription [Evidence IDA] codon_start : 1 note : isoform zeta is encoded by transcript variant 6; lamina-associated polypeptide 2 product : thymopoietin isoform zeta protein_id : NP_001073603.1

name	Tmpo (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121949760 CCDS:CCDS24122.1 GeneID:21917 MGI:106920
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0045449 - regulation of transcription [Evidence IDA] codon_start : 1 note : isoform alpha is encoded by transcript variant 1; lamina-associated polypeptide 2 product : thymopoietin isoform alpha protein_id : NP_035735.2

name	LOC100041769 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261010 GeneID:100041769
definition	codon_start : 1 product : similar to protein translation factor sui1 homolog protein_id : XP_001477027.1

name	LOC544719 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261108 GeneID:544719
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 117 ESTs, 3 Proteins product : similar to FERM domain containing 6 pseudo : _no_value transcript_id : XR_034566.1

clone name	MSMg01-132J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536I15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-454E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165L24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-336C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068L05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-470J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091K02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-301F19.b	B6Ng01-301F19.g
ACC	GA095692	GA095693
length	1,107	247
definition	B6Ng01-301F19.b	B6Ng01-301F19.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(89,946,049 - 89,947,144)	(90,067,112 - 90,067,358)
sequence	gaattcatgagcttaatgtgccatctacttgatggtctgtaaggatgagc attaaaataaataaaagataactattaactgttcttccatgaattgctta aaatgatacctctcaccactctgtgctttggtgatattcatttcaatcac aaagaaacatcgaagagctttgaatagcggtgcaacaggagtgtacttcc attatagagaacaatggagccccattggagaacatgaacaggaggaagct caggcttgcatcaaggagaatagttagggaactttcattgttaccaggct tggcaggacaaggacctgaatgaggacagcatgggtggacaacaagttca cacacttgtcacattccagagatgagtctgggtactaggactcaatggtt aaccaataaaatcattgtctttaaaaaaaagaaaagaaagaaaaaaaaat atatagagagatgatatagatagatagatagatagatagatagatagata gataggtagatagatagacagacatatgcatatacatcatatacacacac tgtagtgagaggaatggtgtgcaatgagaaaaaaaatgtttgtaaactta agtaaataagaaaatgaaaattacagagtgacctaaagagatgggaggct gtgagagatgcacaggtaaggttagaaatgatggttagaattagaataag cctctgggatggaaaggtcctgagtcttcagtaatgagcaggaacccagt tgtggataggagagaatgaagcagttcgatttttagagacgtcttaaaag taaactctgatgctccgagatattgactagggaacacagaaggaagaacc cagggctgcctcattaggactctctattaggacttcaaacctcattgacc ggcataaccggtgtctctttcagttccatatagccctggcttcatggcca tttctcaatatccattaattcagccgcatggtctccgtttagacattgga tattatagcctatcccttttatggaaatgtactgctcacaggttctttgt caatgcaaatcctcatcttcaataatttttctcctctaatggaaacattg gcccatt	aggaccctttgtaggttaagaagaatgttgccactgatcctcacacacag ccgtaaggcctttcctttcctctttaaaaggaaagtattgcaaataccca gtgttatctgagaattaaaaagatatcatatgtttctgctggtgaagata aaatatgtatgatgttactaacacaagaactaccttctgacaccacataa gaaatttgcaagggggaggaggaagaggatggggatgaagtggaaga
quality values	Open. Hide. 58 26 24 25 58 20 16 36 58 58 58 58 58 54 52 54 47 49 49 54 62 47 32 62 36 35 62 62 62 62 46 26 37 37 28 38 51 36 56 62 62 62 47 62 47 44 62 62 62 62 62 59 59 62 62 49 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 62 59 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 49 49 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 47 54 62 62 62 49 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 38 49 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 52 58 58 54 53 58 54 58 54 54 58 58 58 52 58 54 58 58 58 54 58 54 58 58 58 47 58 58 54 58 58 58 58 58 49 58 52 58 52 58 58 54 58 54 49 54 58 58 51 58 50 58 58 51 49 58 58 51 58 54 51 51 50 58 51 58 58 32 58 58 58 58 49 58 58 41 38 58 41 58 52 58 49 54 58 58 58 58 52 40 58 50 46 50 58 47 49 58 58 50 58 58 58 47 39 51 58 58 58 41 42 58 41 58 54 54 58 35 50 58 47 48 54 51 58 58 42 41 51 40 39 39 40 58 58 39 27 58 50 54 53 52 53 51 39 53 39 39 29 50 53 39 52 38 29 46 40 52 51 21 38 12 52 50 40 50 58 58 40 53 39 30 58 51 12 46 32 35 49 42 42 53 49 23 39 53 37 53 44 38 52 54 39 41 32 38 54 50 35 19 54 37 33 54 21 13 27 16 35 54 39 40 54 21 31 42 42 53 39 23 30 31 33 31 34 53 53 25 31 27 25 49 40 41 10 54 28 30 31 35 51 44 38 31 20 40 26 32 34 54 53 19 54 29 53 42 40 53 41 38 31 45 32 19 37 40 32 32 14 6 49 51 53 32 31 24 47 24 31 29 39 34 32 32 45 41 53 53 36 33 35 41 51 28 40 41 32 33 24 20 9 21 31 45 36 37 26 51 24 31 18 26 31 42 45 28 29 30 29 18 51 51 29 31 30 21 32 30 32 46 28 9 19 22 35 26 33 18 12 40 9 43 11 46 22 24 30 42 41 42 26 34 27 37 34 31 18 13 22 32 32 34 34 43 11 14 19 39 8 4 11 18 21 19 21 30 36 46 9 38 11 27 14 11 35 19 30 31 21 33 15 27 12 14 27 21 10 12 17 31 44 23 31 32 32 14 21 25 41 36 21 7 7 5 24 22 11 14 10 11 31 31 23 16 37 18 20 21 18 15 26 27 20 36 15 10 21 21 15 27 28 32 8 9 23 14 8 8 8 9 25 14 30 19 33 15 17 32 11 7 8 21 14 19 17 21 10 22 31 24 22 24 21 16 5 30 14 6 23 7 4 5 10 9 10 13 18 9 8 23 7 8 10 27 16 21 28 15 12 19 13 14 25 12 28 15 5 21 27 9 6 18 7 15 3 3 3 3 5 10 9 19 20 28 10 7 17 13 20 6 9 18 6 9 15 14 32 18 4 3 3 7 9 5 5 5 5 28 12 3 8 23 14 14 7 2 3 5 12 6 11 4 5 7 5 4 11 12 4 6 11 17 6 16 10 16 11 9 17 5 17 16 7 23 20 8 22 4 7 16 10 3 12 12 8 16 23	Open. Hide. 59 59 62 59 43 59 59 56 43 33 48 28 40 49 62 62 59 62 62 62 62 62 62 62 59 59 59 62 62 59 62 59 59 59 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 49 62 46 62 62 62 62 62 62 35 47 62 62 62 62 47 54 62 62 62 62 62 62 62 62 62 26 10

Alignment Information

BAC End 1

BAC End 2

seq1: chr10_89946049_89947144
seq2: B6Ng01-301F19.b_47_1153

seq1  GAATTCATGAGCTTAATGTGCCATCTACTTGATGGTCTGTAAGGATGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGCTTAATGTGCCATCTACTTGATGGTCTGTAAGGATGAGC  50

seq1  ATTAAAATAAATAAAAGATAACTATTAACTGTTCTTCCATGAATTGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAAATAAAAGATAACTATTAACTGTTCTTCCATGAATTGCTTA  100

seq1  AAATGATACCTCTCACCACTCTGTGCTTTGGTGATATTCATTTCAATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATACCTCTCACCACTCTGTGCTTTGGTGATATTCATTTCAATCAC  150

seq1  AAAGAAACATCGAAGAGCTTTGAATAGCGGTGCAACAGGAGTGTACTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACATCGAAGAGCTTTGAATAGCGGTGCAACAGGAGTGTACTTCC  200

seq1  ATTATAGAGAACAATGGAGCCCCATTGGAGAACATGAACAGGAGGAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGAGAACAATGGAGCCCCATTGGAGAACATGAACAGGAGGAAGCT  250

seq1  CAGGCTTGCATCAAGGAGAATAGTTAGGGAACTTTCATTGTTACCAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGCATCAAGGAGAATAGTTAGGGAACTTTCATTGTTACCAGGCT  300

seq1  TGGCAGGACAAGGACCTGAATGAGGACAGCATGGGTGGACAACAAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGACAAGGACCTGAATGAGGACAGCATGGGTGGACAACAAGTTCA  350

seq1  CACACTTGTCACATTCCAGAGATGAGTCTGGGTACTAGGACTCAATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTGTCACATTCCAGAGATGAGTCTGGGTACTAGGACTCAATGGTT  400

seq1  AACCAATAAAATCATTGTCTTTAAAAAAAAGAAAAGAAAGAAAAAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATAAAATCATTGTCTTTAAAAAAAAGAAAAGAAAGAAAAAAAAAT  450

seq1  ATATAGAGAGATGATATAGATAGATAGATAGATAGATAGATAGATAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAGAGATGATATAGATAGATAGATAGATAGATAGATAGATAGATA  500

seq1  GATAGGTAGATAGATAGACAGACATATGCATATACATCATATACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTAGATAGATAGACAGACATATGCATATACATCATATACACACAC  550

seq1  TGTAGTGAGAGGAATGGTGTGCAATGAGAAAAAAAATGTTTGTAAACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGAGAGGAATGGTGTGCAATGAGAAAAAAAATGTTTGTAAACTTA  600

seq1  AGTAAATAAGAAAATGAAAATTACAGAGTGACCTAAAGAGATGGGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAAGAAAATGAAAATTACAGAGTGACCTAAAGAGATGGGAGGCT  650

seq1  GTGAGAGATGCACAGGTAAGGTTAGAAATGATGGTTAGAATTAGAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGATGCACAGGTAAGGTTAGAAATGATGGTTAGAATTAGAATAAG  700

seq1  CCTCTGGGATGGAAAGGTCCTGAGTCTTCAGTAATGAGCAGGAA-CCAGT  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTCTGGGATGGAAAGGTCCTGAGTCTTCAGTAATGAGCAGGAACCCAGT  750

seq1  TGTGGATAGGAGAGAATGAAGCAGTTCGA-TTTTAGAGACGTCTTAAAAG  798
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTGGATAGGAGAGAATGAAGCAGTTCGATTTTTAGAGACGTCTTAAAAG  800

seq1  TAAACTCTGATGCTCCGAGATATTGACTAGGGAACACAGAAGGAAGAA-C  847
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAAACTCTGATGCTCCGAGATATTGACTAGGGAACACAGAAGGAAGAACC  850

seq1  CAAGGCTGCCTCATTAGGACTCTCTATTAGGACTTCAAACCTCATTGACC  897
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGCCTCATTAGGACTCTCTATTAGGACTTCAAACCTCATTGACC  900

seq1  GGCATAACCGGTGTCTCTTTCAGGTTCCATATAG-CCTGGCTTCAATGCC  946
      |||||||||||||||||||||| ||||||||||| ||||||||||  |||
seq2  GGCATAACCGGTGTCTCTTTCA-GTTCCATATAGCCCTGGCTTCATGGCC  949

seq1  A-TTCTC-ATATCCATTAA-TCAGCCGCAT-GTCTCCG-TTAGACATTTG  991
      | ||||| ||||||||||| |||||||||| ||||||| ||||||| |||
seq2  ATTTCTCAATATCCATTAATTCAGCCGCATGGTCTCCGTTTAGACA-TTG  998

seq1  AATATTATAG-CTAT-CCTTTTTGGAAAATGTACTGCTCACAGG-TCTTT  1038
       ||||||||| |||| ||||||  | |||||||||||||||||| |||||
seq2  GATATTATAGCCTATCCCTTTTATGGAAATGTACTGCTCACAGGTTCTTT  1048

seq1  GGTTCAATGCCAAAATCCTCATC-TCA--TATTTTTCT-CTCTAATGG-A  1083
      |  |||||||  ||||||||||| |||   |||||||| ||||||||| |
seq2  G--TCAATGC--AAATCCTCATCTTCAATAATTTTTCTCCTCTAATGGAA  1094

seq1  ACAATGGCCCATT  1096
      ||| |||||||||
seq2  ACATTGGCCCATT  1107

seq1: chr10_90067112_90067358
seq2: B6Ng01-301F19.g_74_320 (reverse)

seq1  TCTTCCACTTCATCCCCATCCTCTTCCTCCTCCCCCTTGCAAATTTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACTTCATCCCCATCCTCTTCCTCCTCCCCCTTGCAAATTTCTTA  50

seq1  TGTGGTGTCAGAAGGTAGTTCTTGTGTTAGTAACATCATACATATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTCAGAAGGTAGTTCTTGTGTTAGTAACATCATACATATTTTAT  100

seq1  CTTCACCAGCAGAAACATATGATATCTTTTTAATTCTCAGATAACACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCAGCAGAAACATATGATATCTTTTTAATTCTCAGATAACACTGG  150

seq1  GTATTTGCAATACTTTCCTTTTAAAGAGGAAAGGAAAGGCCTTACGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCAATACTTTCCTTTTAAAGAGGAAAGGAAAGGCCTTACGGCTG  200

seq1  TGTGTGAGGATCAGTGGCAACATTCTTCTTAACCTACAAAGGGTCCT  247
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGGATCAGTGGCAACATTCTTCTTAACCTACAAAGGGTCCT  247

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Alignment Information