BAC Information

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BAC

Clone NameB6Ng01-309N12
Chromosome10 (Build37)
Map Location 99,404,461 - 99,405,577
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246
Downstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309N12.bB6Ng01-309N12.g
ACCGA101984GA101985
length1,101735
definitionB6Ng01-309N12.b B6Ng01-309N12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtaaccatgccttaacttatattatcccataagatccttttta
ttctgagaggttgctaagaacattagaagcatgacaatacttcaacacat
aagaagaggaaagtcaaactatcccgtggaataatattatataatagtga
atagaccagtgagatgactcagtatgtaacagagcttgtcagtaaccgcg
acagcccgagttcagtccctgtgacccaaatggcagaaagaaaagactgg
cccccaaaagcagcacagtccatgtcacatgtactctgagtaccatggaa
aggtccatcagccccttcttgttctttttctccatttcctggtaacgatg
aggcaagaagcctctgtcacctgcctcgcctcaagctcaatgcagcagat
tcagctagccccggatacagagtccagaaaccatgagacataataaattt
cccttctccacaatggaaaaaaaaatcagtgttgtgcttcagagggaata
gttaggtaatagtgactaaaaattatctgtaaaactctacggattaaaca
actgtcctgaattgttctattactccttagcacaaatccaaaagccctgt
gcaaaaattccacttattttttataccattgcttttaatcgcccaaggtt
gaacccccaaagaactaataaagtgcctaacatgtaaatgagcttgcaac
tttacatgggatatataagaaagccatcagcaacagccctcaaagcctag
tgttcagtctttatacaaacttctgctcgtagagtgtttgcagtcttaga
gactaaaggaatcattaagtaggtttgtaacaaatgagctttcttttgtg
acaaaaataaatgagttcgcttcctctccattcttcactgtgattccaca
gaaccgctctgagcttggctagatgtctgtctagctgagctccgaacaaa
gactagagggaaaagtgaaaacacggacaaccgagcagtgaaggcggtgg
acatgacatagcctgggagcaaaggatcatgctgcacccagccccagtcg
ttcagagaaaccgtgccacatgtcctgaaagatggaagtggagtctacat
g
gaattcacctccagtagaaaaacagggcatcaggtggagggatggggttg
ccgtgctacagtcaaaactctgatccagaattgttcctctctaaaagaac
tgcagggaaaaaaatggagaagagactgagggaaaggaggtccagtgact
ggcccgacttgaggtccatctgacaggaggctccaaggcctgacactatt
attgatgctatggtgtgcttacagacaggtacctagtatggctaccctct
gagaggcccaacaagcagctgactaggacagaagcagatacttacaagac
tcaaccagtgatctaaagttggggatacctgtggttgaattaaggaaagg
ctggacaaagttgaggaggagagtgaccccataggaagaccatcagtttc
aactaacctggacctccacgatctctcaaacactgagccaccaagccagg
caacagatactagctggtccaaggcccccaacacatatacagcagaagac
tgcctggtctggcttcaatgagacaagatgtacctaacccttgagagact
tgaggccccagggaatggggaggcctgacagggtgtgttttgatgtgtag
gaggtggaaacatcctcttggagtcatgggagtaggaatgggatgaggaa
ctgtcactgtcggagtgtggactgggaggggaatctcaagtgaactgtta
aaaaaaacgagtgaatgaatgaaaatgatgttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99404461_99405577
seq2: B6Ng01-309N12.b_48_1148 (reverse)

seq1  CATGTAAGACTCCCAACCCTCCATCCTTTCAGGACCATGTGGCCACCGGT  50
      ||||| |||||||    | ||||| ||||||||| ||||||||   ||||
seq2  CATGT-AGACTCC---ACTTCCAT-CTTTCAGGA-CATGTGGC--ACGGT  42

seq1  TTCTCTGAACGACTGGGGCTGGGTGCCAGCATGATCCTTTTGCTCCCAGG  100
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TTCTCTGAACGACTGGGGCTGGGTG-CAGCATGATCC-TTTGCTCCCAGG  90

seq1  CTAATGTCATTGTCCACCGCCTTCACTGCTTCGGTTGTTCCGTTGTTTCA  150
      || |||||| ||||||||||||||||||| ||||||| |||||  |||||
seq2  CT-ATGTCA-TGTCCACCGCCTTCACTGC-TCGGTTG-TCCGTGTTTTCA  136

seq1  CTTTTCCCCTCTTAGTCTTTGTTCGGAGCTCAGCTAGACAGACATCTAGC  200
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTTT-CCCTC-TAGTCTTTGTTCGGAGCTCAGCTAGACAGACATCTAGC  184

seq1  CAAGCTCAGAGCGGTTCTGTGGAATCACAGTGAAGAATGGAGAGGAAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCAGAGCGGTTCTGTGGAATCACAGTGAAGAATGGAGAGGAAGCG  234

seq1  AACTCATTTATTTTTGTCACAAAAGAAAGCTCATTTGTTACAAACCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTTATTTTTGTCACAAAAGAAAGCTCATTTGTTACAAACCTACT  284

seq1  TAATGATTCCTTTAGTCTCTAAGACTGCAAACACTCTACGAGCAGAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTCCTTTAGTCTCTAAGACTGCAAACACTCTACGAGCAGAAGTT  334

seq1  TGTATAAAGACTGAACACTAGGCTTTGAGGGCTGTTGCTGATGGCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAGACTGAACACTAGGCTTTGAGGGCTGTTGCTGATGGCTTTCT  384

seq1  TATATATCCCATGTAAAGTTGCAAGCTCATTTACATGTTAGGCACTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCCCATGTAAAGTTGCAAGCTCATTTACATGTTAGGCACTTTAT  434

seq1  TAGTTCTTTGGGGGTTCAACCTTGGGCGATTAAAAGCAATGGTATAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTTGGGGGTTCAACCTTGGGCGATTAAAAGCAATGGTATAAAAA  484

seq1  ATAAGTGGAATTTTTGCACAGGGCTTTTGGATTTGTGCTAAGGAGTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGGAATTTTTGCACAGGGCTTTTGGATTTGTGCTAAGGAGTAATA  534

seq1  GAACAATTCAGGACAGTTGTTTAATCCGTAGAGTTTTACAGATAATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATTCAGGACAGTTGTTTAATCCGTAGAGTTTTACAGATAATTTTT  584

seq1  AGTCACTATTACCTAACTATTCCCTCTGAAGCACAACACTGATTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTATTACCTAACTATTCCCTCTGAAGCACAACACTGATTTTTTTT  634

seq1  TCCATTGTGGAGAAGGGAAATTTATTATGTCTCATGGTTTCTGGACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTGGAGAAGGGAAATTTATTATGTCTCATGGTTTCTGGACTCTG  684

seq1  TATCCGGGGCTAGCTGAATCTGCTGCATTGAGCTTGAGGCGAGGCAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGGGGCTAGCTGAATCTGCTGCATTGAGCTTGAGGCGAGGCAGGTG  734

seq1  ACAGAGGCTTCTTGCCTCATCGTTACCAGGAAATGGAGAAAAAGAACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCTTCTTGCCTCATCGTTACCAGGAAATGGAGAAAAAGAACAAG  784

seq1  AAGGGGCTGATGGACCTTTCCATGGTACTCAGAGTACATGTGACATGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCTGATGGACCTTTCCATGGTACTCAGAGTACATGTGACATGGAC  834

seq1  TGTGCTGCTTTTGGGGGCCAGTCTTTTCTTTCTGCCATTTGGGTCACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCTTTTGGGGGCCAGTCTTTTCTTTCTGCCATTTGGGTCACAGG  884

seq1  GACTGAACTCGGGCTGTCGCGGTTACTGACAAGCTCTGTTACATACTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACTCGGGCTGTCGCGGTTACTGACAAGCTCTGTTACATACTGAG  934

seq1  TCATCTCACTGGTCTATTCACTATTATATAATATTATTCCACGGGATAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCACTGGTCTATTCACTATTATATAATATTATTCCACGGGATAGT  984

seq1  TTGACTTTCCTCTTCTTATGTGTTGAAGTATTGTCATGCTTCTAATGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTCCTCTTCTTATGTGTTGAAGTATTGTCATGCTTCTAATGTTC  1034

seq1  TTAGCAACCTCTCAGAATAAAAAGGATCTTATGGGATAATATAAGTTAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAACCTCTCAGAATAAAAAGGATCTTATGGGATAATATAAGTTAAG  1084

seq1  GCATGGTTACTGAATTC  1117
      |||||||||||||||||
seq2  GCATGGTTACTGAATTC  1101