BAC Information

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BAC

Clone NameB6Ng01-310I21
Chromosome10 (Build37)
Map Location 40,436,563 - 40,583,133
singlet/doubletdoublet
Overlap gene9030224M15Rik, Cdc40
Upstream geneE130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo
Downstream geneWasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310I21.bB6Ng01-310I21.g
ACCGA102499GA102500
length1,164628
definitionB6Ng01-310I21.b B6Ng01-310I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,436,563 - 40,437,726)(40,582,509 - 40,583,133)
sequence
gaattctcctaccctgcccccaaattaataaaaacgccgttctcaactct
gagagatgtatcatgctcttttctctctggcatttaaactaatgtaaaaa
tgtcccttggaaccagttctgtgggggattgcaagggacatgtggtgtct
tcataaggctcctagttaagccaactcccctgcatcagatcataccaaat
agtacaaagtgagaggcaagaagaatatcagcaaagcatctgccccacgt
agtttactttgcacatagcagaggcctgaaaaactaggactcttaaaagc
agcttgtgactaacactggaccagaaaggataagccagctttgaacctag
tacaagttagtgaattctcctaccctgcccccaaattaataaactaataa
agaagagggagggtcctggacaggaggggaagccctggctcagtgtggta
taagccagatgcacttagagaacagatcacacagtaggactagttttgcc
acagaaatttccttataggttccttcagagtgtgccctagctcctctgtg
tcttgactctcagttgtccttggctgtatttcttttctttctctatctaa
gaatcccaaacagcccattgtttgcctgttccctctattcagtctctaaa
ggtgtggcactgggaagattctgtgaccatgtggccatctcagtagtaaa
tgtcttttaccccctcagtgcctgtcagtcaggacaggctaggtaatgct
gcagtaacaaacattcatgtggatttcaaatttaagagggtttaaaacaa
ctaattttattcctcactcttgctacatattcagtgtgggttggagaagg
cgatgaagcacacagtctcaattgctgctgtcattcagaggctcgtgtga
ccctgatatcaccatccatcagcacggcctagatcaacttaaccctccct
tttaactactgagcatttattatacataacgttgtcagattgcatgggcg
agtttctagcatgcccgctattctatgggataaaacagttttacaaattt
gtcccactgcatcaatgactgttgtgagtgcagccagccactgtgtgcct
tttttctgcataggccctctgaagttctagtagcctggctattctataga
tcagacaacatgag
gaattccataccccttaaaccagctatacttttaggggaagtgtgagtgt
gtgtgtgtgagtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtaaattcaaagaacaaatattagttgctattaaaataatctatta
taagagctgcttaaatattagtgctttagaaatactgtagcttccgtctt
ctgagaagattgagcccgaggttgtcagcagcagcagtgaagtgctctgt
gtaagtaacagtcagactccacttacctctcacagaattattctgccaaa
aaaacctgtctggatctgttcatgatttgtagaaataatttggtaaataa
attcttctagctttaaagtatgtttataagttttagacattaatgacact
atgaatattaatgaacaatttagcaatagctacaatattagttctcacca
ctgtgggctttccttgtatataaactactagttttggcttcatgtaatct
atttttacctgtatacgttttcttaattccaatgatgttgtgatacactg
ctgagatattgagtctcctgaaagacttctgagaatctcaacctatgaga
acattttttcttactttttttggtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40436563_40437726
seq2: B6Ng01-310I21.b_46_1209

seq1  GAATTCTCCTACCCTGCCCCCAAATTAATAAAAACGCCGTTCTCAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTACCCTGCCCCCAAATTAATAAAAACGCCGTTCTCAACTCT  50

seq1  GAGAGATGTATCATGCTCTTTTCTCTCTGGCATTTAAACTAATGTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGTATCATGCTCTTTTCTCTCTGGCATTTAAACTAATGTAAAAA  100

seq1  TGTCCCTTGGAACCAGTTCTGTGGGGGATTGCAAGGGACATGTGGTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTGGAACCAGTTCTGTGGGGGATTGCAAGGGACATGTGGTGTCT  150

seq1  TCATAAGGCTCCTAGTTAAGCCAACTCCCCTGCATCAGATCATACCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGCTCCTAGTTAAGCCAACTCCCCTGCATCAGATCATACCAAAT  200

seq1  AGTACAAAGTGAGAGGCAAGAAGAATATCAGCAAAGCATCTGCCCCACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAAGTGAGAGGCAAGAAGAATATCAGCAAAGCATCTGCCCCACGT  250

seq1  AGTTTACTTTGCACATAGCAGAGGCCTGAAAAACTAGGACTCTTAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTTTGCACATAGCAGAGGCCTGAAAAACTAGGACTCTTAAAAGC  300

seq1  AGCTTGTGACTAACACTGGACCAGAAAGGATAAGCCAGCTTTGAACCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGACTAACACTGGACCAGAAAGGATAAGCCAGCTTTGAACCTAG  350

seq1  TACAAGTTAGTGAATTCTCCTACCCTGCCCCCAAATTAATAAACTAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTAGTGAATTCTCCTACCCTGCCCCCAAATTAATAAACTAATAA  400

seq1  AGAAGAGGGAGGGTCCTGGACAGGAGGGGAAGCCCTGGCTCAGTGTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGAGGGTCCTGGACAGGAGGGGAAGCCCTGGCTCAGTGTGGTA  450

seq1  TAAGCCAGATGCACTTAGAGAACAGATCACACAGTAGGACTAGTTTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGATGCACTTAGAGAACAGATCACACAGTAGGACTAGTTTTGCC  500

seq1  ACAGAAATTTCCTTATAGGTTCCTTCAGAGTGTGCCCTAGCTCCTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATTTCCTTATAGGTTCCTTCAGAGTGTGCCCTAGCTCCTCTGTG  550

seq1  TCTTGACTCTCAGTTGTCCTTGGCTGTATTTCTTTTCTTTCTCTATCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTCTCAGTTGTCCTTGGCTGTATTTCTTTTCTTTCTCTATCTAA  600

seq1  GAATCCCAAACAGCCCATTGTTTGCCTGTTCCCTCTATTCAGTCTCTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCAAACAGCCCATTGTTTGCCTGTTCCCTCTATTCAGTCTCTAAA  650

seq1  GGTGTGGCACTGGGAAGATTCTGTGACCATGTGGCCATCTCAGTAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGCACTGGGAAGATTCTGTGACCATGTGGCCATCTCAGTAGTAAA  700

seq1  TGTCTTTTACCCCCTCAGTGCCTGTCAGTCAGGACAGGCTAGGTAATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTACCCCCTCAGTGCCTGTCAGTCAGGACAGGCTAGGTAATGCT  750

seq1  GCAGTAACAAACATTCATGTGGATTTCAAATTTAAGAGGGTTTAAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAACAAACATTCATGTGGATTTCAAATTTAAGAGGGTTTAAAACAA  800

seq1  CTAATTTTATTCCTCACTCTTGCTACATATTCAGTGTGGGTTGGAGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTATTCCTCACTCTTGCTACATATTCAGTGTGGGTTGGAGAAGG  850

seq1  CGATGAAGCACACAGTCTCAATTGCTGCTGTCATTCAGAGGCTCGTGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAAGCACACAGTCTCAATTGCTGCTGTCATTCAGAGGCTCGTGTGA  900

seq1  CCCTGATATCACCATCCATCAGCACGGCCTAGATCAACTTAACCCTCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATATCACCATCCATCAGCACGGCCTAGATCAACTTAACCCTCCCT  950

seq1  TTTAACTACTGAGCATTTATTATACATAACGTTGTCAGA-TGCATGGGCG  999
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTAACTACTGAGCATTTATTATACATAACGTTGTCAGATTGCATGGGCG  1000

seq1  AGTTTCTTAGCATGCCCGCTATCTTAT-GGAT-AAACAGTTTTACAAATT  1047
      |||||| |||||||||||||||  ||| |||| |||||||||||||||||
seq2  AGTTTC-TAGCATGCCCGCTATTCTATGGGATAAAACAGTTTTACAAATT  1049

seq1  TGTTCCCACTGCATCAATGACTG-TGTGAGTGCAGGCCAGCCACTGTG--  1094
      || |||||||||||||||||||| |||||||||| |||||||||||||  
seq2  TG-TCCCACTGCATCAATGACTGTTGTGAGTGCA-GCCAGCCACTGTGTG  1097

seq1  --CTTTTCCTGCATAGGCCCTTCTGAAGTTTCTAGTAGCTTGGCCTATCT  1142
         |||| |||||||||||| ||||||| |||||||||| ||||   |||
seq2  CCTTTTTTCTGCATAGGCCC-TCTGAAG-TTCTAGTAGCCTGGCTATTCT  1145

seq1  ATAGGATCAAGACAACCATGAG  1164
      ||| |||| |||||| ||||||
seq2  ATA-GATC-AGACAA-CATGAG  1164

seq1: chr10_40582509_40583133
seq2: B6Ng01-310I21.g_66_693 (reverse)

seq1  CACCACC-AAAAAAGAAAGAAAAAA-GTTCTCATAGGTTGAGATTCTCAG  48
      ||||||| ||||||| ||||||||| ||||||||||||||||||||||||
seq2  CACCACCAAAAAAAGTAAGAAAAAATGTTCTCATAGGTTGAGATTCTCAG  50

seq1  AAGTC-TTCAGGAGACTCAATATCTCAGCAGTGTATCACAACATCATTGG  97
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTCAGGAGACTCAATATCTCAGCAGTGTATCACAACATCATTGG  100

seq1  AATTAAGAAAACGTATACAGGTAAAAATAGATTACATGAAGCCAAAACTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAAAACGTATACAGGTAAAAATAGATTACATGAAGCCAAAACTA  150

seq1  GTAGTTTATATACAAGGAAAGCCCACAGTGGTGAGAACTAATATTGTAGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTATATACAAGGAAAGCCCACAGTGGTGAGAACTAATATTGTAGC  200

seq1  TATTGCTAAATTGTTCATTAATATTCATAGTGTCATTAATGTCTAAAACT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTAAATTGTTCATTAATATTCATAGTGTCATTAATGTCTAAAACT  250

seq1  TATAAACATACTTTAAAGCTAGAAGAATTTATTTACCAAATTATTTCTAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACATACTTTAAAGCTAGAAGAATTTATTTACCAAATTATTTCTAC  300

seq1  AAATCATGAACAGATCCAGACAGGTTTTTTTGGCAGAATAATTCTGTGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGAACAGATCCAGACAGGTTTTTTTGGCAGAATAATTCTGTGAG  350

seq1  AGGTAAGTGGAGTCTGACTGTTACTTACACAGAGCACTTCACTGCTGCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGTGGAGTCTGACTGTTACTTACACAGAGCACTTCACTGCTGCTG  400

seq1  CTGACAACCTCGGGCTCAATCTTCTCAGAAGACGGAAGCTACAGTATTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAACCTCGGGCTCAATCTTCTCAGAAGACGGAAGCTACAGTATTTC  450

seq1  TAAAGCACTAATATTTAAGCAGCTCTTATAATAGATTATTTTAATAGCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACTAATATTTAAGCAGCTCTTATAATAGATTATTTTAATAGCAA  500

seq1  CTAATATTTGTTCTTTGAATTTACACACACACACACACACACACACACAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTTGTTCTTTGAATTTACACACACACACACACACACACACACAC  550

seq1  ACACTCACACACACACACTCACACACACACACTCACACTTCCCCTAAAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACACACACTCACACACACACACTCACACTTCCCCTAAAAG  600

seq1  TATAGCTGGTTTAAGGGGTATGGAATTC  625
      ||||||||||||||||||||||||||||
seq2  TATAGCTGGTTTAAGGGGTATGGAATTC  628