BAC Information

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BAC

Clone NameB6Ng01-306K15
Chromosome10 (Build37)
Map Location 28,070,159 - 28,071,319
singlet/doubletsinglet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306K15.bB6Ng01-306K15.g
ACCGA099634GA099635
length1,1461,142
definitionB6Ng01-306K15.b B6Ng01-306K15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctggattctatttttaagcatcagctatctagtttctgggctc
tatgacgccatcttatctcctgagtcccctaactctgaccttagtaatct
tgtgagtttccttgcatctggttttagggagatgttctacaattcctgtc
aatcaggaatcagactttctgctatgctgtcccttttcatcttttaattg
ataaaaggtatatcaagccaataatctaggcattgtggaatttccccctg
ctagaccttttcaatgagaaacatacacacagacacatgcacacacacac
atattttaaatccaaaaatgtttcataattcatattgacttttcaaattc
aagtctaaagacttttcacttaatgttttctttgctgcatcttttttttt
tactacccatggtttttgtatctttttttgtgtgtgttccttttgagaca
ggttccagtgtagctcagggttgcctaccgctttattatttcactacata
gttgagaatggtcttgaggtttctcagagctaggctcaagccccattctt
tggcatgtggctacagtcaaaccttcatagcctggctgcactcctgccac
agagaagggatcattgtgttctaggaatcactcagtacccatcttacgtg
accatgagagaatctgcagggtcttctggggtctgtagggtagagcagta
gtaactgttgaaggatccagacattggaagacccccaaatcactctgtgc
ctgtcagtgtggagaaaggttgcgtttcaccctgagaaagggacaggcag
catggcagataagacaagagccttttgtcatgaattaaacccacactgtt
ctagataaacctttagctgaatggccatggtagtccagaccaagcttctg
tccccaaaacatgacatcatcaagctggtggatgaactggttgggcagtg
tcatcaatacctcctagatcaggcctaatatgtttgttggtgtctgttgt
ctgaacctccaggagaaagcaagtccacagtcatgtcactgtagacttct
ctgttcctggaggttccagaagaaaccaagattacattccaaggctctac
tgatgaatggaagggaaaggaatcctgctgattgatttctgacaca
gaattctttgttgaactctgcacccatttttaatagggttatttggttct
ctggagtctaacttcttgaattctttgcatatattggatattagccttct
atcggatgaagtattggtaaagatcttttcccaatctgctggttgccgtt
ttgtcctattgacagtgttgtttgccatacagaagctttgcaattttatg
aggtcccatttgtcaattcttggtcttagagcataagctattggtgttct
tctgttcaggaaaatttcccctgtgcccatgtgcttagggctcttcccca
ctttgttttctcttagtttcaatgtatctggttttatgtggaggtccttg
atccacttggacttgagctttttacaaggagataagaatgagtcaatttg
cattcttctacatgctaacagacagacagttgaaccagcaccatttgttg
aaaatgctgtttttattccactggatggttttggctcctttgtcaaagat
caagtgaatatatgtatgtgggttcatttctgggtcttcaattctattcc
attgatctacctgcctgtctctgtaccaataccaggccttttttgtttgt
ttgtttgtttgtttgtttttaatcacaattgctctgtagtacagcttgag
gtcagggatagtgattccaccagaagttcttttattgttgagaatagttt
ttgctatcctaggttttttgttaatccagatgaatttgtaaatttgtcct
tctatctctttgtagaattgagttggaattttgatgggaattgcattgaa
tctatacattgcttttgggcaagatggacatttttaccatattaatcctg
ccaatccatgaacatggaaagatttttccatcttctcagatctttttcga
tttctttcttcagagacttgaagttcttgtcatattgatctttcacttgc
ttagtagagtcacacaaggcatttttatattatttgagagtatttgaagg
tgttgtttccctaatttcttttctcagcctgttatccttgagtaagaaga
atgcactgattgcttgggctaatttgtaattcagcttactttggctgagt
gtttatcaggtcaggagctcctctgaggtctttaggtcctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28070159_28071319
seq2: B6Ng01-306K15.b_48_1193

seq1  GAATTCCCTGGATTCTATTTTTAAGCATCAGCTATCTAGTTTCTGGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGATTCTATTTTTAAGCATCAGCTATCTAGTTTCTGGGCTC  50

seq1  TATGACGCCATCTTATCTCCTGAGTCCCCTAACTCTGACCTTAGTAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACGCCATCTTATCTCCTGAGTCCCCTAACTCTGACCTTAGTAATCT  100

seq1  TGTGAGTTTCCTTGCATCTGGTTTTAGGGAGATGTTCTACAATTCCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTTCCTTGCATCTGGTTTTAGGGAGATGTTCTACAATTCCTGTC  150

seq1  AATCAGGAATCAGACTTTCTGCTATGCTGTCCCTTTTCATCTTTTAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGAATCAGACTTTCTGCTATGCTGTCCCTTTTCATCTTTTAATTG  200

seq1  ATAAAAGGTATATCAAGCCAATAATCTAGGCATTGTGGAATTTCCCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGTATATCAAGCCAATAATCTAGGCATTGTGGAATTTCCCCCTG  250

seq1  CTAGACCTTTTCAATGAGAAACATACACACAGACACATGCACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCTTTTCAATGAGAAACATACACACAGACACATGCACACACACAC  300

seq1  ATATTTTAAATCCAAAAATGTTTCATAATTCATATTGACTTTTCAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAATCCAAAAATGTTTCATAATTCATATTGACTTTTCAAATTC  350

seq1  AAGTCTAAAGACTTTTCACTTAATGTTTTCTTTGCTGCATCTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAAAGACTTTTCACTTAATGTTTTCTTTGCTGCATCTTTTTTTTT  400

seq1  TACTACCCATGGTTTTTGTATCTTTTTTTGTGTGTGTTCCTTTTGAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCCATGGTTTTTGTATCTTTTTTTGTGTGTGTTCCTTTTGAGACA  450

seq1  GGTTCCAGTGTAGCTCAGGGTTGCCTACCGCTTTATTATTTCACTACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGTGTAGCTCAGGGTTGCCTACCGCTTTATTATTTCACTACATA  500

seq1  GTTGAGAATGGTCTTGAGGTTTCTCAGAGCTAGGCTCAAGCCCCATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAATGGTCTTGAGGTTTCTCAGAGCTAGGCTCAAGCCCCATTCTT  550

seq1  TGGCATGTGGCTACAGTCAAACCTTCATAGCCTGGCTGCACTCCTGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGTGGCTACAGTCAAACCTTCATAGCCTGGCTGCACTCCTGCCAC  600

seq1  AGAGAAGGGATCATTGTGTTCTAGGAATCACTCAGTACCCATCTTACGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGATCATTGTGTTCTAGGAATCACTCAGTACCCATCTTACGTG  650

seq1  ACCATGAGAGAATCTGCAGGGTCTTCTGGGGTCTGTAGGGTAGAGCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGAGAATCTGCAGGGTCTTCTGGGGTCTGTAGGGTAGAGCAGTA  700

seq1  GTAACTGTTGAAGGATCCAGACATTGGAAGACCCCCAAATCACTCTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTTGAAGGATCCAGACATTGGAAGACCCCCAAATCACTCTGTGC  750

seq1  CTGTCAGTGTGGAGAAAGGTTGCGTTTCACCCTGAGAAAGGGACAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGTGTGGAGAAAGGTTGCGTTTCACCCTGAGAAAGGGACAGGCAG  800

seq1  CATGGCAGATAAGACAAGAGCCTTTTGTCATGAATTAAACCCACACTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGATAAGACAAGAGCCTTTTGTCATGAATTAAACCCACACTGTT  850

seq1  CTAGATAAACCTTTAGCTGAATGGCCATGGTAGTCCAGACCAAGCTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAAACCTTTAGCTGAATGGCCATGGTAGTCCAGACCAAGCTTCTG  900

seq1  TCCCCAAAACATGACATCATCAAGCTGGTGGATGAACTGGTTGGGCAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAACATGACATCATCAAGCTGGTGGATGAACTGGTTGGGCAGTG  950

seq1  TCATCAAATACCTCCTAGATCAGGCCT-ATATGTTTGTTGGTTGTCTGTG  999
      ||||| ||||||||||||||||||||| ||||||||||||| ||||||| 
seq2  TCATC-AATACCTCCTAGATCAGGCCTAATATGTTTGTTGG-TGTCTGTT  998

seq1  TCCTGAACCTCCAGGAGAAAGCAAGTCCACAGTCATGTCACTGTTAGACT  1049
        ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCTGAACCTCCAGGAGAAAGCAAGTCCACAGTCATGTCACTG-TAGACT  1047

seq1  TCTCTGTTCCCTGGAGGTTTCAGAGGAAAACCAAAGAATTTACAATTCCC  1099
      |||||||| |||||||||| |||| ||||  | ||||  |||| ||||| 
seq2  TCTCTGTT-CCTGGAGGTTCCAGAAGAAA--CCAAGA--TTAC-ATTCCA  1091

seq1  AGGCTCTAACTGATGAAATGGAAGGGAGAGGATATCCTGCCTGGATTGAT  1149
      ||||||| ||||||| ||||||||||| |||| |||||||   |||||||
seq2  AGGCTCT-ACTGATG-AATGGAAGGGAAAGGA-ATCCTGC--TGATTGAT  1136

seq1  TTCTTAGACACA  1161
      ||||  ||||||
seq2  TTCT--GACACA  1146