BAC Information

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BAC

Clone NameB6Ng01-302G20
Chromosome10 (Build37)
Map Location 77,636,374 - 77,777,839
singlet/doubletdoublet
Overlap genePwp2, Tmem1, Agpat3
Upstream genePofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e
Downstream geneLOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302G20.bB6Ng01-302G20.g
ACCGA096477GA096478
length1,0831,173
definitionB6Ng01-302G20.b B6Ng01-302G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,776,767 - 77,777,839)(77,636,374 - 77,637,516)
sequence
gaattctttgagtgtcctttcctgtttgctgagtacttgtgggaggttct
ttcggtttgctggagcagtacagatagccaggcatcccaggcagaaccct
tttggccctgctggccggtaccatgtaatttattggtctgtccaacatgg
agcgatactaggtagcttgcactgaggcattctgggatgtggggccccta
tcctctttacagtcttggaggaaatgtatataaaatgtaaaaaaaaaaaa
aatggcttatgtaaaaatctcatttgtcttgcctttggaactttttattt
tgagacctaagacatctcaccagaaacaacaagaaccaaccagcctcctg
gagcctgggccctatttattgggtctgtccaaagcacctttgaaagaccc
agcatttgaggagatgggtccctttagcaatcccactgtcataaatatat
ttttaaacatagtccctccctggccaaggtgggcctttctggttttggct
tcatgctactccaagaagccaggatcagcaggtgaacatgggttaagcta
ggagtgctggatggctggggacccatctctgctgggccctttgccctgct
cgtaaggggtggcagcgtgggtactgaggtggttttgagggtgagtgcag
gcaagtaagaggcagaacaggcacagtaccttttccatgcccgtccttat
gtggctctaccagggaggcatgatgaagagcatgagttatttgtagttat
tttagtttcttactatgctttcttttctttcttcctttctctctttcttt
cctttttttatagcccacagcacccagtattcccaggcggtctcccatcc
aagtactaaccaggtctgacccttcttagcctccaagatcaggcaaaatc
aggcgagttgagggtgggtatagtcctcagactttaactaggcttttctt
atccagcctttttctgaaggttgaaaacaatgatttctcagccaggtatt
ctgatacttacccatcatcccagcatgccaggagtctaagtcatgagtat
gaggattaagaatacggaaggaaggggaaggga
gaattccaggtgcctagattcttcaaaggaggcagctaagaactccagta
ctttcactacgtacagctcaggcagggacgtgctgactacctcaactgca
ggaagaagaaaagccatatcagtttgcaaagaagttgtcagggagactgg
agccacctggagctcctctgcagcagcgaagtgtggctggtggccccggc
ttactttcattctgtggcacagcctccagggcctcctgggccagtttttt
ctcattgaggcggaaggccatgaggatggcccgggtaaactccctctgtc
ggagcgcctcccggatccgtccaggggtcacactggtgtccagctcaaat
gggtcgaagagcatctgggcatccagggagaagatgaggaggccctctgt
gctggtggccgcccagcagcgccctgtggagcaagcagcaaaggggcttc
ctcaaaccttgaaagcccactcatcccctgctttgtagaaggtataaaca
aaaccatgggcagatggtctttctagggctgcagctgcccagatgcccaa
ttcctctggctgttccaggaaatcagtgggcttcccagaacagggcagac
cttcagccttgaaggccatatagttcatgtccagctgtgcccaccatcca
caccaagggcatagccacacactgggcatagtgagaagtggctcacaaaa
aaaaaaaaaaaaaaaaaaaaaagaagaagaagctgcagaattgtgtggca
ggacagatgggaccactctgggccccaggctgtggtctgtggatgtctgg
tctacctttccacaagtgggaagtggggacatagggatgatcgtctcccg
aaacgtgcctgacacagggataacacacagcaataccctcagtctgtcct
tcttcaattagtgctgcaagggcacagcttcaggaccctgccctggccct
gccctgctctaacggaacacatgtaccttagcaggcttggaggcctaagc
aggatcccttgaacacggctggagggttcagaaggccagggtgggtaggg
cacctattccacctagcctggaggtgctgagagtctgccctcttaggaat
gtacttgacttgtccatcccccaagagcaagttcaggctcccattgtagt
ggttagggatggaagttttcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77776767_77777839
seq2: B6Ng01-302G20.b_48_1130 (reverse)

seq1  TCCCT--CCCTTCCTTCCGTAT--CTAATCCTCATACTCATGAC-TAGAC  45
      |||||  |||||||||||||||   ||||||||||||||||||| |||||
seq2  TCCCTTCCCCTTCCTTCCGTATTCTTAATCCTCATACTCATGACTTAGAC  50

seq1  TCCT-GCATGCTGGGATGATGGGTAAGTATCAAGATACCTGGCTGAGAAA  94
      |||| |||||||||||||||||||||||||||  ||||||||||||||||
seq2  TCCTGGCATGCTGGGATGATGGGTAAGTATCAGAATACCTGGCTGAGAAA  100

seq1  TCATTGTTTTCAACCTTTCAGAAAAAGGCTGGATA--GAAAGCCTAG-TA  141
      ||||||||||||||| |||||||||||||||||||   ||||||||| ||
seq2  TCATTGTTTTCAACC-TTCAGAAAAAGGCTGGATAAGAAAAGCCTAGTTA  149

seq1  AAGTCTGAGG-CTATA-CCACCCTCAACTCGCCTGATTTTGCCTGATCTT  189
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  AAGTCTGAGGACTATACCCACCCTCAACTCGCCTGATTTTGCCTGATCTT  199

seq1  GGAGGCTAAGAAGGGTCAGACCTGGTTAGTACTTGGATGGGAGACCGCCT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTAAGAAGGGTCAGACCTGGTTAGTACTTGGATGGGAGACCGCCT  249

seq1  GGGAATACTGGGTGCTGTGGGCTATAAAAAAAGGAAAGAAAGAGAGAAAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATACTGGGTGCTGTGGGCTATAAAAAAAGGAAAGAAAGAGAGAAAG  299

seq1  GAAGAAAGAAAAGAAAGCATAGTAAGAAACTAAAATAACTACAAATAACT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAAAAGAAAGCATAGTAAGAAACTAAAATAACTACAAATAACT  349

seq1  CATGCTCTTCATCATGCCTCCCTGGTAGAGCCACATAAGGACGGGCATGG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTTCATCATGCCTCCCTGGTAGAGCCACATAAGGACGGGCATGG  399

seq1  AAAAGGTACTGTGCCTGTTCTGCCTCTTACTTGCCTGCACTCACCCTCAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTACTGTGCCTGTTCTGCCTCTTACTTGCCTGCACTCACCCTCAA  449

seq1  AACCACCTCAGTACCCACGCTGCCACCCCTTACGAGCAGGGCAAAGGGCC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTCAGTACCCACGCTGCCACCCCTTACGAGCAGGGCAAAGGGCC  499

seq1  CAGCAGAGATGGGTCCCCAGCCATCCAGCACTCCTAGCTTAACCCATGTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGATGGGTCCCCAGCCATCCAGCACTCCTAGCTTAACCCATGTT  549

seq1  CACCTGCTGATCCTGGCTTCTTGGAGTAGCATGAAGCCAAAACCAGAAAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTGATCCTGGCTTCTTGGAGTAGCATGAAGCCAAAACCAGAAAG  599

seq1  GCCCACCTTGGCCAGGGAGGGACTATGTTTAAAAATATATTTATGACAGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCTTGGCCAGGGAGGGACTATGTTTAAAAATATATTTATGACAGT  649

seq1  GGGATTGCTAAAGGGACCCATCTCCTCAAATGCTGGGTCTTTCAAAGGTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGCTAAAGGGACCCATCTCCTCAAATGCTGGGTCTTTCAAAGGTG  699

seq1  CTTTGGACAGACCCAATAAATAGGGCCCAGGCTCCAGGAGGCTGGTTGGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGACAGACCCAATAAATAGGGCCCAGGCTCCAGGAGGCTGGTTGGT  749

seq1  TCTTGTTGTTTCTGGTGAGATGTCTTAGGTCTCAAAATAAAAAGTTCCAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGTTTCTGGTGAGATGTCTTAGGTCTCAAAATAAAAAGTTCCAA  799

seq1  AGGCAAGACAAATGAGATTTTTACATAAGCCATTTTTTTTTTTTTTACAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGACAAATGAGATTTTTACATAAGCCATTTTTTTTTTTTTTACAT  849

seq1  TTTATATACATTTCCTCCAAGACTGTAAAGAGGATAGGGGCCCCACATCC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATACATTTCCTCCAAGACTGTAAAGAGGATAGGGGCCCCACATCC  899

seq1  CAGAATGCCTCAGTGCAAGCTACCTAGTATCGCTCCATGTTGGACAGACC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGCCTCAGTGCAAGCTACCTAGTATCGCTCCATGTTGGACAGACC  949

seq1  AATAAATTACATGGTACCGGCCAGCAGGGCCAAAAGGGTTCTGCCTGGGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTACATGGTACCGGCCAGCAGGGCCAAAAGGGTTCTGCCTGGGA  999

seq1  TGCCTGGCTATCTGTACTGCTCCAGCAAACCGAAAGAACCTCCCACAAGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCTATCTGTACTGCTCCAGCAAACCGAAAGAACCTCCCACAAGT  1049

seq1  ACTCAGCAAACAGGAAAGGACACTCAAAGAATTC  1073
      ||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAAACAGGAAAGGACACTCAAAGAATTC  1083

seq1: chr10_77636374_77637516
seq2: B6Ng01-302G20.g_68_1240

seq1  GAATTCCAGGTGCCTAGATTCTTCAAAGGAGGCAGCTAAGAACTCCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCCTAGATTCTTCAAAGGAGGCAGCTAAGAACTCCAGTA  50

seq1  CTTTCACTACGTACAGCTCAGGCAGGGACGTGCTGACTACCTCAACTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTACGTACAGCTCAGGCAGGGACGTGCTGACTACCTCAACTGCA  100

seq1  GGAAGAAGAAAAGCCATATCAGTTTGCAAAGAAGTTGTCAGGGAGACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGAAAAGCCATATCAGTTTGCAAAGAAGTTGTCAGGGAGACTGG  150

seq1  AGCCACCTGGAGCTCCTCTGCAGCAGCGAAGTGTGGCTGGTGGCCCCGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTGGAGCTCCTCTGCAGCAGCGAAGTGTGGCTGGTGGCCCCGGC  200

seq1  TTACTTTCATTCTGTGGCACAGCCTCCAGGGCCTCCTGGGCCAGTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCATTCTGTGGCACAGCCTCCAGGGCCTCCTGGGCCAGTTTTTT  250

seq1  CTCATTGAGGCGGAAGGCCATGAGGATGGCCCGGGTAAACTCCCTCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGAGGCGGAAGGCCATGAGGATGGCCCGGGTAAACTCCCTCTGTC  300

seq1  GGAGCGCCTCCCGGATCCGTCCAGGGGTCACACTGGTGTCCAGCTCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGCCTCCCGGATCCGTCCAGGGGTCACACTGGTGTCCAGCTCAAAT  350

seq1  GGGTCGAAGAGCATCTGGGCATCCAGGGAGAAGATGAGGAGGCCCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGAAGAGCATCTGGGCATCCAGGGAGAAGATGAGGAGGCCCTCTGT  400

seq1  GCTGGTGGCCGCCCAGCAGCGCCCTGTGGAGCAAGCAGCAAAGGGGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGCCGCCCAGCAGCGCCCTGTGGAGCAAGCAGCAAAGGGGCTTC  450

seq1  CTCAAACCTTGAAAGCCCACTCATCCCCTGCTTTGTAGAAGGTATAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCTTGAAAGCCCACTCATCCCCTGCTTTGTAGAAGGTATAAACA  500

seq1  AAACCATGGGCAGATGGTCTTTCTAGGGCTGCAGCTGCCCAGATGCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATGGGCAGATGGTCTTTCTAGGGCTGCAGCTGCCCAGATGCCCAA  550

seq1  TTCCTCTGGCTGTTCCAGGAAATCAGTGGGCTTCCCAGAACAGGGCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGGCTGTTCCAGGAAATCAGTGGGCTTCCCAGAACAGGGCAGAC  600

seq1  CTTCAGCCTTGAAGGCCATATAGTTCATGTCCAGCTGTGCCCACCATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCTTGAAGGCCATATAGTTCATGTCCAGCTGTGCCCACCATCCA  650

seq1  CACCAAGGGCATAGCCACACACTGGGCATAGTGAGAAGTGGCTCACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGGGCATAGCCACACACTGGGCATAGTGAGAAGTGGCTCACAAAA  700

seq1  AAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGCTGCAGAATTGTGTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGCTGCAGAATTGTGTGGCA  750

seq1  GGACAGATGGGACCACTCTGGGCCCCAGGCTGTGGTCTGTGGATGTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATGGGACCACTCTGGGCCCCAGGCTGTGGTCTGTGGATGTCTGG  800

seq1  TCTACC-TTCCAC-AGTGGGAAGT-GGGACATAGGGATGATCGTCTCC--  845
      |||||| |||||| |||||||||| |||||||||||||||||||||||  
seq2  TCTACCTTTCCACAAGTGGGAAGTGGGGACATAGGGATGATCGTCTCCCG  850

seq1  GAACGTGCCTGACACA-GGATAACAACACAGC-ATA-CCTCAGTCTGTCC  892
       ||||||||||||||| ||||||| ||||||| ||| |||||||||||||
seq2  AAACGTGCCTGACACAGGGATAAC-ACACAGCAATACCCTCAGTCTGTCC  899

seq1  T--CTCCATTAGTGCTGC-AGGGCACAGC-TCAGGACCCTGCCCT-GCCC  937
      |   || ||||||||||| |||||||||| ||||||||||||||| ||||
seq2  TTCTTCAATTAGTGCTGCAAGGGCACAGCTTCAGGACCCTGCCCTGGCCC  949

seq1  TGCCCTGCCCTAACGGAACACATGTACC-TAGCAGGCTT-GAGGCCTAAG  985
      |||||||| ||||||||||||||||||| |||||||||| ||||||||||
seq2  TGCCCTGCTCTAACGGAACACATGTACCTTAGCAGGCTTGGAGGCCTAAG  999

seq1  CA-GATCCC-TGAACAC-GCT-GAGGG-TCAGA--GGCAGGGTGGGTAAG  1028
      || |||||| ||||||| ||| ||||| |||||  | ||||||||||| |
seq2  CAGGATCCCTTGAACACGGCTGGAGGGTTCAGAAGGCCAGGGTGGGTAGG  1049

seq1  GCA-CTAT--CA-CTAGC--TGAGGTGCTGAGAGTCTG-CCTCCTAGGAA  1071
      ||| ||||  || |||||   ||||||||||||||||| |||| ||||||
seq2  GCACCTATTCCACCTAGCCTGGAGGTGCTGAGAGTCTGCCCTCTTAGGAA  1099

seq1  GGGTACCTGGACTGT-CATCCCCCAAGAGCAGGGTCCAGGCTCCCACTGT  1120
        |||| ||   ||| |||||||||||||||  || |||||||||| |||
seq2  -TGTACTTGACTTGTCCATCCCCCAAGAGCA-AGTTCAGGCTCCCATTGT  1147

seq1  AGTGG-TAGGGATGGA--GTTTCACA  1143
      ||||| ||||||||||   |||||||
seq2  AGTGGTTAGGGATGGAAGTTTTCACA  1173