BAC Information

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BAC

Clone NameB6Ng01-302A09
Chromosome10 (Build37)
Map Location 38,729,867 - 38,783,779
singlet/doubletdoublet
Overlap geneLama4
Upstream geneLOC100040915
Downstream gene1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302A09.bB6Ng01-302A09.g
ACCGA096187GA096188
length1,156329
definitionB6Ng01-302A09.b B6Ng01-302A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,729,867 - 38,731,021)(38,783,451 - 38,783,779)
sequence
gaattctcattgatcagactgtctaagccatattctaatttattttctgc
tgcataattatatttcagagccatacctaatggtaggccaaatgcttaag
gagaatgcagtcagggtagtttgttacccacataggattcctcctgttgg
actactgcagtgtactgagggcctacctcacacatgttaattgtaataca
gtgctaaattatccagtgtgttagagaagaagggtgagtctgggacaggt
aacttgatgtggatagtgggacacagataggaccgtgaggggagaactaa
agagaactttctggaaattttgaaacgtgctgcagatctccaaaaagaag
agcctagtttatgccattcttcctatttgttacccttatcagaaatggga
aattataaaaaccaacctgcctgctatttcacatgtgttgttaaccaaga
taggaaaccattagtagaaggtcctttatcttccttctgatgtatgtgtg
ccacagcctgacatatttgctcttctgtgcccataaatcctcctttccac
tctcatagttaagtactaagggaatattatttattttcatttcattttca
ttaccaagtcagtaagcctaagcatccagaacacctagagtatggtaact
ctaactatctttctgaatcaagatggttgactgatgagtcccctctgcat
acagactccaaatagagtcccagcctgccagtgcacacatagacctgcag
ggtgcatgcctctgccttcatctacacctctagctctgactagcacttac
atgagtcctttatgttgccacataccatgtattctggtaggctgacgtct
gtttgtttgaagtaagctagggtgcttacatttgctctctctgacctttc
ttcattcttctcaatactcctgtctcctgtcctacagcactgccagcgga
acacaacaggagagcactgtgaaaaatgtctggatgggctatattggaga
ctccatcagaggcacaccccggttctgccagccggtgcccctgtcctttg
ccccacctgggcagtaagtcctagaaagacaagtttcaccaatgactact
cttccacattaattaatttttagcctctattgaccatagttcctggggtt
gtccat
tattaatttttcacctaggtatttgatgctactgaaaactgttattttta
aatgctaatttccagcttttttttaaaaaaaaaactaagctaggtattta
tgtatagaattagtaatgcgtataacctgtctttgtttgcagtctcattg
gaaaagccttttaatattttatcatgaatgtgtttgctgaatattacttg
attattctttattagattatggaaattttctcctgttctctgtttactaa
gagtttaaaaaatattggatttgtgttgttttattaatgaagtgaagtgg
gtaggaatgttgtgatctgggaggagttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_38729867_38731021
seq2: B6Ng01-302A09.b_49_1204

seq1  GAATTCTCATTGATCAGACTGTCTAAGCCATATTCTAATTTATTTTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTGATCAGACTGTCTAAGCCATATTCTAATTTATTTTCTGC  50

seq1  TGCATAATTATATTTCAGAGCCATACCTAATGGTAGGCCAAATGCTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATTATATTTCAGAGCCATACCTAATGGTAGGCCAAATGCTTAAG  100

seq1  GAGAATGCAGTCAGGGTAGTTTGTTACCCACATAGGATTCCTCCTGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGCAGTCAGGGTAGTTTGTTACCCACATAGGATTCCTCCTGTTGG  150

seq1  ACTACTGCAGTGTACTGAGGGCCTACCTCACACATGTTAATTGTAATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGCAGTGTACTGAGGGCCTACCTCACACATGTTAATTGTAATACA  200

seq1  GTGCTAAATTATCCAGTGTGTTAGAGAAGAAGGGTGAGTCTGGGACAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAATTATCCAGTGTGTTAGAGAAGAAGGGTGAGTCTGGGACAGGT  250

seq1  AACTTGATGTGGATAGTGGGACACAGATAGGACCGTGAGGGGAGAACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATGTGGATAGTGGGACACAGATAGGACCGTGAGGGGAGAACTAA  300

seq1  AGAGAACTTTCTGGAAATTTTGAAACGTGCTGCAGATCTCCAAAAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTTTCTGGAAATTTTGAAACGTGCTGCAGATCTCCAAAAAGAAG  350

seq1  AGCCTAGTTTATGCCATTCTTCCTATTTGTTACCCTTATCAGAAATGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGTTTATGCCATTCTTCCTATTTGTTACCCTTATCAGAAATGGGA  400

seq1  AATTATAAAAACCAACCTGCCTGCTATTTCACATGTGTTGTTAACCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAAAACCAACCTGCCTGCTATTTCACATGTGTTGTTAACCAAGA  450

seq1  TAGGAAACCATTAGTAGAAGGTCCTTTATCTTCCTTCTGATGTATGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAACCATTAGTAGAAGGTCCTTTATCTTCCTTCTGATGTATGTGTG  500

seq1  CCACAGCCTGACATATTTGCTCTTCTGTGCCCATAAATCCTCCTTTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCTGACATATTTGCTCTTCTGTGCCCATAAATCCTCCTTTCCAC  550

seq1  TCTCATAGTTAAGTACTAAGGGAATATTATTTATTTTCATTTCATTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGTTAAGTACTAAGGGAATATTATTTATTTTCATTTCATTTTCA  600

seq1  TTACCAAGTCAGTAAGCCTAAGCATCCAGAACACCTAGAGTATGGTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAGTCAGTAAGCCTAAGCATCCAGAACACCTAGAGTATGGTAACT  650

seq1  CTAACTATCTTTCTGAATCAAGATGGTTGACTGATGAGTCCCCTCTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTATCTTTCTGAATCAAGATGGTTGACTGATGAGTCCCCTCTGCAT  700

seq1  ACAGACTCCAAATAGAGTCCCAGCCTGCCAGTGCACACATAGACCTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTCCAAATAGAGTCCCAGCCTGCCAGTGCACACATAGACCTGCAG  750

seq1  GGTGCATGCCTCTGCCTTCATCTACACCTCTAGCTCTGACTAGCACTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATGCCTCTGCCTTCATCTACACCTCTAGCTCTGACTAGCACTTAC  800

seq1  ATGAGTCCTTTATGTTGCCACATACCATGTATTCTGGTAGGCTGACGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCCTTTATGTTGCCACATACCATGTATTCTGGTAGGCTGACGTCT  850

seq1  GTTTGTTTGAAGTAAGCTAGGGTGCTTACATTTGCTCTCTCTGACCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGAAGTAAGCTAGGGTGCTTACATTTGCTCTCTCTGACCTTTC  900

seq1  TTCATTCTTCTCAATACTCCTGTCTCCTGTCCTACAGCACTGCCAGCGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTTCTCAATACTCCTGTCTCCTGTCCTACAGCACTGCCAGCGGA  950

seq1  ACACAACAGGAGAGCACTGTGAAAAATGTCTGGAT-GGCTATATTGGAGA  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACACAACAGGAGAGCACTGTGAAAAATGTCTGGATGGGCTATATTGGAGA  1000

seq1  CTCCATCAGAGGCACACCCCGGTTCTGCCAGCC-GTGCCCCTGTCCCTTG  1048
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  CTCCATCAGAGGCACACCCCGGTTCTGCCAGCCGGTGCCCCTGTCCTTTG  1050

seq1  CCCCACCTGGCCAAGTAAGTCCTAAAGAAAGAC-AGTTTCACCAAATGAC  1097
      |||||||||| | ||||||||||  |||||||| ||||||||| ||||||
seq2  CCCCACCTGGGC-AGTAAGTCCT--AGAAAGACAAGTTTCACC-AATGAC  1096

seq1  TACTCT--CACATTTATTTATTTTTTTTTAG-CTCTAT---GCATAGTTC  1141
      ||||||  |||||| ||| |    ||||||| ||||||    ||||||||
seq2  TACTCTTCCACATTAATTAA----TTTTTAGCCTCTATTGACCATAGTTC  1142

seq1  TGGGGTTTGTCCAT  1155
        ||| ||||||||
seq2  CTGGGGTTGTCCAT  1156

seq1: chr10_38783451_38783779
seq2: B6Ng01-302A09.g_70_398 (reverse)

seq1  CAACTCCTCCCAGATCACAACATTCCTACCCACTTCACTTCATTAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTCCCAGATCACAACATTCCTACCCACTTCACTTCATTAATAAA  50

seq1  ACAACACAAATCCAATATTTTTTAAACTCTTAGTAAACAGAGAACAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACAAATCCAATATTTTTTAAACTCTTAGTAAACAGAGAACAGGAG  100

seq1  AAAATTTCCATAATCTAATAAAGAATAATCAAGTAATATTCAGCAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCCATAATCTAATAAAGAATAATCAAGTAATATTCAGCAAACAC  150

seq1  ATTCATGATAAAATATTAAAAGGCTTTTCCAATGAGACTGCAAACAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGATAAAATATTAAAAGGCTTTTCCAATGAGACTGCAAACAAAGA  200

seq1  CAGGTTATACGCATTACTAATTCTATACATAAATACCTAGCTTAGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTATACGCATTACTAATTCTATACATAAATACCTAGCTTAGTTTTT  250

seq1  TTTTTAAAAAAAAGCTGGAAATTAGCATTTAAAAATAACAGTTTTCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAAAAGCTGGAAATTAGCATTTAAAAATAACAGTTTTCAGTA  300

seq1  GCATCAAATACCTAGGTGAAAAATTAATA  329
      |||||||||||||||||||||||||||||
seq2  GCATCAAATACCTAGGTGAAAAATTAATA  329