BAC Information

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BAC

Clone NameB6Ng01-302H20
Chromosome10 (Build37)
Map Location 77,636,374 - 77,777,839
singlet/doubletdoublet
Overlap genePwp2, Tmem1, Agpat3
Upstream genePofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e
Downstream geneLOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302H20.bB6Ng01-302H20.g
ACCGA096523GA096524
length1,0951,081
definitionB6Ng01-302H20.b B6Ng01-302H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,776,746 - 77,777,839)(77,636,374 - 77,637,428)
sequence
gaattctttgagtgtcctttcctgtttgctgagtacttgtgggaggttct
ttcggtttgctggagcagtacagatagccaggcatcccaggcagaaccct
tttggccctgctggccggtaccatgtaatttattggtctgtccaacatgg
agcgatactaggtagcttgcactgaggcattctgggatgtggggccccta
tcctctttacagtcttggaggaaatgtatataaaatgtaaaaaaaaaaaa
aatggcttatgtaaaaatctcatttgtcttgcctttggaactttttattt
tgagacctaagacatctcaccagaaacaacaagaaccaaccagcctcctg
gagcctgggccctatttattgggtctgtccaaagcacctttgaaagaccc
agcatttgaggagatgggtccctttagcaatcccactgtcataaatatat
ttttaaacatagtccctccctggccaaggtgggcctttctggttttggct
tcatgctactccaagaagccaggatcagcaggtgaacatgggttaagcta
ggagtgctggatggctggggacccatctctgctgggccctttgccctgct
cgtaaggggtggcagcgtgggtactgaggtggttttgagggtgagtgcag
gcaagtaagaggcagaacaggcacagtaccttttccatgcccgtccttat
gtggctctaccagggaggcatgatgaagagcatgagttatttgtagttat
tttagtttcttactatgctttcttttctttcttcctttctctctttcttt
ccttttttttatagcccacagcacccagtattcccaggcggtctcccatc
caagtactaaccaggtctgacccttcttagcctccaagatcaggcaaaat
caggcgagttgagggtggtatagcctcagacttttactaggctttctatc
cagcctttttttcttgaaaaggttgaaaaccatgatttcttcagccaagg
tattcttggatactacccatcatcccagcatgcagagttctagtcatgag
taatgaaggattaagatacgggaatggaaatgggaagggaggaag
gaattccaggtgcctagattcttcaaaggaggcagctaagaactccagta
ctttcactacgtacagctcaggcagggacgtgctgactacctcaactgca
ggaagaagaaaagccatatcagtttgcaaagaagttgtcagggagactgg
agccacctggagctcctctgcagcagcgaagtgtggctggtggccccggc
ttactttcattctgtggcacagcctccagggcctcctgggccagtttttt
ctcattgaggcggaaggccatgaggatggcccgggtaaactccctctgtc
ggagcgcctcccggatccgtccaggggtcacactggtgtccagctcaaat
gggtcgaagagcatctgggcatccagggagaagatgaggaggccctctgt
gctggtggccgcccagcagcgccctgtggagcaagcagcaaaggggcttc
ctcaaaccttgaaagcccactcatcccctgctttgtagaaggtataaaca
aaaccatgggcagatggtctttctagggctgcagctgcccagatgcccaa
ttcctctggctgttccaggaaatcagtgggcttcccagaacagggcagac
cttcagccttgaaggccatatagttcatgtccagctgtgcccaccatcca
caccaagggcatagccacacactgggcatagtgagaagtggctcacaaaa
aaaaaaaaaaaaaaaaaaaaagaaagaagaagctgcagaattgtgtggca
ggacagatgggaccactctgggccccaggctgtggtctgtggatgtctgg
tctaccttccacaggtgggaagtgggacatagggatgatcgtctccgaac
gtgcctgacacaggattaacaacacagcataccttcagtctgtcctcctc
cattagtgctgcagggcacagcttcaggactcctggctcctgctcttgct
cctgctcctaacgggaactacattgtaccttagcaggctttgaggcctaa
ggcagatccttgaacacgctgaagggttcagaaggccagggttgggtaag
gcacctattccactagctgaggtgcctgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77776746_77777839
seq2: B6Ng01-302H20.b_47_1141 (reverse)

seq1  CTTCCTCCCTTCTTTCCTTCCTCCCTCCCTTCCTTCCGTATC-TAATCC-  48
      ||||||||||||   || |      ||| |||   ||||||| |||||| 
seq2  CTTCCTCCCTTC---CCAT-----TTCCATTC---CCGTATCTTAATCCT  39

seq1  TCA-TACTCATGACTAGACTCCTGCATGCTGGGATGATGGGTAAGTAT-C  96
      ||| ||||||||||||||   ||||||||||||||||||||| ||||| |
seq2  TCATTACTCATGACTAGAACTCTGCATGCTGGGATGATGGGT-AGTATCC  88

seq1  AAG-ATACC-TGGCTG-AGAAATCATTGTTTTCAACCTTT----CAGAAA  139
      ||| ||||| |||||| ||||||||| |||||||||||||     | |||
seq2  AAGAATACCTTGGCTGAAGAAATCATGGTTTTCAACCTTTTCAAGAAAAA  138

seq1  AAGGCTGGATAGAAAGCCTAGT-AAAGTCTGAGGCTATACCACCCTCAAC  188
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGGCTGGATAGAAAGCCTAGTAAAAGTCTGAGGCTATACCACCCTCAAC  188

seq1  TCGCCTGATTTTGCCTGATCTTGGAGGCTAAGAAGGGTCAGACCTGGTTA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTGATTTTGCCTGATCTTGGAGGCTAAGAAGGGTCAGACCTGGTTA  238

seq1  GTACTTGGATGGGAGACCGCCTGGGAATACTGGGTGCTGTGGGCTAT-AA  287
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTACTTGGATGGGAGACCGCCTGGGAATACTGGGTGCTGTGGGCTATAAA  288

seq1  AAAAAGGAAAGAAAGAGAGAAAGGAAGAAAGAAAAGAAAGCATAGTAAGA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAAGAAAGAGAGAAAGGAAGAAAGAAAAGAAAGCATAGTAAGA  338

seq1  AACTAAAATAACTACAAATAACTCATGCTCTTCATCATGCCTCCCTGGTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAATAACTACAAATAACTCATGCTCTTCATCATGCCTCCCTGGTA  388

seq1  GAGCCACATAAGGACGGGCATGGAAAAGGTACTGTGCCTGTTCTGCCTCT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACATAAGGACGGGCATGGAAAAGGTACTGTGCCTGTTCTGCCTCT  438

seq1  TACTTGCCTGCACTCACCCTCAAAACCACCTCAGTACCCACGCTGCCACC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCTGCACTCACCCTCAAAACCACCTCAGTACCCACGCTGCCACC  488

seq1  CCTTACGAGCAGGGCAAAGGGCCCAGCAGAGATGGGTCCCCAGCCATCCA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACGAGCAGGGCAAAGGGCCCAGCAGAGATGGGTCCCCAGCCATCCA  538

seq1  GCACTCCTAGCTTAACCCATGTTCACCTGCTGATCCTGGCTTCTTGGAGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCTAGCTTAACCCATGTTCACCTGCTGATCCTGGCTTCTTGGAGT  588

seq1  AGCATGAAGCCAAAACCAGAAAGGCCCACCTTGGCCAGGGAGGGACTATG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAAGCCAAAACCAGAAAGGCCCACCTTGGCCAGGGAGGGACTATG  638

seq1  TTTAAAAATATATTTATGACAGTGGGATTGCTAAAGGGACCCATCTCCTC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATATATTTATGACAGTGGGATTGCTAAAGGGACCCATCTCCTC  688

seq1  AAATGCTGGGTCTTTCAAAGGTGCTTTGGACAGACCCAATAAATAGGGCC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGGTCTTTCAAAGGTGCTTTGGACAGACCCAATAAATAGGGCC  738

seq1  CAGGCTCCAGGAGGCTGGTTGGTTCTTGTTGTTTCTGGTGAGATGTCTTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCAGGAGGCTGGTTGGTTCTTGTTGTTTCTGGTGAGATGTCTTA  788

seq1  GGTCTCAAAATAAAAAGTTCCAAAGGCAAGACAAATGAGATTTTTACATA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAAAATAAAAAGTTCCAAAGGCAAGACAAATGAGATTTTTACATA  838

seq1  AGCCATTTTTTTTTTTTTTACATTTTATATACATTTCCTCCAAGACTGTA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTTTTTTTTTTTTACATTTTATATACATTTCCTCCAAGACTGTA  888

seq1  AAGAGGATAGGGGCCCCACATCCCAGAATGCCTCAGTGCAAGCTACCTAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATAGGGGCCCCACATCCCAGAATGCCTCAGTGCAAGCTACCTAG  938

seq1  TATCGCTCCATGTTGGACAGACCAATAAATTACATGGTACCGGCCAGCAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGCTCCATGTTGGACAGACCAATAAATTACATGGTACCGGCCAGCAG  988

seq1  GGCCAAAAGGGTTCTGCCTGGGATGCCTGGCTATCTGTACTGCTCCAGCA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAAGGGTTCTGCCTGGGATGCCTGGCTATCTGTACTGCTCCAGCA  1038

seq1  AACCGAAAGAACCTCCCACAAGTACTCAGCAAACAGGAAAGGACACTCAA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAAAGAACCTCCCACAAGTACTCAGCAAACAGGAAAGGACACTCAA  1088

seq1  AGAATTC  1094
      |||||||
seq2  AGAATTC  1095

seq1: chr10_77636374_77637428
seq2: B6Ng01-302H20.g_66_1146

seq1  GAATTCCAGGTGCCTAGATTCTTCAAAGGAGGCAGCTAAGAACTCCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCCTAGATTCTTCAAAGGAGGCAGCTAAGAACTCCAGTA  50

seq1  CTTTCACTACGTACAGCTCAGGCAGGGACGTGCTGACTACCTCAACTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTACGTACAGCTCAGGCAGGGACGTGCTGACTACCTCAACTGCA  100

seq1  GGAAGAAGAAAAGCCATATCAGTTTGCAAAGAAGTTGTCAGGGAGACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGAAAAGCCATATCAGTTTGCAAAGAAGTTGTCAGGGAGACTGG  150

seq1  AGCCACCTGGAGCTCCTCTGCAGCAGCGAAGTGTGGCTGGTGGCCCCGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTGGAGCTCCTCTGCAGCAGCGAAGTGTGGCTGGTGGCCCCGGC  200

seq1  TTACTTTCATTCTGTGGCACAGCCTCCAGGGCCTCCTGGGCCAGTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCATTCTGTGGCACAGCCTCCAGGGCCTCCTGGGCCAGTTTTTT  250

seq1  CTCATTGAGGCGGAAGGCCATGAGGATGGCCCGGGTAAACTCCCTCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGAGGCGGAAGGCCATGAGGATGGCCCGGGTAAACTCCCTCTGTC  300

seq1  GGAGCGCCTCCCGGATCCGTCCAGGGGTCACACTGGTGTCCAGCTCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGCCTCCCGGATCCGTCCAGGGGTCACACTGGTGTCCAGCTCAAAT  350

seq1  GGGTCGAAGAGCATCTGGGCATCCAGGGAGAAGATGAGGAGGCCCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGAAGAGCATCTGGGCATCCAGGGAGAAGATGAGGAGGCCCTCTGT  400

seq1  GCTGGTGGCCGCCCAGCAGCGCCCTGTGGAGCAAGCAGCAAAGGGGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGCCGCCCAGCAGCGCCCTGTGGAGCAAGCAGCAAAGGGGCTTC  450

seq1  CTCAAACCTTGAAAGCCCACTCATCCCCTGCTTTGTAGAAGGTATAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCTTGAAAGCCCACTCATCCCCTGCTTTGTAGAAGGTATAAACA  500

seq1  AAACCATGGGCAGATGGTCTTTCTAGGGCTGCAGCTGCCCAGATGCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATGGGCAGATGGTCTTTCTAGGGCTGCAGCTGCCCAGATGCCCAA  550

seq1  TTCCTCTGGCTGTTCCAGGAAATCAGTGGGCTTCCCAGAACAGGGCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGGCTGTTCCAGGAAATCAGTGGGCTTCCCAGAACAGGGCAGAC  600

seq1  CTTCAGCCTTGAAGGCCATATAGTTCATGTCCAGCTGTGCCCACCATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCTTGAAGGCCATATAGTTCATGTCCAGCTGTGCCCACCATCCA  650

seq1  CACCAAGGGCATAGCCACACACTGGGCATAGTGAGAAGTGGCTCACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGGGCATAGCCACACACTGGGCATAGTGAGAAGTGGCTCACAAAA  700

seq1  AAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGCTGCAGAATTGTGTGGCA  750
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAGAAAGAAGAAGCTGCAGAATTGTGTGGCA  750

seq1  GGACAGATGGGACCACTCTGGGCCCCAGGCTGTGGTCTGTGGATGTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATGGGACCACTCTGGGCCCCAGGCTGTGGTCTGTGGATGTCTGG  800

seq1  TCTACCTTCCACA-GTGGGAAGTGGGACATAGGGATGATCGTCTCCGAAC  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTCCACAGGTGGGAAGTGGGACATAGGGATGATCGTCTCCGAAC  850

seq1  GTGCCTGACACAGGA-TAACAACACAGCATACC-TCAGTCTGTCCT-CTC  896
      ||||||||||||||| ||||||||||||||||| |||||||||||| |||
seq2  GTGCCTGACACAGGATTAACAACACAGCATACCTTCAGTCTGTCCTCCTC  900

seq1  CATTAGTGCTGCAGGGCACAGC-TCAGGAC-CCTG--CCCTGC-CCTGC-  940
      |||||||||||||||||||||| ||||||| ||||   ||||| | ||| 
seq2  CATTAGTGCTGCAGGGCACAGCTTCAGGACTCCTGGCTCCTGCTCTTGCT  950

seq1  CCTGC-CCTAAC-GGAAC-ACA-TGTACC-TAGCAGGC-TTGAGGCCTAA  984
      ||||| |||||| ||||| ||| |||||| |||||||| |||||||||||
seq2  CCTGCTCCTAACGGGAACTACATTGTACCTTAGCAGGCTTTGAGGCCTAA  1000

seq1  -GCAGATCCCTGAACACGCTGA--GGGTCAGA--GGCAGGG-TGGGTAAG  1028
       |||||||| ||||||||||||  || |||||  | ||||| ||||||||
seq2  GGCAGATCCTTGAACACGCTGAAGGGTTCAGAAGGCCAGGGTTGGGTAAG  1050

seq1  GCA-CTAT--CACTAGCTGAGGTG-CTGAGA  1055
      ||| ||||  |||||||||||||| ||||||
seq2  GCACCTATTCCACTAGCTGAGGTGCCTGAGA  1081