BAC Information

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BAC

Clone NameB6Ng01-309G17
Chromosome10 (Build37)
Map Location 45,446,681 - 45,613,573
singlet/doubletdoublet
Overlap geneLOC664781
Upstream gene4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309G17.bB6Ng01-309G17.g
ACCGA101665GA101666
length1,1191,120
definitionB6Ng01-309G17.b B6Ng01-309G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,612,457 - 45,613,573)(45,446,681 - 45,447,814)
sequence
gaattcccagagtaacggacttgaagactacaactctttaaaagtcattg
ataatagattaagtgaaagaagtctattctctcttgaaacatcacttaca
ttcacacacccaaagcaattgttgactttaccagtgtcatttgcaaagtt
gttatcataatatattctcatttacaataaaaattactcctacaaatttt
atgttctacccgtagctactgatagttctaccctctacattttcaaagag
aaaagttctagaaacttcactactgtccttgaaatgtaaaaatccacaca
ttatcacacacacacacacacacaaatatctcaacagaagtcattcatgc
gtgcctgagagtagacacaaccacatcaggttatagactacaggggcaaa
tgacttaacaaaacttcagatgaagccaagggaattacagcaatttctat
catcagctccatacaaaacctttttagtaacagccacaaagccaccaata
gatatgccctaagaagttagagaatagtacctgttttctttctcttccag
atataattggtttttatgagaacaacgtgcatcctgtagaaacatttaga
tttctgaactcttataggctctttggtccttcatgttgcaccaaagacta
tgtgtctctttaatgaaatcacgaaatggtgagggagccaaaaatacatt
ttgtaattaagctcggcgacaatcaactatatgaagacaagcaatagtgg
ttttctttctcctgaaatttccatttcatctgacagttctgtttctacat
ctcattccttctcctttttcttccaccataataataaaagtatcaagaat
ttctaatatataaagaaaattgaaaggctcattcatgtgccagaaaacct
gtttctaatcatgggggttgtcatgtctttagttttattttttttttctt
gaactatttttattacttaagaatgtaagaaagaataccttcaaagaaag
acagacctatgtaagcatttttgttattgtattgactcaattatgtgcct
ccacacagcttcaagaaaataatgcccctttgtattgttctatcttgcag
cccagagtcaaggcaggga

gaattctaccttcttgtactgaagcaggagaagactagcttccaggcagc
taggaacaaggtcttaaagcccaaacccacagtgacacacctacttcaag
gtgacacctccaaatggtgccactttctgggccaaacatactcaaaccac
tacaaacacacagagactgaaggagcaagcacaagtcctgccaggtctgc
tacagttgctctgcatctatactataactttcagtttagtctttttatgg
gactcctgaatatgtgaatgagtgggtctctgatgcttgtgtctgctctt
ggggcttttttccttctgttgatttgcctcgtccaacttcaatataatgg
cttttgttttatctattatattttattttgttatacttaaagaaatgaat
ggaagaatgaatgaatgaatgaatgaagaactagacattagaataacgtt
taacaaattaacggtcaattattcctgctgggagaagttttcctcagtga
catgacactgggtatgtcaaccaatccagggcaggcctcatattcaggag
tagtggaccaacaaattatgaactccagttattttttaatgtgtgtacag
tttggtgtttttgtttttcttttcagatgttttattatattttcttggtt
agtgcatggaggtttgttgatgcattggggttctgtttgtttttgagaaa
gaagttaaaattgaatggttcagaagggggcaggatctgaaagaacttga
gagaggggaagaatatgatcaaaatatatttttatttaaaatttgtgttg
agtaagtttttttttttaaaaaaagagcagaataacaaatagggcatggc
ttactttggaccagtcttctccaaatcgctagacaaatgagagaaaagtt
cctaatatctctatgcagaataaagtataacacttggaaaagaaagtaaa
gtaaaaaacaaaaaacaaaaacactctttttgttgtttgttgtttgtttt
tctgtgggcgtgtctgagctgctatgtattcaactctaaatagcatccca
agatctggttgcagtccaatggaacctttctcatgttacacccaaatgat
gtgttaaacttgctcatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_45612457_45613573
seq2: B6Ng01-309G17.b_45_1163 (reverse)

seq1  TCCCTGCCTTGGCTTCTTTGGCTGCAAGAT-GACCATAACAAAGGGGCCT  49
      ||||||||||| ||   | ||||||||||| || ||  |||||||||| |
seq2  TCCCTGCCTTGACT--CTGGGCTGCAAGATAGAACAATACAAAGGGGCAT  48

seq1  T-TATTC-TGAAGCTGT-TGTGAGCACAT-ATTGAGTCAATACA--TACA  93
      | | ||| ||||||||| ||   |||||| ||||||||||||||   |||
seq2  TATTTTCTTGAAGCTGTGTGGAGGCACATAATTGAGTCAATACAATAACA  98

seq1  AAAATGCTTACAATAGGTCTGTCTTTCTTTTGAGGTATCTTTCCTTAACA  143
      ||||||||||| ||||||||||||||||||  ||||||  || ||| |||
seq2  AAAATGCTTAC-ATAGGTCTGTCTTTCTTTGAAGGTATTCTTTCTT-ACA  146

seq1  TTTCTTAAGTAAT-AAAATAGTTCAAGAAAAAAAAATAAAACCTAAAGAC  192
       |||||||||||| ||||||||||||||||||||||  ||| ||||||| 
seq2  -TTCTTAAGTAATAAAAATAGTTCAAGAAAAAAAAAATAAAACTAAAGA-  194

seq1  CATGACAACCCCCATGATTAGAAACAGGTTTTCTGGCACATGAATGAGCC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAACCCCCATGATTAGAAACAGGTTTTCTGGCACATGAATGAGCC  244

seq1  TTTCAATTTTCTTTATATATTAGAAATTCTTGATACTTTTATTATTATGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTTCTTTATATATTAGAAATTCTTGATACTTTTATTATTATGG  294

seq1  TGGAAGAAAAAGGAGAAGGAATGAGATGTAGAAACAGAACTGTCAGATGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAAAAGGAGAAGGAATGAGATGTAGAAACAGAACTGTCAGATGA  344

seq1  AATGGAAATTTCAGGAGAAAGAAAACCACTATTGCTTGTCTTCATATAGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAATTTCAGGAGAAAGAAAACCACTATTGCTTGTCTTCATATAGT  394

seq1  TGATTGTCGCCGAGCTTAATTACAAAATGTATTTTTGGCTCCCTCACCAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTCGCCGAGCTTAATTACAAAATGTATTTTTGGCTCCCTCACCAT  444

seq1  TTCGTGATTTCATTAAAGAGACACATAGTCTTTGGTGCAACATGAAGGAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGATTTCATTAAAGAGACACATAGTCTTTGGTGCAACATGAAGGAC  494

seq1  CAAAGAGCCTATAAGAGTTCAGAAATCTAAATGTTTCTACAGGATGCACG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCCTATAAGAGTTCAGAAATCTAAATGTTTCTACAGGATGCACG  544

seq1  TTGTTCTCATAAAAACCAATTATATCTGGAAGAGAAAGAAAACAGGTACT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCATAAAAACCAATTATATCTGGAAGAGAAAGAAAACAGGTACT  594

seq1  ATTCTCTAACTTCTTAGGGCATATCTATTGGTGGCTTTGTGGCTGTTACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAACTTCTTAGGGCATATCTATTGGTGGCTTTGTGGCTGTTACT  644

seq1  AAAAAGGTTTTGTATGGAGCTGATGATAGAAATTGCTGTAATTCCCTTGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTTTTGTATGGAGCTGATGATAGAAATTGCTGTAATTCCCTTGG  694

seq1  CTTCATCTGAAGTTTTGTTAAGTCATTTGCCCCTGTAGTCTATAACCTGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTGAAGTTTTGTTAAGTCATTTGCCCCTGTAGTCTATAACCTGA  744

seq1  TGTGGTTGTGTCTACTCTCAGGCACGCATGAATGACTTCTGTTGAGATAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGTGTCTACTCTCAGGCACGCATGAATGACTTCTGTTGAGATAT  794

seq1  TTGTGTGTGTGTGTGTGTGTGATAATGTGTGGATTTTTACATTTCAAGGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGTGTGTGTGTGATAATGTGTGGATTTTTACATTTCAAGGA  844

seq1  CAGTAGTGAAGTTTCTAGAACTTTTCTCTTTGAAAATGTAGAGGGTAGAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGAAGTTTCTAGAACTTTTCTCTTTGAAAATGTAGAGGGTAGAA  894

seq1  CTATCAGTAGCTACGGGTAGAACATAAAATTTGTAGGAGTAATTTTTATT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTAGCTACGGGTAGAACATAAAATTTGTAGGAGTAATTTTTATT  944

seq1  GTAAATGAGAATATATTATGATAACAACTTTGCAAATGACACTGGTAAAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGAGAATATATTATGATAACAACTTTGCAAATGACACTGGTAAAG  994

seq1  TCAACAATTGCTTTGGGTGTGTGAATGTAAGTGATGTTTCAAGAGAGAAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATTGCTTTGGGTGTGTGAATGTAAGTGATGTTTCAAGAGAGAAT  1044

seq1  AGACTTCTTTCACTTAATCTATTATCAATGACTTTTAAAGAGTTGTAGTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTTTCACTTAATCTATTATCAATGACTTTTAAAGAGTTGTAGTC  1094

seq1  TTCAAGTCCGTTACTCTGGGAATTC  1117
      |||||||||||||||||||||||||
seq2  TTCAAGTCCGTTACTCTGGGAATTC  1119


seq1: chr10_45446681_45447814
seq2: B6Ng01-309G17.g_66_1185

seq1  GAATTCTACCTTCTTGTACTGAAGCAGGAGAAGACTAGCTTCCAGGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTTCTTGTACTGAAGCAGGAGAAGACTAGCTTCCAGGCAGC  50

seq1  TAGGAACAAGGTCTTAAAGCCCAAACCCACAGTGACACACCTACTTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACAAGGTCTTAAAGCCCAAACCCACAGTGACACACCTACTTCAAG  100

seq1  GTGACACCTCCAAATGGTGCCACTTTCTGGGCCAAACATACTCAAACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACCTCCAAATGGTGCCACTTTCTGGGCCAAACATACTCAAACCAC  150

seq1  TACAAACACACAGAGACTGAAGGAGCAAGCACAAGTCCTGCCAGGTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACACAGAGACTGAAGGAGCAAGCACAAGTCCTGCCAGGTCTGC  200

seq1  TACAGTTGCTCTGCATCTATACTATAACTTTCAGTTTAGTCTTTTTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGCTCTGCATCTATACTATAACTTTCAGTTTAGTCTTTTTATGG  250

seq1  GACTCCTGAATATGTGAATGAGTGGGTCTCTGATGCTTGTGTCTGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGAATATGTGAATGAGTGGGTCTCTGATGCTTGTGTCTGCTCTT  300

seq1  GGGGCTTTTTTCCTTCTGTTGATTTGCCTCGTCCAACTTCAATATAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTTTTCCTTCTGTTGATTTGCCTCGTCCAACTTCAATATAATGG  350

seq1  CTTTTGTTTTATCTATTATATTTTATTTTGTTATACTTAAAGAAATGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTTATCTATTATATTTTATTTTGTTATACTTAAAGAAATGAAT  400

seq1  GGAAGAATGAATGAATGAATGAATGAAGAACTAGACATTAGAATAACGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATGAATGAATGAATGAATGAAGAACTAGACATTAGAATAACGTT  450

seq1  TAACAAATTAACGGTCAATTATTCCTGCTGGGAGAAGTTTTCCTCAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATTAACGGTCAATTATTCCTGCTGGGAGAAGTTTTCCTCAGTGA  500

seq1  CATGACACTGGGTATGTCAACCAATCCAGGGCAGGCCTCATATTCAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACTGGGTATGTCAACCAATCCAGGGCAGGCCTCATATTCAGGAG  550

seq1  TAGTGGACCAACAAATTATGAACTCCAGTTATTTTTTAATGTGTGTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGACCAACAAATTATGAACTCCAGTTATTTTTTAATGTGTGTACAG  600

seq1  TTTGGTGTTTTTGTTTTTCTTTTCAGATGTTTTATTATATTTTCTTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTTTTTGTTTTTCTTTTCAGATGTTTTATTATATTTTCTTGGTT  650

seq1  AGTGCATGGAGGTTTGTTGATGCATTGGGGTTCTGTTTGTTTTTGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATGGAGGTTTGTTGATGCATTGGGGTTCTGTTTGTTTTTGAGAAA  700

seq1  GAAGTTAAAATTGAATGGTTCAGAAGGGGGCAGGATCTGAAAGAACTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAAAATTGAATGGTTCAGAAGGGGGCAGGATCTGAAAGAACTTGA  750

seq1  GAGAGGGGAAGAATATGATCAAAATATATTTTTATTTAAAATTTGTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGAAGAATATGATCAAAATATATTTTTATTTAAAATTTGTGTTG  800

seq1  AGTAA-TTTTTTTTTTTAAAAAAAGAGCAGAATAACAAATAGGGCATGGC  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTTTTTTTTTTAAAAAAAGAGCAGAATAACAAATAGGGCATGGC  850

seq1  TTACTTTGGACCAGTCTTCTCCAAATCGCTAGACAAATGAGAGAAAAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGGACCAGTCTTCTCCAAATCGCTAGACAAATGAGAGAAAAGTT  900

seq1  CCTAATATCTCTATGCAGAATAAAGTATAACACTTGGAAAAGAAAGTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATCTCTATGCAGAATAAAGTATAACACTTGGAAAAGAAAGTAAA  950

seq1  GTAAAAAACAAAAAACAAAAACAACCTCTTTTTTGTTTGTTTGTTTGTTT  999
      |||||||||||||||||||||||  ||||||||   ||||||| ||||||
seq2  GTAAAAAACAAAAAACAAAAACA--CTCTTTTT--GTTGTTTG-TTGTTT  995

seq1  GTTTTTCTTGTTGGGCGTTGTTCTGGAGCTGCTATGTATTCAAACTCTAA  1049
      ||||||||   |||||||   ||| |||||||||||||||| ||||||||
seq2  GTTTTTCT--GTGGGCGT--GTCT-GAGCTGCTATGTATTC-AACTCTAA  1039

seq1  ATAGCATTCCCCAAGATCTGGTTGCAGTCCAAATGGACACTTTCTCATG-  1098
      |||||||  ||||||||||||||||||||| ||||||  |||||||||| 
seq2  ATAGCAT--CCCAAGATCTGGTTGCAGTCC-AATGGAACCTTTCTCATGT  1086

seq1  TACA-CCAAATGATGTTGTATAAACTTTGCTCATTTT  1134
      |||| |||||||||| ||| ||||| |||||||||||
seq2  TACACCCAAATGATG-TGT-TAAAC-TTGCTCATTTT  1120


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