BAC Information

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BAC

Clone NameB6Ng01-307C20
Chromosome10 (Build37)
Map Location 88,543,744 - 88,681,247
singlet/doubletdoublet
Overlap geneTmem16d
Upstream genePmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039, LOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307C20.bB6Ng01-307C20.g
ACCGA100014GA100015
length1,0021,135
definitionB6Ng01-307C20.b B6Ng01-307C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,543,744 - 88,544,744)(88,680,130 - 88,681,247)
sequence
gaattccaggtcagcctgattagagagtgaaattcttaaccaaaaaagat
acaagaaaaacatggctcttgcctagcatcaccagcatcatttaatattt
aagaaaaatgtaattcatcaactgcatctagacttgttgaatcagaaatc
ctgaggatggacccagccatctgcatttttaacagctgttgaataatcct
gaggcataatggagaacaccattccacagagactgctactatggtcatta
ttaatgaattataaatgtgctaaatagattctcttttaccactgcccatg
agaaactgaagaatgtacacctctatagaaacttgtctctagtcttgttg
aaatcacctgccctccattctccttctgtttccagagtgttacatccatc
ctcttctgtcttttctcatccccataatgcatattttaaaaagaaattgc
cactggatcttttctcttgactctttacatctttctcacgaaatcccata
cattctcctggccagtgttgtggcctctatgcgcctgacatcctgttgga
ttatctaactttactttctatttggatggcttcaccatcagtcagttcca
gtggccttcaggacaccaaatgcccttgaaatctactgaaccataatgca
gaattattgaaggaaaccatcatcttcctcatcacacataggtacctggt
ggttctccactcttttatgtatttttcctacttgtaagtagggaaacttc
cttctcaactcttaattttcaaacacctgtgaaatgctaacctgttaccc
taaaatttcaacattttagctactttggtttttttcatgtataaatttag
tttttggtctatttaggaggcagaactatgattaaaaatgaaaggctaaa
gagaaaaggagaaaatggaaagaaggaaggagagagggagaaagtgaaat
agtggagagcgagagagagagagagaaagagagagagagagagagaggaa
gg
gaattctcccagatccatgtatcatgttcccaggatgcttatttggccct
ccatttctgggacctcagaagccctctctgatcctaacttactctttgtt
caatggaagaaaactttttatgaaacccatgactaaaactgcctttgaca
aatgatggacagggagagatgctggagtcagtcacaaagaatcaaacctg
ggtaaattctttgaaatgcctatttgagaaaccagcagtgcatggcaatg
tgtcttcttatgtaacccacagccccgtccatgtggaagttgtgtcaggt
gccaatttccacttgccagtttctcagaagcttaggtaaccattgctgtg
tgcagctaatgctgtgaatggatatttgagctcagtgacacaggctaatt
gttttatttctctgctctgcttcttgcttagatgtttgtttgacctcagc
tggccatccacctgagtcaaaactgctcaccttttgagatgtgctaagac
agttacatcccagcacaacaaaaatgaatttctggggccattttgagcta
ccctttcttaaagattccatcttaaatgcaacgtagcccaagggaccatg
tcagctactgctatcttccatacccatctcactcacctctgatacagaag
tcttcattagctagcacttgcaacacaagcaaagtgattatttagacact
tgtataaacaattcacttttagactttctagcagactgcctatcatggat
acctctaatcaagtaacaacaacaacaaaaaattcttaagattgaaactt
actttctttttcaaaaagtatgtctctgtgtggggtgaaattcacatagg
taaggtatgtggatgtgcccacttgcatacacatatgtgcagatcagagg
agggtaccaaagtgtgcgtgtgtgtttatggtggatgcacatttttaaag
tgtgcacaacctgtgtaagcatgttgaaggttcagatgggatgctaagta
tctttcttttgttcactgttctgcttagttttgtggagacagtgttctgt
taacttggagtcgggagctctaacagaaatctggcctatatcaattcgtc
aaatgtgtaagggttaccaggcttacctagcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88543744_88544744
seq2: B6Ng01-307C20.b_47_1047

seq1  GAATTCCAGGTCAGCCTGATTAGAGAGTGAAATTCTTAACCAAAAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGCCTGATTAGAGAGTGAAATTCTTAACCAAAAAAGAT  50

seq1  ACAAGAAAAACATGGCTCTTGCCTAGCATCACCAGCATCATTTAATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAACATGGCTCTTGCCTAGCATCACCAGCATCATTTAATATTT  100

seq1  AAGAAAAATGTAATTCATCAACTGCATCTAGACTTGTTGAATCAGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATGTAATTCATCAACTGCATCTAGACTTGTTGAATCAGAAATC  150

seq1  CTGAGGATGGACCCAGCCATCTGCATTTTTAACAGCTGTTGAATAATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATGGACCCAGCCATCTGCATTTTTAACAGCTGTTGAATAATCCT  200

seq1  GAGGCATAATGGAGAACACCATTCCACAGAGACTGCTACTATGGTCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATAATGGAGAACACCATTCCACAGAGACTGCTACTATGGTCATTA  250

seq1  TTAATGAATTATAAATGTGCTAAATAGATTCTCTTTTACCACTGCCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAATTATAAATGTGCTAAATAGATTCTCTTTTACCACTGCCCATG  300

seq1  AGAAACTGAAGAATGTACACCTCTATAGAAACTTGTCTCTAGTCTTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGAAGAATGTACACCTCTATAGAAACTTGTCTCTAGTCTTGTTG  350

seq1  AAATCACCTGCCCTCCATTCTCCTTCTGTTTCCAGAGTGTTACATCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCTGCCCTCCATTCTCCTTCTGTTTCCAGAGTGTTACATCCATC  400

seq1  CTCTTCTGTCTTTTCTCATCCCCATAATGCATATTTTAAAAAGAAATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTCTTTTCTCATCCCCATAATGCATATTTTAAAAAGAAATTGC  450

seq1  CACTGGATCTTTTCTCTTGACTCTTTACATCTTTCTCACGAAATCCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATCTTTTCTCTTGACTCTTTACATCTTTCTCACGAAATCCCATA  500

seq1  CATTCTCCTGGCCAGTGTTGTGGCCTCTATGCGCCTGACATCCTGTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCTGGCCAGTGTTGTGGCCTCTATGCGCCTGACATCCTGTTGGA  550

seq1  TTATCTAACTTTACTTTCTATTTGGATGGCTTCACCATCAGTCAGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAACTTTACTTTCTATTTGGATGGCTTCACCATCAGTCAGTTCCA  600

seq1  GTGGCCTTCAGGACACCAAATGCCCTTGAAATCTACTGAACCATAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTCAGGACACCAAATGCCCTTGAAATCTACTGAACCATAATGCA  650

seq1  GAATTATTGAAGGAAACCATCATCTTCCTCATCACACATAGGTACCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTGAAGGAAACCATCATCTTCCTCATCACACATAGGTACCTGGT  700

seq1  GGTTCTCCACTCTTTTATGTATTTTTCCTACTTGTAAGTAGGGAAACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCCACTCTTTTATGTATTTTTCCTACTTGTAAGTAGGGAAACTTC  750

seq1  CTTCTCAACTCTTAATTTTCAAACACCTGTGAAATGCTAACCTGTTACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAACTCTTAATTTTCAAACACCTGTGAAATGCTAACCTGTTACCC  800

seq1  TAAAATTTCAACATTTTAGCTACTTTGGTTTTTTTCATGTATAAATTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTCAACATTTTAGCTACTTTGGTTTTTTTCATGTATAAATTTAG  850

seq1  TTTTTGGTCTATTTAGGAGGCAGAACTATGATTAAAAATG-AAGGCTAAA  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTTGGTCTATTTAGGAGGCAGAACTATGATTAAAAATGAAAGGCTAAA  900

seq1  GAGAAAAGGAGAAAATGGAAAGAAGGAAGGAGAGAGGGAGAAAGTGAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGGAGAAAATGGAAAGAAGGAAGGAGAGAGGGAGAAAGTGAAAT  950

seq1  AGTGGGAGAGCGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGGA  999
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGT-GGAGAGCGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGGA  999

seq1  AG  1001
      ||
seq2  AG  1001

seq1: chr10_88680130_88681247
seq2: B6Ng01-307C20.g_64_1198 (reverse)

seq1  CTGTGCCTGTGTAAGCCT-GTAACC--TACACA-TTGGCGAATGGATATA  46
      ||||| ||  |||||||| ||||||  |||||| ||| ||||| ||||||
seq2  CTGTG-CTAGGTAAGCCTGGTAACCCTTACACATTTGACGAATTGATATA  49

seq1  GG-CAGA-TCCTGT--GAGCTCCCGACTC--AG-TAACAG-ACACTGTCT  88
      || |||| | ||||  |||||||||||||  || |||||| |||||||||
seq2  GGCCAGATTTCTGTTAGAGCTCCCGACTCCAAGTTAACAGAACACTGTCT  99

seq1  -CACAAAACTAAAGCAG-ACAGTGA--CAAAGAAAGATACTTAGCATCCC  134
       ||||||||| |||||| |||||||   ||||||||||||||||||| ||
seq2  CCACAAAACT-AAGCAGAACAGTGAACAAAAGAAAGATACTTAGCAT-CC  147

seq1  CTTCTGA--CCTCAACATGCTTACACAGG-TGTGCACACTTTAAAAATGT  181
      | |||||  | |||||||||||||||||| ||||||||||||||||||||
seq2  CATCTGAACCTTCAACATGCTTACACAGGTTGTGCACACTTTAAAAATGT  197

seq1  GCATCCACCATAAACACACACGCACACTTTGGTACCCTCCTCTGATCTGC  231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACCATAAACACACACGCACACTTTGGTACCCTCCTCTGATCTGC  247

seq1  ACATATGTGTATGCAAGTGGGCACATCCACATACCTTACCTATGTGAA-T  280
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACATATGTGTATGCAAGTGGGCACATCCACATACCTTACCTATGTGAATT  297

seq1  TCACCCCACACAGAGACATACTTTTTGAAAAAGAAAGTAAGTTTCAATCT  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCACACAGAGACATACTTTTTGAAAAAGAAAGTAAGTTTCAATCT  347

seq1  TAAGAATTTTTTGTTGTTGTTGTTACTTGATTAGAGGTATCCATGATAGG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTTTTTGTTGTTGTTGTTACTTGATTAGAGGTATCCATGATAGG  397

seq1  CAGTCTGCTAGAAAGTCTAAAAGTGAATTGTTTATACAAGTGTCTAAATA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCTAGAAAGTCTAAAAGTGAATTGTTTATACAAGTGTCTAAATA  447

seq1  ATCACTTTGCTTGTGTTGCAAGTGCTAGCTAATGAAGACTTCTGTATCAG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTGCTTGTGTTGCAAGTGCTAGCTAATGAAGACTTCTGTATCAG  497

seq1  AGGTGAGTGAGATGGGTATGGAAGATAGCAGTAGCTGACATGGTCCCTTG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGTGAGATGGGTATGGAAGATAGCAGTAGCTGACATGGTCCCTTG  547

seq1  GGCTACGTTGCATTTAAGATGGAATCTTTAAGAAAGGGTAGCTCAAAATG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACGTTGCATTTAAGATGGAATCTTTAAGAAAGGGTAGCTCAAAATG  597

seq1  GCCCCAGAAATTCATTTTTGTTGTGCTGGGATGTAACTGTCTTAGCACAT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAAATTCATTTTTGTTGTGCTGGGATGTAACTGTCTTAGCACAT  647

seq1  CTCAAAAGGTGAGCAGTTTTGACTCAGGTGGATGGCCAGCTGAGGTCAAA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGGTGAGCAGTTTTGACTCAGGTGGATGGCCAGCTGAGGTCAAA  697

seq1  CAAACATCTAAGCAAGAAGCAGAGCAGAGAAATAAAACAATTAGCCTGTG  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCTAAGCAAGAAGCAGAGCAGAGAAATAAAACAATTAGCCTGTG  747

seq1  TCACTGAGCTCAAATATCCATTCACAGCATTAGCTGCACACAGCAATGGT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGCTCAAATATCCATTCACAGCATTAGCTGCACACAGCAATGGT  797

seq1  TACCTAAGCTTCTGAGAAACTGGCAAGTGGAAATTGGCACCTGACACAAC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAGCTTCTGAGAAACTGGCAAGTGGAAATTGGCACCTGACACAAC  847

seq1  TTCCACATGGACGGGGCTGTGGGTTACATAAGAAGACACATTGCCATGCA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATGGACGGGGCTGTGGGTTACATAAGAAGACACATTGCCATGCA  897

seq1  CTGCTGGTTTCTCAAATAGGCATTTCAAAGAATTTACCCAGGTTTGATTC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTTTCTCAAATAGGCATTTCAAAGAATTTACCCAGGTTTGATTC  947

seq1  TTTGTGACTGACTCCAGCATCTCTCCCTGTCCATCATTTGTCAAAGGCAG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTGACTCCAGCATCTCTCCCTGTCCATCATTTGTCAAAGGCAG  997

seq1  TTTTAGTCATGGGTTTCATAAAAAGTTTTCTTCCATTGAACAAAGAGTAA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCATGGGTTTCATAAAAAGTTTTCTTCCATTGAACAAAGAGTAA  1047

seq1  GTTAGGATCAGAGAGGGCTTCTGAGGTCCCAGAAATGGAGGGCCAAATAA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGATCAGAGAGGGCTTCTGAGGTCCCAGAAATGGAGGGCCAAATAA  1097

seq1  GCATCCTGGGAACATGATACATGGATCTGGGAGAATTC  1118
      ||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGGGAACATGATACATGGATCTGGGAGAATTC  1135