BAC Information

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BAC

Clone NameB6Ng01-305K23
Chromosome10 (Build37)
Map Location 72,911,038 - 72,912,280
singlet/doubletsinglet
Overlap geneLOC432471
Upstream geneZwint, LOC544705
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305K23.bB6Ng01-305K23.g
ACCGA098914GA098915
length1,2331,171
definitionB6Ng01-305K23.b B6Ng01-305K23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagtcaatacttaaataacatgtgaggaaaactagcatatgac
atggataacataaataaaagaaatatctgaggacacagtaatgaaagaaa
acacacaggaatttcttcaaacctagagtggttttcttcagaaagacact
aacaagttaattgaacagaacaggatgtaataatgctattatcaataata
taggcaaaacataaagagctcttgattgtaaaataacaacacacagagcc
actggacatggtgtttgacaataaaataaactcaggcactatttaaaatg
ttgtaagttaaaattagaaaatgtcaaaaaagcagaacaaatgaatgaga
cagaaatatgattcgtagtcctgtaaacacgaataaacaggatcaatgga
gaattacaggcaaagcaagggctcaggggtggctgagtgatgctgcccct
ccggaggacccaggttcagtctaggcatctacatggcgatccacaaccac
ctgtagtggcacttccagtggtccaaggcttctgcaggcaggtacacagg
cgctgcatgcacagggtacacagacatacaagcagacaagcacacctaaa
ataaaataaataatcggagaaagaaaagggtaagagagctgagcacagcg
gctcatatttgtaattatggcagctaggaaagaaggaataccacaagtct
gaaaacaactgatcaccatagtgagtttgaagcaagcctcatcaacagaa
cctaaacctttcttgaaactaaaaccaaccaaagatatgtatatgggaaa
ataacggacgaaaggttaacaaacatggctaaaattttttccttactact
aaaaatcgtgatttgtaaatttaaaaatactcagctcagtgtaaccatta
agcatacacactctgagtcagcatgttacacagagtggattaaaggaaaa
cacaaattagaatgcaatgttgtcagacacctcaatggttctacaacata
aaaggaatggacacatataataattgtcttattgggtttctaaatttata
ctaggacaacttggaatataaacatcaattcagaggcaaacctcttagaa
atcatattagggtctggtcacaaaagacccaagttaaccaagcaaccttt
agagaaatagacaagaacacctaaggtaaagagttcagcattggagtcag
tgagggtgtgcacacacttctggggggcagtca

gaattctcacctgaggactacagaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagagaaatgctcctccattgttggtg
ggattgcaagcttatacaaccactctggaaatcagtctggcggtacctca
gaaaactggatatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagacgttccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataataggcagaagctggaaagaacccagag
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaattcatgaaattcctaggcaa
atggatggacctggagggtatcatcctgagtgaggtaacccaatcagaaa
ggaactcacacaatatgtattcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacgcataaaactcaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatctagagcctgccatatccagggttccatccaataat
cagcttccaaacgctgacaccattgcatatattagcaagattttgctgaa
aggacccagatatagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacagtcagctattggatggagcacagggcccca
ttagaggagctagagaaagtactcaaggagctaacgatctgcaactctat
aggtagacagcattatgactaccagtacccgagctctgacttagctgcat
atgtatcaaaagatgcctagtcgcttatcactgaagagagtccatgaact
gccaagcttatatgcctagtacagcatgcagtaaacttggcaatgtgtag
atatgagggagattggtgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_72911038_72912280
seq2: B6Ng01-305K23.b_46_1278 (reverse)

seq1  TGACTGCCCCC----AGACTGCTGCACA-CCTCACCTGGCCTCCCATCCC  45
      |||||||||||    ||  || |||||| ||||||   | |||| ||  |
seq2  TGACTGCCCCCCAGAAGTGTG-TGCACACCCTCAC--TGACTCCAAT-GC  46

seq1  TCTACTTCTTTTTCCCTTAGTTGTTTCCTTGTCTATCTCT-TGAGGGTTT  94
      |  |   || ||| |||||| ||||  ||||||||| ||| | | ||  |
seq2  TGAA---CTCTTTACCTTAGGTGTT--CTTGTCTATTTCTCTAAAGG--T  89

seq1  TCCTTTGTTTACTTGTGTCTTTTTTTGGTGGACCAGACCCTAATATGATT  144
      | ||| ||| ||||| ||||||| |     ||||||||||||||||||||
seq2  TGCTTGGTTAACTTGGGTCTTTTGT-----GACCAGACCCTAATATGATT  134

seq1  TCCTAAGA-GTTTGCTTCTGAA-TGATGTTTATATTCCAAGTTTGTCTAG  192
      | |||||| |||||| |||||| ||||||||||||||||||||   ||||
seq2  T-CTAAGAGGTTTGCCTCTGAATTGATGTTTATATTCCAAGTTGTCCTAG  183

seq1  TATAAATTTAGAAACCCAATAAGACAATTATTATATGTGTCCATTCCTTT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTTAGAAACCCAATAAGACAATTATTATATGTGTCCATTCCTTT  233

seq1  TATGTTGTAGAACCATTGAGGTGTCTGACAACATTGCATTCTAATTTGTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTAGAACCATTGAGGTGTCTGACAACATTGCATTCTAATTTGTG  283

seq1  TTTTTCCTTTAATCCACTCTGTGTAACATGCTGACTCAGAGTGTGTATGC  342
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTCCTTTAATCCACTCTGTGTAACATGCTGACTCAGAGTGTGTATGC  332

seq1  TTAATGGTTACACTGAGCTGAGTATTTTTAAATTTACAAATCACGATTTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTTACACTGAGCTGAGTATTTTTAAATTTACAAATCACGATTTT  382

seq1  TAGTAGTAAGGAAAAAATTTTAGCCATGTTTGTTAACCTTTCGTCCGTTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTAAGGAAAAAATTTTAGCCATGTTTGTTAACCTTTCGTCCGTTA  432

seq1  TTTTCCCATATACATATCTTTGGTTGGTTTTAGTTTCAAGAAAGGTTTAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATATACATATCTTTGGTTGGTTTTAGTTTCAAGAAAGGTTTAG  482

seq1  GTTCTGTTGATGAGGCTTGCTTCAAACTCACTATGGTGATCAGTTGTTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTGATGAGGCTTGCTTCAAACTCACTATGGTGATCAGTTGTTTT  532

seq1  CAGACTTGTGGTATTCCTTCTTTCCTAGCTGCCATAATTACAAATATGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGTGGTATTCCTTCTTTCCTAGCTGCCATAATTACAAATATGAG  582

seq1  CCGCTGTGCTCAGCTCTCTTACCCTTTTCTTTCTCCGATTATTTATTTTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGTGCTCAGCTCTCTTACCCTTTTCTTTCTCCGATTATTTATTTTA  632

seq1  TTTTAGGTGTGCTTGTCTGCTTGTATGTCTGTGTACCCTGTGCATGCAGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTGTGCTTGTCTGCTTGTATGTCTGTGTACCCTGTGCATGCAGC  682

seq1  GCCTGTGTACCTGCCTGCAGAAGCCTTGGACCACTGGAAGTGCCACTACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTACCTGCCTGCAGAAGCCTTGGACCACTGGAAGTGCCACTACA  732

seq1  GGTGGTTGTGGATCGCCATGTAGATGCCTAGACTGAACCTGGGTCCTCCG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTGTGGATCGCCATGTAGATGCCTAGACTGAACCTGGGTCCTCCG  782

seq1  GAGGGGCAGCATCACTCAGCCACCCCTGAGCCCTTGCTTTGCCTGTAATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCAGCATCACTCAGCCACCCCTGAGCCCTTGCTTTGCCTGTAATT  832

seq1  CTCCATTGATCCTGTTTATTCGTGTTTACAGGACTACGAATCATATTTCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGATCCTGTTTATTCGTGTTTACAGGACTACGAATCATATTTCT  882

seq1  GTCTCATTCATTTGTTCTGCTTTTTTGACATTTTCTAATTTTAACTTACA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATTCATTTGTTCTGCTTTTTTGACATTTTCTAATTTTAACTTACA  932

seq1  ACATTTTAAATAGTGCCTGAGTTTATTTTATTGTCAAACACCATGTCCAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAATAGTGCCTGAGTTTATTTTATTGTCAAACACCATGTCCAG  982

seq1  TGGCTCTGTGTGTTGTTATTTTACAATCAAGAGCTCTTTATGTTTTGCCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGTGTGTTGTTATTTTACAATCAAGAGCTCTTTATGTTTTGCCT  1032

seq1  ATATTATTGATAATAGCATTATTACATCCTGTTCTGTTCAATTAACTTGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTGATAATAGCATTATTACATCCTGTTCTGTTCAATTAACTTGT  1082

seq1  TAGTGTCTTTCTGAAGAAAACCACTCTAGGTTTGAAGAAATTCCTGTGTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCTTTCTGAAGAAAACCACTCTAGGTTTGAAGAAATTCCTGTGTG  1132

seq1  TTTTCTTTCATTACTGTGTCCTCAGATATTTCTTTTATTTATGTTATCCA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCATTACTGTGTCCTCAGATATTTCTTTTATTTATGTTATCCA  1182

seq1  TGTCATATGCTAGTTTTCCTCACATGTTATTTAAGTATTGACTAAGAATT  1242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATGCTAGTTTTCCTCACATGTTATTTAAGTATTGACTAAGAATT  1232

seq1  C  1243
      |
seq2  C  1233


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