BAC Information

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BAC

Clone NameB6Ng01-301I15
Chromosome10 (Build37)
Map Location 79,437,943 - 79,585,140
singlet/doubletdoublet
Overlap geneGrin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11
Upstream geneOlfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18
Downstream geneDos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301I15.bB6Ng01-301I15.g
ACCGA095826GA095827
length1,0741,165
definitionB6Ng01-301I15.b B6Ng01-301I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,584,045 - 79,585,140)(79,437,943 - 79,439,093)
sequence
gaattcttaaaaatgtcactacactcctcccccctagagtaatgcaacga
aggctggggggctgaactgcatagacagctctgacatcagcagccttcct
ggaagagaattagaacagagccaccctgaaggacactctccagcctgcca
cactgcctacaggctctgcagtggtctaggttcccagatttgagagccgt
cgcccatgctggggagggccttggggattcagccatctctgctcctctaa
taataaccccaataaacctcactggttcaccacactagacctcggtggta
tccatactctggtcagccgtgggctccctacctggggtgaacaggcagtg
cgtagcatctccccagaagttacacagcagatgttgtggtggttaatagt
gatcaactctatagacactggccaagtctgagggagtctccagattagac
tgagcaaggacaaagtcctaccccaaaaaaaggattgaggaggagtctgc
ctcctgcctgcagatatgctgtgacatgttcgtcattaggtacctccccc
acagggaggaactctgcctgcaatcgcttccttcctcagtggcctcagtc
aggtgctaggtgacagcaagaagacaagtggatgagacagtagcacagca
tcctcatgactggacatggtgctatgtatctgcaacccaaaacccaggag
gctaaagcagggggattatgagtttgaggctaacctgggctgatgatgac
cctggttcaattcccagcactcatacaatggctcacaactacccagaact
ctagtttcagagatctgatgccctcttctggttacccaggtacatttgga
gtacaatatacaggcaaaacactcataaagttttcataaaaacaaacaaa
caaaaccaccttactgaagcctcagcatccaactctcacccacagaaagt
acttgagggcatcagagcctaagcgcccggcaggttcagaccagagaccc
accactgctcaggccttttgcatctcctgtgtcagatttcttttaagtta
ctaagaaagcaggtgagggctgga
gaattcaccacgactggcctaagcaatcggtcttcagcctggaaaccacc
agctcccactgcaggggtggcaggctgaagcacatccggatttatttccc
ccttttatgttttctggagttcatggtatttacacagcaacttccctcct
agggatctagctgctcatgttctgttgaccgtcccctccccaccttgtgt
cctttgtgtcccttgcaactgggtgctgcctaatgctctagataccataa
gtggttgatggctgggggcaggagggggccagggggatgagagcagaaga
aactggtatctctggggttctcaagtagaatatttgcgggttactgaatc
tgagctcagtgcaaggtccctgcaggtggtcacacgtaggccctggtggg
gatgtgtgctgcaggctgagcatgcctcccctgcagctgcaccacccttc
ccaaggcttccgctttggcaccgtgtgggagagcagcgcggaggcctaca
tcaaggcgagcttccccgagatgcacgcacacatgcgtcgccacagcgca
cctaccactccacacggagtggccatgctcacgtgagtctgtgggtaccg
tgcagcttcggagggccacctgcttctcagaccctattgaccttgccttg
tcctgccccacaggagcgacccgcccaagctcaacgccttcatcatggat
aaatcactactggattatgaggtgtccatagatgcggactgcaagctgct
caccgtgggcaaaccctttgcgatcgagggtgagtgcgtgggtggggctc
tgggggatcgcagctgtaggtgcccgcagctttagtggaggccctctcaa
tctccgcagggctacggcatagggctgccccaaaattcgccgcttcacct
ccaacctgtcagagttcatcagtaggtacaagtcctcaggcttcattgat
ctgctccatgacaagtggttacaagatggtgccttgctggaagccggggg
ttcgcgtgacggagtgggcaagcgccaaaaagacactgggtgggggagtc
ctaggctattgctgcatgcatactgctcgctctaaacaaccccagctcag
cgttccttccgttaaggagaatctccttagcctgtctgcctgggggcgga
agtgggaatgtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79584045_79585140
seq2: B6Ng01-301I15.b_45_1118 (reverse)

seq1  TCCAGCCCCTCACCTGCTTTTCTTAGTTACCTAAAAGAAATCCTGAACAC  50
      ||||| ||||||||||| ||||||||| || |||||||||| ||| ||||
seq2  TCCAG-CCCTCACCTGC-TTTCTTAGTAACTTAAAAGAAAT-CTG-ACAC  46

seq1  AGGAGGATGGCAAAAAGCCCTGAAGCCAGGTGGTTGGGGTCCTTCCTGGG  100
      |||| ||||   ||||| |||| |||   |||||  |||||  |    ||
seq2  AGGA-GATG--CAAAAGGCCTG-AGC--AGTGGT--GGGTCTCT----GG  84

seq1  TCTGAACCTGCCCGGGCGCTTAGGCTCCCTGATGCCCTCAAGTACTTTCC  150
      |||||||||| |||||||||||||||  |||||||||||||||||||| |
seq2  TCTGAACCTG-CCGGGCGCTTAGGCT--CTGATGCCCTCAAGTACTTT-C  130

seq1  TGTGGGTGAGAGTTGGATGCTGGAGGCTTCAGTAAGGTGGTTTTGTTTGT  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGGGTGAGAGTTGGATGCT-GAGGCTTCAGTAAGGTGGTTTTGTTTGT  179

seq1  TTGTTTTTATGAAAACTTTATGAGTGTTTTGCCTGTATATTGTACTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTATGAAAACTTTATGAGTGTTTTGCCTGTATATTGTACTCCAA  229

seq1  ATGTACCTGGGTAACCAGAAGAGGGCATCAGATCTCCTGAAACTAGAGTT  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGTACCTGGGTAACCAGAAGAGGGCATCAGATCT-CTGAAACTAGAGTT  278

seq1  CTGGGTAGTTGTGAGCCATTGTATGAGTGCTGGGAATTGAACCAGGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGTTGTGAGCCATTGTATGAGTGCTGGGAATTGAACCAGGGTCA  328

seq1  TCATCAGCCCAGGTTAGCCTCAAACTCATAATCCCCCTGCTTTAGCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCCCAGGTTAGCCTCAAACTCATAATCCCCCTGCTTTAGCCTCC  378

seq1  TGGGTTTTGGGTTGCAGATACATAGCACCATGTCCAGTCATGAGGATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTGGGTTGCAGATACATAGCACCATGTCCAGTCATGAGGATGCT  428

seq1  GTGCTACTGTCTCATCCACTTGTCTTCTTGCTGTCACCTAGCACCTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACTGTCTCATCCACTTGTCTTCTTGCTGTCACCTAGCACCTGACT  478

seq1  GAGGCCACTGAGGAAGGAAGCGATTGCAGGCAGAGTTCCTCCCTGTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACTGAGGAAGGAAGCGATTGCAGGCAGAGTTCCTCCCTGTGGGG  528

seq1  GAGGTACCTAATGACGAACATGTCACAGCATATCTGCAGGCAGGAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACCTAATGACGAACATGTCACAGCATATCTGCAGGCAGGAGGCAG  578

seq1  ACTCCTCCTCAATCCTTTTTTTGGGGTAGGACTTTGTCCTTGCTCAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCTCAATCCTTTTTTTGGGGTAGGACTTTGTCCTTGCTCAGTCT  628

seq1  AATCTGGAGACTCCCTCAGACTTGGCCAGTGTCTATAGAGTTGATCACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGAGACTCCCTCAGACTTGGCCAGTGTCTATAGAGTTGATCACTA  678

seq1  TTAACCACCACAACATCTGCTGTGTAACTTCTGGGGAGATGCTACGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACCACAACATCTGCTGTGTAACTTCTGGGGAGATGCTACGCACT  728

seq1  GCCTGTTCACCCCAGGTAGGGAGCCCACGGCTGACCAGAGTATGGATACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTCACCCCAGGTAGGGAGCCCACGGCTGACCAGAGTATGGATACC  778

seq1  ACCGAGGTCTAGTGTGGTGAACCAGTGAGGTTTATTGGGGTTATTATTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGGTCTAGTGTGGTGAACCAGTGAGGTTTATTGGGGTTATTATTAG  828

seq1  AGGAGCAGAGATGGCTGAATCCCCAAGGCCCTCCCCAGCATGGGCGACGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGAGATGGCTGAATCCCCAAGGCCCTCCCCAGCATGGGCGACGG  878

seq1  CTCTCAAATCTGGGAACCTAGACCACTGCAGAGCCTGTAGGCAGTGTGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAATCTGGGAACCTAGACCACTGCAGAGCCTGTAGGCAGTGTGGC  928

seq1  AGGCTGGAGAGTGTCCTTCAGGGTGGCTCTGTTCTAATTCTCTTCCAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGAGAGTGTCCTTCAGGGTGGCTCTGTTCTAATTCTCTTCCAGGA  978

seq1  AGGCTGCTGATGTCAGAGCTGTCTATGCAGTTCAGCCCCCCAGCCTTCGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTGATGTCAGAGCTGTCTATGCAGTTCAGCCCCCCAGCCTTCGT  1028

seq1  TGCATTACTCTAGGGGGGAGGAGTGTAGTGACATTTTTAAGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTACTCTAGGGGGGAGGAGTGTAGTGACATTTTTAAGAATTC  1074

seq1: chr10_79437943_79439093
seq2: B6Ng01-301I15.g_68_1232

seq1  GAATTCACCACGACTGGCCTAAGCAATCGGTCTTCAGCCTGGAAACCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACGACTGGCCTAAGCAATCGGTCTTCAGCCTGGAAACCACC  50

seq1  AGCTCCCACTGCAGGGGTGGCAGGCTGAAGCACATCCGGATTTATTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCACTGCAGGGGTGGCAGGCTGAAGCACATCCGGATTTATTTCCC  100

seq1  CCTTTTATGTTTTCTGGAGTTCATGGTATTTACACAGCAACTTCCCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATGTTTTCTGGAGTTCATGGTATTTACACAGCAACTTCCCTCCT  150

seq1  AGGGATCTAGCTGCTCATGTTCTGTTGACCGTCCCCTCCCCACCTTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTAGCTGCTCATGTTCTGTTGACCGTCCCCTCCCCACCTTGTGT  200

seq1  CCTTTGTGTCCCTTGCAACTGGGTGCTGCCTAATGCTCTAGATACCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGTCCCTTGCAACTGGGTGCTGCCTAATGCTCTAGATACCATAA  250

seq1  GTGGTTGATGGCTGGGGGCAGGAGGGGGCCAGGGGGATGAGAGCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGATGGCTGGGGGCAGGAGGGGGCCAGGGGGATGAGAGCAGAAGA  300

seq1  AACTGGTATCTCTGGGGTTCTCAAGTAGAATATTTGCGGGTTACTGAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTATCTCTGGGGTTCTCAAGTAGAATATTTGCGGGTTACTGAATC  350

seq1  TGAGCTCAGTGCAAGGTCCCTGCAGGTGGTCACACGTAGGCCCTGGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCAGTGCAAGGTCCCTGCAGGTGGTCACACGTAGGCCCTGGTGGG  400

seq1  GATGTGTGCTGCAGGCTGAGCATGCCTCCCCTGCAGCTGCACCACCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGCTGCAGGCTGAGCATGCCTCCCCTGCAGCTGCACCACCCTTC  450

seq1  CCAAGGCTTCCGCTTTGGCACCGTGTGGGAGAGCAGCGCGGAGGCCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTTCCGCTTTGGCACCGTGTGGGAGAGCAGCGCGGAGGCCTACA  500

seq1  TCAAGGCGAGCTTCCCCGAGATGCACGCACACATGCGTCGCCACAGCGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCGAGCTTCCCCGAGATGCACGCACACATGCGTCGCCACAGCGCA  550

seq1  CCTACCACTCCACACGGAGTGGCCATGCTCACGTGAGTCTGTGGGTACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCACTCCACACGGAGTGGCCATGCTCACGTGAGTCTGTGGGTACCG  600

seq1  TGCAGCTTCGGAGGGCCACCTGCTTCTCAGACCCTATTGACCTTGCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTTCGGAGGGCCACCTGCTTCTCAGACCCTATTGACCTTGCCTTG  650

seq1  TCCTGCCCCACAGGAGCGACCCGCCCAAGCTCAACGCCTTCATCATGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCCACAGGAGCGACCCGCCCAAGCTCAACGCCTTCATCATGGAT  700

seq1  AAATCACTACTGGATTATGAGGTGTCCATAGATGCGGACTGCAAGCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTACTGGATTATGAGGTGTCCATAGATGCGGACTGCAAGCTGCT  750

seq1  CACCGTGGGCAAACCCTTTGCGATCGAGGGTGAGTGCGT-GGTGGGGCTC  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACCGTGGGCAAACCCTTTGCGATCGAGGGTGAGTGCGTGGGTGGGGCTC  800

seq1  T-GGGGATCGCAGCTGTAGGTGCCCGCAGCTTTAGTGGA-GCCCTCTCAA  847
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGGGGATCGCAGCTGTAGGTGCCCGCAGCTTTAGTGGAGGCCCTCTCAA  850

seq1  TCTCCGCA-GGCTACGGCATAGGGCTGCCCCAAAATTCGCCGC-TCACCT  895
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCCGCAGGGCTACGGCATAGGGCTGCCCCAAAATTCGCCGCTTCACCT  900

seq1  CCAACCTGTCAGAGTTCATCAGTAGGTACAAGTCCTCAGGCTTCATTGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGTCAGAGTTCATCAGTAGGTACAAGTCCTCAGGCTTCATTGAT  950

seq1  CTGCTCCATGACAAGTGG-TACAAGATGGTGCCTTGCGGGAAG-CGGGTG  993
      |||||||||||||||||| |||||||||||||||||| ||||| |||| |
seq2  CTGCTCCATGACAAGTGGTTACAAGATGGTGCCTTGCTGGAAGCCGGGGG  1000

seq1  TTCGCCGTGACGGAGGTGGGCAGGCGCC--AGAGACACAGGGT-GGGGAG  1040
      |||| ||||||||| ||||||| |||||  | |||||| |||| ||||||
seq2  TTCG-CGTGACGGA-GTGGGCAAGCGCCAAAAAGACACTGGGTGGGGGAG  1048

seq1  -CCCAGGCTATGCTTGCATGCATTCCTGCTCGCTCTAAACAACCCCAGCT  1089
       || |||||||   |||||||| | |||||||||||||||||||||||||
seq2  TCCTAGGCTATTGCTGCATGCA-TACTGCTCGCTCTAAACAACCCCAGCT  1097

seq1  CCAGCGTCCCTTCCTTTAA-GAG-ATCTCCCTAGCTGCCCTGCC-CGGGG  1136
       |||||| |||||| |||| ||| |||||| ||||    |||||  ||||
seq2  -CAGCGTTCCTTCCGTTAAGGAGAATCTCCTTAGCCTGTCTGCCTGGGGG  1146

seq1  CGGAA-TGGGA---TGGGG  1151
      ||||| |||||   |||||
seq2  CGGAAGTGGGAATGTGGGG  1165