BAC Information

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BAC

Clone NameB6Ng01-306I03
Chromosome10 (Build37)
Map Location 106,700,740 - 106,879,052
singlet/doubletdoublet
Overlap geneLin7a
Upstream genePpfia2, Olfr1556-ps1, 8430416H19Rik
Downstream geneMyf5, Myf6, Ptprq, EG628870, Ppp1r12a, Pawr, EG667814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306I03.bB6Ng01-306I03.g
ACCGA099525GA099526
length1,1991,053
definitionB6Ng01-306I03.b B6Ng01-306I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,877,863 - 106,879,052)(106,700,740 - 106,701,837)
sequence
gaattcattgaagtcactattcattctcatactgccacaccatggaaccc
aagaagggagttcataacactttgtttattagaaatgagctaagggatca
gattttaagtgtcctcaataacttctctcccttctcccaaaggaaactca
gttttctcaagtaaagactaatggaaggggttttgcatttcaataaccac
ataagcttttacattccctatgctgctgagaggcctatgtccctagtaga
agatacttacttatgcctttaaagcttgcttcatcttaggtatttagcca
tcatggaacagacataacaaagtctaaactactttaagtgctttacgtca
tttgcatttcgcttcttagcactctgtttggtttggttattctgtttcat
tttatttatttattttttgcacttttttattagatattttctttatttac
atttcaaatgttatcccgaaagttccctataccctccccccaccctgttc
ccctacacccactcccacttcttggccttggcattcccctgtactggggc
atataaatttgcaagaccaaggggcctctcttcccagtgatggccgacta
ggccatcttctgctacatatgcagctagagacatgagctctgggggtact
ggttagttcatattgttgttccacctatagggttgcagatcccttcagct
ccttcagtactttctctagctcctccattgggggggccctgtgttccatc
ctatagatgactgtgagcatcgacttctgtatttgccaggcactggtcta
gcctatggatatgtatataaaacatatagttaaacaaagatatatataca
tatacatgcatatatatattacatgcatatatatgttattattattagca
atgctgtctaataaaagacaaaagtaccactatcagactttcccatgcca
tattagcagtgagacatgaaattatttgtggttatatctttttgtcagta
gttcccttgaaatggaaaatgaacatgggaattgctgtgattatattttt
catccaattaggaaaaatggaaaattcagccttggttaaaccctacataa
gcggatcatctcaagaaaacacttaaagggttctcaagacatatgtcaag
gtacagaatactttgccagtcaacttcacacacctcttaaccccagaga

gaattcagaaatggcctttatgtctctttcttcctaatatccttaattaa
tcctacagtgccaaatttagaggaaaattatattgctggctggaataagg
taagctggatttaaagaaatgaaaactacaagttgtcaagagaaagctat
ttgaatcttcttttaaaggaggctaaaatctgggcccaggagacagttca
tcgggtgacgtgtttgtgaccaagactgatggcctgagttcaatccccag
cacccacgtggaaggggagaactggctctgacctccagccttgcactctg
gtgcttctgcatagtcctccctcacacataaacaccccgcaaataaacac
aatgaaaattgcctgaagatgagacccaaagcaaggtctctcgggtgata
aggatggtgggtgctcaccatcggtaaattgtcagcctaacagaaaattc
actgacatcattgtcactgcctgccttaagtttctatgaaatcctttaga
tcttgccggcttaactagatggccctaatcaaagtctgaaagtgtatctc
ttaagactagagggggtgaaatcactttattatctacatgcaggaaagaa
aatatcctagtttccgctgaaggaaaatgaacgacttccaaaacagttca
caatacagattaaaacatacaaatgtatggtatcatttcttcttggggat
acattaataactaattccatgcttctgaacccattctaattatttcataa
acccctcaacaagtaacatggagacttatttctaactttatcccaagtcc
attattgtcctggtcagtaaagaatacaaggatcctgtttaaaaagagct
ttgccttgctttgctttgctttgccttgccttgccttctttcctttcttt
cctttcctttcctttccttcccttccttccttccttccttcctttccttc
cttccttcttcttcttcttttccttttccttccttttctttccttttcct
ttctttttctttctttttttttcattgaaggcattcttttttctttaatt
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106877863_106879052
seq2: B6Ng01-306I03.b_46_1244 (reverse)

seq1  TCTCTGGG--TAGGAG--GTGTGAAGTTGGACCTGCCAAAATGTATCTGT  46
      ||||||||  || |||  |||||||||||   ||| |||| | | |||| 
seq2  TCTCTGGGGTTAAGAGGTGTGTGAAGTTG--ACTGGCAAAGTAT-TCTG-  46

seq1  TACATTGACATATGCTTTTGGAGGGACCCTT--AGTGTTTCTTTGAGAAT  94
      ||| ||||||||||  ||  ||   ||||||  |||||||  ||||| ||
seq2  TACCTTGACATATGTCTTGAGA---ACCCTTTAAGTGTTTTCTTGAG-AT  92

seq1  GATCTGTTTATTGTA-GGTTTAACCAAAGCTGAATTT--CA-TTTTCCT-  139
      |||| | ||| |||| ||||||||||| |||||||||  || ||||||| 
seq2  GATCCGCTTA-TGTAGGGTTTAACCAAGGCTGAATTTTCCATTTTTCCTA  141

seq1  ATTGGATG-AAAATAT-ATCACAGC-ATTCCCATG-TCA-TTTCCATTTC  184
      |||||||| ||||||| |||||||| ||||||||| ||| ||||||||||
seq2  ATTGGATGAAAAATATAATCACAGCAATTCCCATGTTCATTTTCCATTTC  191

seq1  -AGGGAACTACTGAACAAAAAGATATAA-CACAAAT-ATTTCATGTCTCA  231
       |||||||||||| |||||||||||||| ||||||| |||||||||||||
seq2  AAGGGAACTACTG-ACAAAAAGATATAACCACAAATAATTTCATGTCTCA  240

seq1  CTGCTAATATGGCATGGGAAAGTCTGATAGTGGTACTTTTGTCTTTTATT  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAATATGGCATGGGAAAGTCTGATAGTGGTACTTTTGTCTTTTATT  290

seq1  AGACAGCATTGCTAATAATAATAACATATATATGCATGTAATATATATAT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCATTGCTAATAATAATAACATATATATGCATGTAATATATATAT  340

seq1  GCATGTATATGTATATATATCTTTGTTTAACTATATGTTTTATATACATA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATATGTATATATATCTTTGTTTAACTATATGTTTTATATACATA  390

seq1  TCCATAGGCTAGACCAGTGCCTGGCAAATACAGAAGTCGATGCTCACAGT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGGCTAGACCAGTGCCTGGCAAATACAGAAGTCGATGCTCACAGT  440

seq1  CATCTATAGGATGGAACACAGGGCCCCCCCAATGGAGGAGCTAGAGAAAG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATAGGATGGAACACAGGGCCCCCCCAATGGAGGAGCTAGAGAAAG  490

seq1  TACTGAAGGAGCTGAAGGGATCTGCAACCCTATAGGTGGAACAACAATAT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGGAGCTGAAGGGATCTGCAACCCTATAGGTGGAACAACAATAT  540

seq1  GAACTAACCAGTACCCCCAGAGCTCATGTCTCTAGCTGCATATGTAGCAG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAACCAGTACCCCCAGAGCTCATGTCTCTAGCTGCATATGTAGCAG  590

seq1  AAGATGGCCTAGTCGGCCATCACTGGGAAGAGAGGCCCCTTGGTCTTGCA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCCTAGTCGGCCATCACTGGGAAGAGAGGCCCCTTGGTCTTGCA  640

seq1  AATTTATATGCCCCAGTACAGGGGAATGCCAAGGCCAAGAAGTGGGAGTG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATGCCCCAGTACAGGGGAATGCCAAGGCCAAGAAGTGGGAGTG  690

seq1  GGTGTAGGGGAACAGGGTGGGGGGAGGGTATAGGGAACTTTCGGGATAAC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGGGGAACAGGGTGGGGGGAGGGTATAGGGAACTTTCGGGATAAC  740

seq1  ATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAAGTGCAAAAAATAA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAAGTGCAAAAAATAA  790

seq1  ATAAATAAAATGAAACAGAATAACCAAACCAAACAGAGTGCTAAGAAGCG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAATGAAACAGAATAACCAAACCAAACAGAGTGCTAAGAAGCG  840

seq1  AAATGCAAATGACGTAAAGCACTTAAAGTAGTTTAGACTTTGTTATGTCT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAATGACGTAAAGCACTTAAAGTAGTTTAGACTTTGTTATGTCT  890

seq1  GTTCCATGATGGCTAAATACCTAAGATGAAGCAAGCTTTAAAGGCATAAG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATGATGGCTAAATACCTAAGATGAAGCAAGCTTTAAAGGCATAAG  940

seq1  TAAGTATCTTCTACTAGGGACATAGGCCTCTCAGCAGCATAGGGAATGTA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATCTTCTACTAGGGACATAGGCCTCTCAGCAGCATAGGGAATGTA  990

seq1  AAAGCTTATGTGGTTATTGAAATGCAAAACCCCTTCCATTAGTCTTTACT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTATGTGGTTATTGAAATGCAAAACCCCTTCCATTAGTCTTTACT  1040

seq1  TGAGAAAACTGAGTTTCCTTTGGGAGAAGGGAGAGAAGTTATTGAGGACA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAACTGAGTTTCCTTTGGGAGAAGGGAGAGAAGTTATTGAGGACA  1090

seq1  CTTAAAATCTGATCCCTTAGCTCATTTCTAATAAACAAAGTGTTATGAAC  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATCTGATCCCTTAGCTCATTTCTAATAAACAAAGTGTTATGAAC  1140

seq1  TCCCTTCTTGGGTTCCATGGTGTGGCAGTATGAGAATGAATAGTGACTTC  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTTGGGTTCCATGGTGTGGCAGTATGAGAATGAATAGTGACTTC  1190

seq1  AATGAATTC  1190
      |||||||||
seq2  AATGAATTC  1199


seq1: chr10_106700740_106701837
seq2: B6Ng01-306I03.g_69_1121

seq1  GAATTCAGAAATGGCCTTTATGTCTCTTTCTTCCTAATATCCTTAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATGGCCTTTATGTCTCTTTCTTCCTAATATCCTTAATTAA  50

seq1  TCCTACAGTGCCAAATTTAGAGGAAAATTATATTGCTGGCTGGAATAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGTGCCAAATTTAGAGGAAAATTATATTGCTGGCTGGAATAAGG  100

seq1  TAAGCTGGATTTAAAGAAATGAAAACTACAAGTTGTCAAGAGAAAGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGGATTTAAAGAAATGAAAACTACAAGTTGTCAAGAGAAAGCTAT  150

seq1  TTGAATCTTCTTTTAAAGGAGGCTAAAATCTGGGCCCAGGAGACAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTTCTTTTAAAGGAGGCTAAAATCTGGGCCCAGGAGACAGTTCA  200

seq1  TCGGGTGACGTGTTTGTGACCAAGACTGATGGCCTGAGTTCAATCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTGACGTGTTTGTGACCAAGACTGATGGCCTGAGTTCAATCCCCAG  250

seq1  CACCCACGTGGAAGGGGAGAACTGGCTCTGACCTCCAGCCTTGCACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACGTGGAAGGGGAGAACTGGCTCTGACCTCCAGCCTTGCACTCTG  300

seq1  GTGCTTCTGCATAGTCCTCCCTCACACATAAACACCCCGCAAATAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTGCATAGTCCTCCCTCACACATAAACACCCCGCAAATAAACAC  350

seq1  AATGAAAATTGCCTGAAGATGAGACCCAAAGCAAGGTCTCTCGGGTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATTGCCTGAAGATGAGACCCAAAGCAAGGTCTCTCGGGTGATA  400

seq1  AGGATGGTGGGTGCTCACCATCGGTAAATTGTCAGCCTAACAGAAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTGGGTGCTCACCATCGGTAAATTGTCAGCCTAACAGAAAATTC  450

seq1  ACTGACATCATTGTCACTGCCTGCCTTAAGTTTCTATGAAATCCTTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATCATTGTCACTGCCTGCCTTAAGTTTCTATGAAATCCTTTAGA  500

seq1  TCTTGCCGGCTTAACTAGATGGCCCTAATCAAAGTCTGAAAGTGTATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCGGCTTAACTAGATGGCCCTAATCAAAGTCTGAAAGTGTATCTC  550

seq1  TTAAGACTAGAGGGGGTGAAATCACTTTATTATCTACATGCAGGAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACTAGAGGGGGTGAAATCACTTTATTATCTACATGCAGGAAAGAA  600

seq1  AATATCCTAGTTTCCGCTGAAGGAAAATGAACGACTTCCAAAACAGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTAGTTTCCGCTGAAGGAAAATGAACGACTTCCAAAACAGTTCA  650

seq1  CAATACAGATTAAAACATACAAATGTATGGTATCATTTCTTCTTGGGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGATTAAAACATACAAATGTATGGTATCATTTCTTCTTGGGGAT  700

seq1  ACATTAATAACTAATTCCATGCTTCTGAACCCATTCTAATTATTTCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATAACTAATTCCATGCTTCTGAACCCATTCTAATTATTTCATAA  750

seq1  ACCCCTCAACAAGTAACATGGAGACTTATTTCTAACTTTATCCCAAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCAACAAGTAACATGGAGACTTATTTCTAACTTTATCCCAAGTCC  800

seq1  ATTATTGTCCTGGTCAGTAAAGAATACAAGGATCCTGTTTAAAAAGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTCCTGGTCAGTAAAGAATACAAGGATCCTGTTTAAAAAGAGCT  850

seq1  TTGCCTTGCTTTGCTTTGCTTTGCCTTGCCTTGCCTTCTTTCCTTTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGCCTTGCTTTGCTTTGCTTTGCCTTGCCTTGCCTTCTTTCC-TTTCTT  899

seq1  TCCTTTCCTTTCCTTTCCTTCCCTTCCCTTCCCTTTCCTTTCCTTTCCTT  950
      |||||||||||||||||||||||||||       |||| ||||||  | |
seq2  TCCTTTCCTTTCCTTTCCTTCCCTTCC-------TTCC-TTCCTT--CCT  939

seq1  TCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTTTTTCCTTTTTCCT  1000
      ||||||||||  | ||||||  |||  |||  ||| |||||||||| |  
seq2  TCCTTTCCTT--CCTTCCTT--CTT--CTT--CTTCTTTTCCTTTTCC--  979

seq1  TTTTCCTTTTTCCTTTTTCCTTTTTCCTTTTTCCTTTTTTTTCTTTTCCT  1050
               |||||||    | ||||||||| |      |||||||| ||
seq2  ---------TTCCTTT----TCTTTCCTTTTCC------TTTCTTTTTCT  1010

seq1  TTTTTTTTTTTTCATTTGGAAGGCAATTTCTTTTTCTTTTTTATTAGA  1098
      || |||||||||||||  |||||||  |||||||| | ||| ||||||
seq2  TTCTTTTTTTTTCATT--GAAGGCA--TTCTTTTT-TCTTTAATTAGA  1053


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