BAC Information

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BAC

Clone NameB6Ng01-306G01
Chromosome12 (Build37)10 (Build37)
Map Location 116,179,910 - 116,180,43143,698,723 - 43,699,786
singlet/doubletsingletsinglet
Overlap geneIgh
Upstream geneIghv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906
Downstream geneEG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306G01.bB6Ng01-306G01.g
ACCGA099433GA099434
length9481,065
definitionB6Ng01-306G01.b B6Ng01-306G01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,179,910 - 116,180,431)(43,698,723 - 43,699,786)
sequence
gaattcagaactcttcagctggggaatggtggtaatgaagtgttcccgca
acacagactgttgagaaggattcaactgcgtgaattcagaactcttcagc
tggggaacagggtacccgtaagtatagctttacaaggtaagtctggcctt
gaactttctaacgaaattcaagatagtctatcagaagtaaagtgggaaat
agctttacaaggtaagtctggccttgaactttctaacgaaattcaagaca
gtctatcagaagtaaagtgggaaatagctttacaaggtaagtctggcctt
gaactttctaacgaaattcaagacagtctatcagaagtaaagtgggaaat
agctttacaaggtaagtctggtcttgaactttctaacgaaattcaagaca
gtctatcagaagtaaagtgggaaatagctttacaaggtatgtttgacctt
gaactttctctagtgttaggagcctttttgttccttttcacatgttatca
agtggttaaggcagggctgaaaattttggatgaaattcaggtcaatctat
cagaagtaaagcggggagagagagtaggagcaaagaggaaatatggtaca
caaaataagtatacaggcctttccaagggtcttgaacccgaggaaaagtt
aaggtcaggtaagaatacctggggagagattggaaggaaggaaaagaaaa
aagaaaagaaaaaagatcaattagcggaggtctctaggagaaggagccta
tactcatcactagatgagctcaaaggagccagttcttagtagttctgaat
cagatgaaaagctattaggggcctggaaggcgctctcccgcgcaggtgaa
gccactggacaactaacaaagatcgtccagggacctcaggagtccttctc
agattttgtggccagaatgacagaaggcagcagaggcgtatttttgga
gaattccttctaggcttttggaagggatccattgctacacattttgacac
tgtgtagaatgccgggagtctttatttacaaaagaaatattaacttagaa
cagggcttgagatggcctaacttgggggtctctaagtgacagagagattt
acatgttaaagcagttataacatggcttaaagtaagtggccaagccagcc
aagaggaactcataggccaggcttctctgaagcccaggcacagccatttc
tgggagagtggccatactctcctctgtccttgccctcctgtcagtggggt
cctgtgtgccaggcaggagggaacagaaattaaccacgagttctgcttct
ttgcttccgtggtggttattcagatggctgatctatgaagagcctggatt
ccaaggtgtccccttcattctggagcccggagaataccctgacctatcct
tctgggataccgaggaagcgtacatcggatccatgcggcctctgaaaatg
gtaacatgacattgaagctggttttctgaaggcagcaagtctcttagctt
gacctccataatctaccagatgtggctttgaacaataaaagtagctttta
ttgctttacatgcatctattgctggatagaaagagtagaaacaacttcct
ggttaagaaaggtggacaagactatgccctttgcacggagagcatcttct
gcctcacagagtagatgtctgcaccaacttcagcccagagaggcctagtg
agtgaagaactgtttgtggaaagtggaagcaaccccattcggtgggatga
gaggcagggcagggcatagttaggaaaaccatctgaatgcacagtcaaat
cttaaacgggagcagaattgcccccactggagctggcagaggatgcgtat
gagccagggcaggcacagagctgggcagggaaatgctgaggaccagcatc
agagttagtgccaggaggcaggcctgagtgtgaaggagagctggggtgag
gggtcaatgcccattgtcttagtagggtgttatgctgtgaatcgaacacc
atgacccaaggcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116179910_116180431
seq2: B6Ng01-306G01.b_43_564

seq1  GAATTCAGAACTCTTCAGCTGGGGAACGGTGGTAATGAAGTGTTCCCGTA  50
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  GAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCGCA  50

seq1  AAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGC  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGC  100

seq1  TGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGTCTT  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGCCTT  150

seq1  GAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGGAAT  200
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  GAACTTTCTAACGAAATTCAAGATAGTCTATCAGAAGTAAAGTGGGAAAT  200

seq1  AGCTTTACAAGGTAAGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTACAAGGTAAGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACA  250

seq1  GTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGTCTT  300
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGCCTT  300

seq1  GAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAAT  350

seq1  AGCTTTACAAGGTACGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACA  400
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACA  400

seq1  GTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGACCTT  450

seq1  GAACTTTTTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCA  500
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCA  500

seq1  AGTGGTTAAGGCAGGGCTGAAA  522
      ||||||||||||||||||||||
seq2  AGTGGTTAAGGCAGGGCTGAAA  522

seq1: chr10_43698723_43699786
seq2: B6Ng01-306G01.g_69_1133 (reverse)

seq1  GTTGCCTT-GGTCATGGTG-TCTGTTCACAGCATAACACCCTAACTAAGA  48
      |||||||| |||||||||| ||  |||||||||||||||||| |||||||
seq2  GTTGCCTTGGGTCATGGTGTTCGATTCACAGCATAACACCCT-ACTAAGA  49

seq1  CAATGGGCATTGACCCCTCACCCCAGCTCTCCTTCACCACTCAGCCCTGC  98
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  CAATGGGCATTGACCCCTCACCCCAGCTCTCCTTCA-CACTCAGGCCTGC  98

seq1  CTCCTGGCACTACCTCTG-TGCTGGTCCTCAGCA-TTCCCTGCCCAGCTC  146
      |||||||||||| ||||| ||||||||||||||| |||||||||||||||
seq2  CTCCTGGCACTAACTCTGATGCTGGTCCTCAGCATTTCCCTGCCCAGCTC  148

seq1  TGTGCCTGCCCTGGCCTCATACGCATCCTCTGCCAGCTCCAGTGGGGGCA  196
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGCCCTGG-CTCATACGCATCCTCTGCCAGCTCCAGTGGGGGCA  197

seq1  ATTCTGCTCCCGTTTAAGATTTGACTGTGCATTCAGATGGTTTTCCTAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTCCCGTTTAAGATTTGACTGTGCATTCAGATGGTTTTCCTAAC  247

seq1  TATGCCCTGCCCTGCCTCTCATCCCACCGAATGGGGTTGCTTCCACTTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTGCCCTGCCTCTCATCCCACCGAATGGGGTTGCTTCCACTTTC  297

seq1  CACAAACAGTTCTTCACTCACTAGGCCTCTCTGGGCTGAAGTTGGTGCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAGTTCTTCACTCACTAGGCCTCTCTGGGCTGAAGTTGGTGCAG  347

seq1  ACATCTACTCTGTGAGGCAGAAGATGCTCTCCGTGCAAAGGGCATAGTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTACTCTGTGAGGCAGAAGATGCTCTCCGTGCAAAGGGCATAGTCT  397

seq1  TGTCCACCTTTCTTAACCAGGAAGTTGTTTCTACTCTTTCTATCCAGCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACCTTTCTTAACCAGGAAGTTGTTTCTACTCTTTCTATCCAGCAA  447

seq1  TAGATGCATGTAAAGCAATAAAAGCTACTTTTATTGTTCAAAGCCACATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCATGTAAAGCAATAAAAGCTACTTTTATTGTTCAAAGCCACATC  497

seq1  TGGTAGATTATGGAGGTCAAGCTAAGAGACTTGCTGCCTTCAGAAAACCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGATTATGGAGGTCAAGCTAAGAGACTTGCTGCCTTCAGAAAACCA  547

seq1  GCTTCAATGTCATGTTACCATTTTCAGAGGCCGCATGGATCCGATGTACG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAATGTCATGTTACCATTTTCAGAGGCCGCATGGATCCGATGTACG  597

seq1  CTTCCTCGGTATCCCAGAAGGATAGGTCAGGGTATTCTCCGGGCTCCAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCGGTATCCCAGAAGGATAGGTCAGGGTATTCTCCGGGCTCCAGA  647

seq1  ATGAAGGGGACACCTTGGAATCCAGGCTCTTCATAGATCAGCCATCTGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGGACACCTTGGAATCCAGGCTCTTCATAGATCAGCCATCTGAA  697

seq1  TAACCACCACGGAAGCAAAGAAGCAGAACTCGTGGTTAATTTCTGTTCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACCACGGAAGCAAAGAAGCAGAACTCGTGGTTAATTTCTGTTCCC  747

seq1  TCCTGCCTGGCACACAGGACCCCACTGACAGGAGGGCAAGGACAGAGGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTGGCACACAGGACCCCACTGACAGGAGGGCAAGGACAGAGGAG  797

seq1  AGTATGGCCACTCTCCCAGAAATGGCTGTGCCTGGGCTTCAGAGAAGCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGCCACTCTCCCAGAAATGGCTGTGCCTGGGCTTCAGAGAAGCCT  847

seq1  GGCCTATGAGTTCCTCTTGGCTGGCTTGGCCACTTACTTTAAGCCATGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATGAGTTCCTCTTGGCTGGCTTGGCCACTTACTTTAAGCCATGTT  897

seq1  ATAACTGCTTTAACATGTAAATCTCTCTGTCACTTAGAGACCCCCAAGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCTTTAACATGTAAATCTCTCTGTCACTTAGAGACCCCCAAGTT  947

seq1  AGGCCATCTCAAGCCCTGTTCTAAGTTAATATTTCTTTTGTAAATAAAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCTCAAGCCCTGTTCTAAGTTAATATTTCTTTTGTAAATAAAGA  997

seq1  CTCCCGGCATTCTACACAGTGTCAAAATGTGTAGCAATGGATCCCTTCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGGCATTCTACACAGTGTCAAAATGTGTAGCAATGGATCCCTTCCA  1047

seq1  AAAGCCTAGAAGGAATTC  1064
      ||||||||||||||||||
seq2  AAAGCCTAGAAGGAATTC  1065