BAC Information

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BAC

Clone NameB6Ng01-307F11
Chromosome10 (Build37)
Map Location 50,358,952 - 50,493,449
singlet/doubletdoublet
Overlap geneAscc3
Upstream geneGrik2, LOC629652
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307F11.bB6Ng01-307F11.g
ACCGA100138GA100139
length1,1181,116
definitionB6Ng01-307F11.b B6Ng01-307F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,492,332 - 50,493,449)(50,358,952 - 50,360,074)
sequence
gaattcactgatatatatgctgtgctgttctcaaactttttaaaaaattg
aaattgctgtattttaatgtaagaaatctgttcttttactcaatattcta
aaatttgctgggcaaaaagatagtcacaaacttttaaaatagggtatctg
acatatatgcatatagtcccatgcttgaaataaacaaagattagttgtac
tccatctttgatatagaagcataatgtcatatttctatacagttacaaga
acacaaatagtgaaataattcttaaattaaaaaaaaaaaaaccctgaaaa
tctcaaagtccttaagtacatttagaatatattttgctttctcttggcta
ttaatacactaaggaagtacatagtaaagaatatgttgaaacagattcca
caactttgaaagcttccatttgcattgctgtttctaaataggttaacgtc
taaacacctagaaacacatcaaagctgaccctgctgggccatgacgatgg
acactttctgctctggagttgtgccagcatcattaagagattcttcaaat
tacttttgaaatgcacttttccctcaggattttcacttatacctaattag
actactaactacaatctatgtaatccctgttgccaaaactgctaaatgct
tcaataagtaggaggagggcatcaatggagcaggacagatgtaatgtcac
tggttaacaatagaggtgtgaagcagctgccttaattatgaagcttatta
attcatggtgttaaaaaagacttggcaagggttcttataaaatacccagt
cttttcaaaatagcatcagatggtttaaaacttcaaatatgttttcaaca
aggagttctgaaataattatttttaccagcgattaacatttgtattcaat
acttacaatctaagttacaagatcacacatgactttaaaattaactcttg
ttattttttaaaggtacatgaccttaacatcttaatatttaaattttttt
attggtagaaatgggctccacagataaagtaaagcgtgtctagaagagaa
agtagtattggggtagccttctaggactacgttgtatgggttagggagga
aactacctacctgtgaca
gaattctcctatgcttggaaaaactcagatcaaggctgaagacataaatg
tgaaatataactgtgaacgttcattttaaagttgattcagcttcctagag
tgaatcagtatatatttagttggtattgaagataataaacttaatttaaa
tgtcagaatttaaattattatgagtttcacatcaaaaccaatatttcaca
aatgtacttcttagacattatatggtgtaatattttaagcagtaaatagt
ttctcggtacccgtaaccaaataatagctagtttagaattagaggtggga
tttttattgctataagagagttacatttaaatttgtaggtgtttgatata
aagccaaactcacagttttgaaaatttattgttgcctttaatatttcttc
tagaagatagatagttggtatccataataaaagaaaaattctacagaatt
ctgcctcagtttagtctcatttgaaaaaaattgtttttactgtattaata
attggatgaattatcactctgaaatttagttttttttgcactaaattcag
ttcaggctttataaagaactccagaagttttaactgcagactgttttttt
ttttttttttttaaactgccactgcttctaaaagaaagagactttatcag
cagaaatttctctgtatcttaaaggaagttaaggagccactgctgtaatt
taagaacactaaggtggtgttcacattctccatgctggcctacactgttg
aattggaggcagcttcttggtgcactatgcagcctcagtgcataagtagt
ggatctaaccattttgtcgtgtagtgaaaaaaatgcctactaaaaaaata
aaccagggagccagtgtgtttatattgttaaactttgtaaaccgtgtttc
attgataaacgtttcagttctctcagaagtgatagctttggaaatgttgt
attttgaatgcacagaaagtaaacaactaccaattgtgtttgaataaaga
aataatacttcaataaaatatgaatgtaaaaagaaaaaagaattgttaga
aacctgacaatttgaatcagcactgacttttatgggctctgatccttcga
atagaaggcagctcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_50492332_50493449
seq2: B6Ng01-307F11.b_45_1162 (reverse)

seq1  TGTCACA-GTAGTAAGTTTCCT-CCTAACCCATACAACGTAGTTCCTTAG  48
      ||||||| ||||  |||||||| ||||||||||||||||||||  | |||
seq2  TGTCACAGGTAGGTAGTTTCCTCCCTAACCCATACAACGTAGT--CCTAG  48

seq1  A--GCTACCCCAATACCTACCTTTCTCTTCTAGACACGCTTTACTTTATC  96
      |  |||||||||||| ||| ||||||||||||||||||||||||||||| 
seq2  AAGGCTACCCCAATA-CTA-CTTTCTCTTCTAGACACGCTTTACTTTAT-  95

seq1  CTGT-GAG-CCATTTCTACCAATAAAAAATTTTAAATATTAAGATGTTAA  144
      |||| ||| |||||||||||||||||||| ||||||||||||||||||||
seq2  CTGTGGAGCCCATTTCTACCAATAAAAAAATTTAAATATTAAGATGTTAA  145

seq1  GGTCATGTACCTTTAAAAAATAAACAAGAGTTAATTTTAAAGTCATGTGT  194
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGTCATGTACCTTTAAAAAAT-AACAAGAGTTAATTTTAAAGTCATGTGT  194

seq1  GATCTTGTAACTTAGATTGTAAGTATTGAATACAAATGTTAATCGCTGGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGTAACTTAGATTGTAAGTATTGAATACAAATGTTAATCGCTGGT  244

seq1  AAAAATAATTATTTCAGAACTCCTTGTTGAAAACATATTTGAAGTTTTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATTATTTCAGAACTCCTTGTTGAAAACATATTTGAAGTTTTAA  294

seq1  ACCATCTGATGCTATTTTGAAAAGACTGGGTATTTTATAAGAACCCTTGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGATGCTATTTTGAAAAGACTGGGTATTTTATAAGAACCCTTGC  344

seq1  CAAGTCTTTTTTAACACCATGAATTAATAAGCTTCATAATTAAGGCAGCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTTTTTAACACCATGAATTAATAAGCTTCATAATTAAGGCAGCT  394

seq1  GCTTCACACCTCTATTGTTAACCAGTGACATTACATCTGTCCTGCTCCAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACACCTCTATTGTTAACCAGTGACATTACATCTGTCCTGCTCCAT  444

seq1  TGATGCCCTCCTCCTACTTATTGAAGCATTTAGCAGTTTTGGCAACAGGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCTCCTCCTACTTATTGAAGCATTTAGCAGTTTTGGCAACAGGG  494

seq1  ATTACATAGATTGTAGTTAGTAGTCTAATTAGGTATAAGTGAAAATCCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATAGATTGTAGTTAGTAGTCTAATTAGGTATAAGTGAAAATCCTG  544

seq1  AGGGAAAAGTGCATTTCAAAAGTAATTTGAAGAATCTCTTAATGATGCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAGTGCATTTCAAAAGTAATTTGAAGAATCTCTTAATGATGCTG  594

seq1  GCACAACTCCAGAGCAGAAAGTGTCCATCGTCATGGCCCAGCAGGGTCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAACTCCAGAGCAGAAAGTGTCCATCGTCATGGCCCAGCAGGGTCAG  644

seq1  CTTTGATGTGTTTCTAGGTGTTTAGACGTTAACCTATTTAGAAACAGCAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGTGTTTCTAGGTGTTTAGACGTTAACCTATTTAGAAACAGCAA  694

seq1  TGCAAATGGAAGCTTTCAAAGTTGTGGAATCTGTTTCAACATATTCTTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGGAAGCTTTCAAAGTTGTGGAATCTGTTTCAACATATTCTTTA  744

seq1  CTATGTACTTCCTTAGTGTATTAATAGCCAAGAGAAAGCAAAATATATTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTACTTCCTTAGTGTATTAATAGCCAAGAGAAAGCAAAATATATTC  794

seq1  TAAATGTACTTAAGGACTTTGAGATTTTCAGGGTTTTTTTTTTTTTAATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTACTTAAGGACTTTGAGATTTTCAGGGTTTTTTTTTTTTTAATT  844

seq1  TAAGAATTATTTCACTATTTGTGTTCTTGTAACTGTATAGAAATATGACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTATTTCACTATTTGTGTTCTTGTAACTGTATAGAAATATGACA  894

seq1  TTATGCTTCTATATCAAAGATGGAGTACAACTAATCTTTGTTTATTTCAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTCTATATCAAAGATGGAGTACAACTAATCTTTGTTTATTTCAA  944

seq1  GCATGGGACTATATGCATATATGTCAGATACCCTATTTTAAAAGTTTGTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGACTATATGCATATATGTCAGATACCCTATTTTAAAAGTTTGTG  994

seq1  ACTATCTTTTTGCCCAGCAAATTTTAGAATATTGAGTAAAAGAACAGATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTTTTGCCCAGCAAATTTTAGAATATTGAGTAAAAGAACAGATT  1044

seq1  TCTTACATTAAAATACAGCAATTTCAATTTTTTAAAAAGTTTGAGAACAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATTAAAATACAGCAATTTCAATTTTTTAAAAAGTTTGAGAACAG  1094

seq1  CACAGCATATATATCAGTGAATTC  1118
      ||||||||||||||||||||||||
seq2  CACAGCATATATATCAGTGAATTC  1118

seq1: chr10_50358952_50360074
seq2: B6Ng01-307F11.g_68_1183

seq1  GAATTCTCCTATGCTTGGAAAAACTCAGATCAAGGCTGAAGACATAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTATGCTTGGAAAAACTCAGATCAAGGCTGAAGACATAAATG  50

seq1  TGAAATATAACTGTGAACGTTCATTTTAAAGTTGATTCAGCTTCCTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATAACTGTGAACGTTCATTTTAAAGTTGATTCAGCTTCCTAGAG  100

seq1  TGAATCAGTATATATTTAGTTGGTATTGAAGATAATAAACTTAATTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGTATATATTTAGTTGGTATTGAAGATAATAAACTTAATTTAAA  150

seq1  TGTCAGAATTTAAATTATTATGAGTTTCACATCAAAACCAATATTTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAATTTAAATTATTATGAGTTTCACATCAAAACCAATATTTCACA  200

seq1  AATGTACTTCTTAGACATTATATGGTGTAATATTTTAAGCAGTAAATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACTTCTTAGACATTATATGGTGTAATATTTTAAGCAGTAAATAGT  250

seq1  TTCTCGGTACCCGTAACCAAATAATAGCTAGTTTAGAATTAGAGGTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGGTACCCGTAACCAAATAATAGCTAGTTTAGAATTAGAGGTGGGA  300

seq1  TTTTTATTGCTATAAGAGAGTTACATTTAAATTTGTAGGTGTTTGATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTGCTATAAGAGAGTTACATTTAAATTTGTAGGTGTTTGATATA  350

seq1  AAGCCAAACTCACAGTTTTGAAAATTTATTGTTGCCTTTAATATTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAACTCACAGTTTTGAAAATTTATTGTTGCCTTTAATATTTCTTC  400

seq1  TAGAAGATAGATAGTTGGTATCCATAATAAAAGAAAAATTCTACAGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATAGATAGTTGGTATCCATAATAAAAGAAAAATTCTACAGAATT  450

seq1  CTGCCTCAGTTTAGTCTCATTTGAAAAAAATTGTTTTTACTGTATTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAGTTTAGTCTCATTTGAAAAAAATTGTTTTTACTGTATTAATA  500

seq1  ATTGGATGAATTATCACTCTGAAATTTAGTTTTTTTTGCACTAAATTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGAATTATCACTCTGAAATTTAGTTTTTTTTGCACTAAATTCAG  550

seq1  TTCAGGCTTTATAAAGAACTCCAGAAGTTTTAACTGCAGACTGTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTTTATAAAGAACTCCAGAAGTTTTAACTGCAGACTGTTTTTTT  600

seq1  TTTTTTTTTTTTAAACTGCCACTGCTTCTAAAAGAAAGAGACTTTATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAAACTGCCACTGCTTCTAAAAGAAAGAGACTTTATCAG  650

seq1  CAGAAATTTCTCTGTATCTTAAAGGAAGTTAAGGAGCCACTGCTGTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTTCTCTGTATCTTAAAGGAAGTTAAGGAGCCACTGCTGTAATT  700

seq1  TAAGAACACTAAGGTGGTGTTCACATTCTCCATGCTGGCCTACACTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACACTAAGGTGGTGTTCACATTCTCCATGCTGGCCTACACTGTTG  750

seq1  AATTGGAGGCAGCTTCTTGGTGCACTATGCAGCCTCAGTGCATAAGTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAGGCAGCTTCTTGGTGCACTATGCAGCCTCAGTGCATAAGTAGT  800

seq1  GGATCTAACCATTTTGTCGTGTAGTG-AATAAATGCCTACT-AAAAAATA  848
      |||||||||||||||||||||||||| || ||||||||||| ||||||||
seq2  GGATCTAACCATTTTGTCGTGTAGTGAAAAAAATGCCTACTAAAAAAATA  850

seq1  AACCAGGGAGCCAGTGTGTTTATATTGTTAAAC-TTGTAAACCGTGTTTC  897
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACCAGGGAGCCAGTGTGTTTATATTGTTAAACTTTGTAAACCGTGTTTC  900

seq1  ATTGAT-AACGTTTCAGTTCTCTCAGAAGGTTGATAGCTTTGGAAATG-T  945
      |||||| ||||||||||||||||||||||  ||||||||||||||||| |
seq2  ATTGATAAACGTTTCAGTTCTCTCAGAAG--TGATAGCTTTGGAAATGTT  948

seq1  GTATTTTGAATGCACAGAAGTTAACCAACTACC-ATTGTGTTTGGAATTA  994
      |||||||||||||||||||  ||| |||||||| ||||||||||  | ||
seq2  GTATTTTGAATGCACAGAAAGTAAACAACTACCAATTGTGTTTG--AATA  996

seq1  AAGAA--TATACCTTTCAATAAAATTATTGAAATGTTAAAAGAAAA---G  1039
      |||||   ||||  |||||||||| |||   ||||| |||||||||    
seq2  AAGAAATAATAC--TTCAATAAAA-TAT--GAATGTAAAAAGAAAAAAGA  1041

seq1  ATTGTTAGAAACTTGGACATTTGGAATTTAGCACTTTGACCTTTTTTATG  1089
      |||||||||||| | |||| || ||| | |||||  ||||   |||||| 
seq2  ATTGTTAGAAACCT-GACAATTTGAA-TCAGCAC--TGAC---TTTTAT-  1083

seq1  GGGCTCTGAGCTCTTCAGATAGAGAGCAGCTCGT  1123
      ||||||||| | ||||  |||||  |||||||||
seq2  GGGCTCTGATC-CTTCGAATAGAAGGCAGCTCGT  1116