BAC Information

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BAC

Clone NameB6Ng01-310B21
Chromosome10 (Build37)
Map Location 13,369,278 - 13,508,307
singlet/doubletdoublet
Overlap geneAig1
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1
Downstream geneEG666859, Hivep2, Gpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310B21.bB6Ng01-310B21.g
ACCGA102184GA102185
length1,0701,103
definitionB6Ng01-310B21.b B6Ng01-310B21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,369,278 - 13,370,353)(13,507,196 - 13,508,307)
sequence
gaattcatttccacaaaagaacaacaacagaaaaactaaaaacaaacaaa
tgaacaacaacaacaaaaaacaaaaacagacagacccatcgaagagctga
ggcaggctatacctgtggaacacaggggccaagactgaccatgaagaagg
tatccagacatattccaaagcagggagattgtttacagtagggggtactg
ttcagaaagggcgaacctggtgtttctgctatgaggctaggcaacctgga
tggacattatggagaaggggcctatttctccacatggaggcctgggtcta
acttcctcccctgacctcctattggctattctttcttcccttgtctctct
ctacctttcactcttgagcagtcttctttctggccttaaaatctggctct
ggtgagaacagttgccttagtcagagctactggggttagaagagtcttca
ctgaggacacaaatgcttcaggtgtcatgggttgacttgtacaatcacat
gccaaagtacccacagtacttcaaaatgtgtaagaatgcccagggtgtgg
tcagacattttttttccttaagaaaatactgcagcagaagccagaatgaa
cagcagtcatccatgcaaaacctctgaaagatcatctctgatggtgtggg
tctccttgaattgcagaactagcatcgtctttgagagttttagaccccaa
taaaggaccagcctggaaaaaggctcaaacacagcatgaaatgaaggacc
aatgagtcaagggctttcagtctttagtccctctttggcttcagagtaca
gcctactccctaccatgatccctgcccaggatttgggggacgttggagct
tctgttctccaggggttggaagccagggcccaggccctccttgtgagcct
tgggggccacagcattcagcctaaagggattattctcaagtctttaaatg
aaaggaaatttaccctgattgcattcatattgcttggagccatgatccct
tcagtctctttctttttccatttggtagggaccgcccaatgtaggtctgc
actagcatcatgtttagaag
gaattcacatcttacttgagcacacttaagcttttctcctcagttgcacc
tattggaaagagtgctgcttagattaaaatttgactgctaatcttcacac
atatggcaaatgtggactactcagaccacagctattttgctacattccat
ggtgtctcatttatttgtttgatttgcagctatagcaactagattccacc
atggtcggcttttacacagccgcacactgcgatcagttcggtggacgctt
ggcactcagagccagattcaattgaagacatatgcacagattcacttacc
acattttaagaaatgtttttcacacagggttagacctgtgctgtttgtct
aaaataccaaagcaaccttctgcaagtctggcgggcgattacggacgctg
cagctgccttctccataacatctcaaatctttggctttctcttgctgtac
tcttcaagcacccacctgactttgaagcaggcttcttgccttgcgctgga
agatcacccctgtgaaactaaagtgttgccctggtgccaggccattgctg
taacatccacacagctctgcacaaaaagaacggttgcaaatgaccctgaa
atggagttttgccaagtcactgaagtatgggacttcaagaagtaccattt
ctccagggacttagggaatgtgtgtgatagtgtcaggagtagtgctctga
attgggtattggattaccagatcttaacatctctgtagagtgatcttccc
tcttggctttgagagaagcacactgtaaaatgtttaaaaattaaatggaa
aaattaagtaatgaagaaaatcggtatctcactattgtttcccttaggca
aatctccctggtctctcaaccatttgctggaggaatcagaggctctaaaa
atattttttttaaatggggagataggaacttagaatggatgtgaagctaa
atagagatgagatgcattagtcgggtacgcaagtgggagagctactctcc
cttcgttgtaagctgttttgtaggtgggattttatcatcagatcggcctc
caggacggagtgttttcctctctcagtgtgtttaccagctgagtagcctg
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_13369278_13370353
seq2: B6Ng01-310B21.b_44_1113

seq1  GAATTCATTTCCACAAAAGAACAACAACAGAAAAACTAAAAACAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCACAAAAGAACAACAACAGAAAAACTAAAAACAAACAAA  50

seq1  TGAACAACAACAACAAAAAACAAAAACAGACAGACCCATCGAAGAGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACAACAACAAAAAACAAAAACAGACAGACCCATCGAAGAGCTGA  100

seq1  GGCAGGCTATACCTGTGGAACACAGGGGCCAAGACTGACCATGAAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTATACCTGTGGAACACAGGGGCCAAGACTGACCATGAAGAAGG  150

seq1  TATCCAGACATATTCCAAAGCAGGGAGATTGTTTACAGTAGGGGGTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGACATATTCCAAAGCAGGGAGATTGTTTACAGTAGGGGGTACTG  200

seq1  TTCAGAAAGGGCGAACCTGGTGTTTCTGCTATGAGGCTAGGCAACCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGGGCGAACCTGGTGTTTCTGCTATGAGGCTAGGCAACCTGGA  250

seq1  TGGACATTATGGAGAAGGGGCCTATTTCTCCACATGGAGGCCTGGGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATTATGGAGAAGGGGCCTATTTCTCCACATGGAGGCCTGGGTCTA  300

seq1  ACTTCCTCCCCTGACCTCCTATTGGCTATTCTTTCTTCCCTTGTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCCCCTGACCTCCTATTGGCTATTCTTTCTTCCCTTGTCTCTCT  350

seq1  CTACCTTTCACTCTTGAGCAGTCTTCTTTCTGGCCTTAAAATCTGGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTCACTCTTGAGCAGTCTTCTTTCTGGCCTTAAAATCTGGCTCT  400

seq1  GGTGAGAACAGTTGCCTTAGTCAGAGCTACTGGGGTTAGAAGAGTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAACAGTTGCCTTAGTCAGAGCTACTGGGGTTAGAAGAGTCTTCA  450

seq1  CTGAGGACACAAATGCTTCAGGTGTCATGGGTTGACTTGTACAATCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACACAAATGCTTCAGGTGTCATGGGTTGACTTGTACAATCACAT  500

seq1  GCCAAAGTACCCACAGTACTTCAAAATGTGTAAGAATGCCCAGGGTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGTACCCACAGTACTTCAAAATGTGTAAGAATGCCCAGGGTGTGG  550

seq1  TCAGACATTTTTTTTCCTTAAGAAAATACTGCAGCAGAAGCCAGAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATTTTTTTTCCTTAAGAAAATACTGCAGCAGAAGCCAGAATGAA  600

seq1  CAGCAGTCATCCATGCAAAACCTCTGAAAGATCATCTCTGATGGTGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTCATCCATGCAAAACCTCTGAAAGATCATCTCTGATGGTGTGGG  650

seq1  TCTCCTTGAATTGCAGAACTAGCATCGTCTTTGAGAGTTTTAGACCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGAATTGCAGAACTAGCATCGTCTTTGAGAGTTTTAGACCCCAA  700

seq1  TAAAGGACCAGCCTGGAAAAAGGCTCAAACACAGCATGAAATGAAGGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGACCAGCCTGGAAAAAGGCTCAAACACAGCATGAAATGAAGGACC  750

seq1  AATGAGTCAAGGGCTTTCAGTCTTTAGTCCCTCTTTGGCTTCAGAGTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTCAAGGGCTTTCAGTCTTTAGTCCCTCTTTGGCTTCAGAGTACA  800

seq1  GCCTACTCCCTACCATGATCCCTGCCCAGGATTTGGGGGACGTTGGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTCCCTACCATGATCCCTGCCCAGGATTTGGGGGACGTTGGAGCT  850

seq1  TCTGTTCTCCAGGGGTTGGAAGCCAGGGCCCAGGCCCTCCTTGTGAGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTCCAGGGGTTGGAAGCCAGGGCCCAGGCCCTCCTTGTGAGCCT  900

seq1  TGGGGGCCACAGCATTCAGCCTAAGGGGATTATTCTCAAGTCTTTAAATG  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGGGGCCACAGCATTCAGCCTAAAGGGATTATTCTCAAGTCTTTAAATG  950

seq1  AAAGGAAATTTACCCTGATTGCATTCATATTTGCTTGGGAGCCATGATCC  1000
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  AAAGGAAATTTACCCTGATTGCATTCATA-TTGCTT-GGAGCCATGATCC  998

seq1  CTTCAGTCTCTTTCTTTTTTCCCATTTGGTAGGGGACCGCCCATTGTAGG  1050
      |||||||||||||||||||  |||||||||| ||||||||||| ||||||
seq2  CTTCAGTCTCTTTCTTTTT--CCATTTGGTA-GGGACCGCCCAATGTAGG  1045

seq1  TCTGCACTAGCATCATGTTTTAGAAG  1076
      ||||||||||||||||| ||||||||
seq2  TCTGCACTAGCATCATG-TTTAGAAG  1070

seq1: chr10_13507196_13508307
seq2: B6Ng01-310B21.g_66_1168 (reverse)

seq1  ACACAGCTTACTCAGCTGGTAAACACACTGAGAGA-GAAAACACTCCCTT  49
      ||||||  ||||||||||||||||||||||||||| ||||||||| || |
seq2  ACACAGGCTACTCAGCTGGTAAACACACTGAGAGAGGAAAACACT-CCGT  49

seq1  CCTGGAGCCCGAATCTGATGGATTAAAATCCCACCTAC-AAACAGCTTAC  98
      ||||||| ||| ||||||||   ||||||||||||||| |||||||||||
seq2  CCTGGAGGCCG-ATCTGATG--ATAAAATCCCACCTACAAAACAGCTTAC  96

seq1  AACGGAAGGGAGAGTTAGCTCTTCCCACTTGCCGTACCCGACTAATTGCA  148
      ||| |||||||||| |||||| ||||||||| ||||||||||||| ||||
seq2  AAC-GAAGGGAGAG-TAGCTC-TCCCACTTG-CGTACCCGACTAA-TGCA  141

seq1  TCTTCATCTCTATTTTAGCTTCACATCCATTCTAAGTTCCTATCTCCCCA  198
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TC-TCATCTCTA-TTTAGCTTCACATCCATTCTAAGTTCCTATCTCCCCA  189

seq1  TTTAAAAAAAATATTTTTAGAGCCTCTGATTCCTCCAGCAAATGGTTGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAATATTTTTAGAGCCTCTGATTCCTCCAGCAAATGGTTGAG  239

seq1  AGACCAGGGAGATTTGCCTAAGGGAAACAATAGTGAGATACCGATTTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGGAGATTTGCCTAAGGGAAACAATAGTGAGATACCGATTTTCT  289

seq1  TCATTACTTAATTTTTCCATTTAATTTTTAAACATTTTACAGTGTGCTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTTAATTTTTCCATTTAATTTTTAAACATTTTACAGTGTGCTTC  339

seq1  TCTCAAAGCCAAGAGGGAAGATCACTCTACAGAGATGTTAAGATCTGGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGCCAAGAGGGAAGATCACTCTACAGAGATGTTAAGATCTGGTA  389

seq1  ATCCAATACCCAATTCAGAGCACTACTCCTGACACTATCACACACATTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATACCCAATTCAGAGCACTACTCCTGACACTATCACACACATTCC  439

seq1  CTAAGTCCCTGGAGAAATGGTACTTCTTGAAGTCCCATACTTCAGTGACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCCCTGGAGAAATGGTACTTCTTGAAGTCCCATACTTCAGTGACT  489

seq1  TGGCAAAACTCCATTTCAGGGTCATTTGCAACCGTTCTTTTTGTGCAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAACTCCATTTCAGGGTCATTTGCAACCGTTCTTTTTGTGCAGAG  539

seq1  CTGTGTGGATGTTACAGCAATGGCCTGGCACCAGGGCAACACTTTAGTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGATGTTACAGCAATGGCCTGGCACCAGGGCAACACTTTAGTTT  589

seq1  CACAGGGGTGATCTTCCAGCGCAAGGCAAGAAGCCTGCTTCAAAGTCAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGGTGATCTTCCAGCGCAAGGCAAGAAGCCTGCTTCAAAGTCAGG  639

seq1  TGGGTGCTTGAAGAGTACAGCAAGAGAAAGCCAAAGATTTGAGATGTTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTTGAAGAGTACAGCAAGAGAAAGCCAAAGATTTGAGATGTTAT  689

seq1  GGAGAAGGCAGCTGCAGCGTCCGTAATCGCCCGCCAGACTTGCAGAAGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGCAGCTGCAGCGTCCGTAATCGCCCGCCAGACTTGCAGAAGGT  739

seq1  TGCTTTGGTATTTTAGACAAACAGCACAGGTCTAACCCTGTGTGAAAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGTATTTTAGACAAACAGCACAGGTCTAACCCTGTGTGAAAAAC  789

seq1  ATTTCTTAAAATGTGGTAAGTGAATCTGTGCATATGTCTTCAATTGAATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAAAATGTGGTAAGTGAATCTGTGCATATGTCTTCAATTGAATC  839

seq1  TGGCTCTGAGTGCCAAGCGTCCACCGAACTGATCGCAGTGTGCGGCTGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGAGTGCCAAGCGTCCACCGAACTGATCGCAGTGTGCGGCTGTG  889

seq1  TAAAAGCCGACCATGGTGGAATCTAGTTGCTATAGCTGCAAATCAAACAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCCGACCATGGTGGAATCTAGTTGCTATAGCTGCAAATCAAACAA  939

seq1  ATAAATGAGACACCATGGAATGTAGCAAAATAGCTGTGGTCTGAGTAGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAGACACCATGGAATGTAGCAAAATAGCTGTGGTCTGAGTAGTC  989

seq1  CACATTTGCCATATGTGTGAAGATTAGCAGTCAAATTTTAATCTAAGCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGCCATATGTGTGAAGATTAGCAGTCAAATTTTAATCTAAGCAG  1039

seq1  CACTCTTTCCAATAGGTGCAACTGAGGAGAAAAGCTTAAGTGTGCTCAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTTCCAATAGGTGCAACTGAGGAGAAAAGCTTAAGTGTGCTCAAG  1089

seq1  TAAGATGTGAATTC  1112
      ||||||||||||||
seq2  TAAGATGTGAATTC  1103