BAC Information

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BAC

Clone NameB6Ng01-311A16
Chromosome10 (Build37)
Map Location 127,888,905 - 128,034,201
singlet/doubletdoublet
Overlap geneSmarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3
Upstream geneR3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41
Downstream geneLOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311A16.bB6Ng01-311A16.g
ACCGA102859GA102860
length1,002565
definitionB6Ng01-311A16.b B6Ng01-311A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,888,905 - 127,889,899)(128,033,645 - 128,034,201)
sequence
gaattcagttctcaggacccatcatagctcaagactgcctatgattccag
cccaggagatctgatgccttacctctatgggtcctgacacatgcatacat
atatacatatgaatgaacttaatcccagcatggaggaggcagaggtaagt
gaatctctgtgagcgaagggccagcctagtctacacagcaagttcccagg
actgccagggctcttacacagggaaaccctgcctcaaaaaaaaaaattac
atatatacatatacatttatatacatatacacacacacacatatatacat
acacacacatatgtaaaactattttgatgaaaatcttaagatttttgtag
ctgaagtcattacagagtggtattagtctgctgctgtttataacaagaac
agttaataacaagcaggaattaggccatcatatggagatgatcaatctgt
ttagatgtctgatatctcctgggaagaacagaatgttagaaggaacgggt
ctgacagaactcagaggaattaagctggatctcaccaggaagtttcttcc
aaggacaggctgccattgtgccaggaggccttgtgcatcttcaacaggag
aaaactaatcaagaatcctacataccgataaagtctgtgaaccaaaagga
cagccagcatggcaagagaaccctaagcatgcaatagcggcttcaactgg
atttaaggaccactcagtaggaagaatgcatgcctggtaaacctagctga
ctgttgtagctaatgaggtctcgagtcttagtgccactttcttgaaccag
tgcaatggcatcctaaatacttatcctaatacccatgggagaagtgtagc
ttttcacccctcacaagagaagcttcattttaatgcagacatgagaccat
tacagaaagccacggctgaccaaaaatgcagaggcaactgactattggga
tgtccagtaccaactgatacattcttccttcacaattccttacatcttaa
gt
ttggccagactggtttacatagtgagctccatgccagcaaggctacacag
tgagaccctatctcaaataaatgaatacaataagtacaattttaaaaata
aaaagtagctgggcagtggtggtgcaagcctttaatcccagcacttggga
ggcagaggcaggcagatttctaaattcaaggccagtctggtatacagagt
gagttccaggacagccagggctacacaaagaaatcctgtctggaaaaacc
agatagatagatagatagatagatagatagatagatagatagatagatag
tatgacatttgtgtggttatttgtatgtgtgttcgcgtgcgcgtgcacat
gcacgtgcatccatatactcacaacatggctgtgtgtggaggtcagaaga
ccaccggcaggatttggttctctcctccaccttgtgggtccaggggctaa
aactcctgttctcaggcttggcagtgtcatctcattggtccacaaaagcc
agcttcttatcaggtagagtgtctacatctgtcttgggatatactctgca
gaaactattaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127888905_127889899
seq2: B6Ng01-311A16.b_48_1049

seq1  GAATTCAGTTCTCAGGACCCATCATAGCTCAAGACTGCCTATGATTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCAGGACCCATCATAGCTCAAGACTGCCTATGATTCCAG  50

seq1  CCCAGGAGATCTGATGCCTTACCTCTATGGGTCCTGACACATGCATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGATCTGATGCCTTACCTCTATGGGTCCTGACACATGCATACAT  100

seq1  ATATACATATGAATGAACTTAATCCCAGCATGGAGGAGGCAGAGGTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATGAATGAACTTAATCCCAGCATGGAGGAGGCAGAGGTAAGT  150

seq1  GAATCTCTGTGAGCGAAGGGCCAGCCTAGTCTACACAGCAAGTTCCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTGTGAGCGAAGGGCCAGCCTAGTCTACACAGCAAGTTCCCAGG  200

seq1  ACTGCCAGGGCTCTTACACAGGGAAACCCTGCCTCAAAAAAAAAAATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGGGCTCTTACACAGGGAAACCCTGCCTCAAAAAAAAAAATTAC  250

seq1  ATATATACATATACATTTATATACATATACACACACACACATATATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACATATACATTTATATACATATACACACACACACATATATACAT  300

seq1  ACACACACATATGTAAAACTATTTTGATGAAAATCTTAAGATTTTTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATATGTAAAACTATTTTGATGAAAATCTTAAGATTTTTGTAG  350

seq1  CTGAAGTCATTACAGAGTGGTATTAGTCTGCTGCTGTTTATAACAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTCATTACAGAGTGGTATTAGTCTGCTGCTGTTTATAACAAGAAC  400

seq1  AGTTAATAACAAGCAGGAATTAGGCCATCATATGGAGATGATCAATCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAACAAGCAGGAATTAGGCCATCATATGGAGATGATCAATCTGT  450

seq1  TTAGATGTCTGATATCTCCTGGGAAGAACAGAATGTTAGAAGGAACGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTCTGATATCTCCTGGGAAGAACAGAATGTTAGAAGGAACGGGT  500

seq1  CTGACAGAACTCAGAGGAATTAAGCTGGATCTCACCAGGAAGTTTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGAACTCAGAGGAATTAAGCTGGATCTCACCAGGAAGTTTCTTCC  550

seq1  AAGGACAGGCTGCCATTGTGCCAGGAGGCCTTGTGCATCTTCAACAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGGCTGCCATTGTGCCAGGAGGCCTTGTGCATCTTCAACAGGAG  600

seq1  AAAACTAATCAAGAATCCTACATACCGATAAAGTCTGTGAACCAAAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAATCAAGAATCCTACATACCGATAAAGTCTGTGAACCAAAAGGA  650

seq1  CAGCCAGCATGGCAAGAGAACCCTAAGCATGCAATAGCGGCTTCAACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCATGGCAAGAGAACCCTAAGCATGCAATAGCGGCTTCAACTGG  700

seq1  ATTTAAGGACCACTCAGTAGGAAGAATGCATGCCTGGTAAACCTAGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGACCACTCAGTAGGAAGAATGCATGCCTGGTAAACCTAGCTGA  750

seq1  CTGTTGTAGCTAATGAGGTCTCGAGTCTTAGTGCCACTTTCTTGAACCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTAGCTAATGAGGTCTCGAGTCTTAGTGCCACTTTCTTGAACCAG  800

seq1  TGCAATGGCATCCTAAATACTTATCCTAATACCCAT-GGAGAAGTGTAGC  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCAATGGCATCCTAAATACTTATCCTAATACCCATGGGAGAAGTGTAGC  850

seq1  -TTTCACCCCTCACAAGAGAAGCTTCATTTTAATGCAGACATGAGACCAT  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCCCTCACAAGAGAAGCTTCATTTTAATGCAGACATGAGACCAT  900

seq1  TACAGAAAGCCACGGCTGACCAAAAATGCAGAGGCAACTGACTA-TGGGA  947
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TACAGAAAGCCACGGCTGACCAAAAATGCAGAGGCAACTGACTATTGGGA  950

seq1  TGTCCAGTACCAACTGATACAT--CTCCTTCACAA-TCCCTACATC-TAA  993
      ||||||||||||||||||||||   |||||||||| ||| |||||| |||
seq2  TGTCCAGTACCAACTGATACATTCTTCCTTCACAATTCCTTACATCTTAA  1000

seq1  GT  995
      ||
seq2  GT  1002

seq1: chr10_128033645_128034201
seq2: B6Ng01-311A16.g_79_635 (reverse)

seq1  GAATTT-ATAGTTTCTGCAGAGTGTATCCCATGACAGATGTATGACACTC  49
      |||||| |||||||||||||||| ||||||| |||||||||| |||||||
seq2  GAATTTAATAGTTTCTGCAGAGTATATCCCAAGACAGATGTA-GACACTC  49

seq1  TACCTGATAAGAAGCTGGCTTTTGTGGACCAATGAGATGACACTGCCAAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGATAAGAAGCTGGCTTTTGTGGACCAATGAGATGACACTGCCAAG  99

seq1  CCTGAGAACAGGAGTTTTAGCCCCTGGACCCACAAGGTGGAGGAGAGAAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAACAGGAGTTTTAGCCCCTGGACCCACAAGGTGGAGGAGAGAAC  149

seq1  CAAATCCTGCCGGTGGTCTTCTGACCTCCACACACAGCCATGTTGTGAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTGCCGGTGGTCTTCTGACCTCCACACACAGCCATGTTGTGAGT  199

seq1  ATATGGATGCACGTGCATGTGCACGCGCACGCGAACACACATACAAATAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATGCACGTGCATGTGCACGCGCACGCGAACACACATACAAATAA  249

seq1  CCACACAAATGTCATACTATCTATCTATCTATCTATCTATCTATCTATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAAATGTCATACTATCTATCTATCTATCTATCTATCTATCTATCT  299

seq1  ATCTATCTATCTATCTGGTTTTTCCAGACAGGATTTCTTTGTGTAGCCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTGGTTTTTCCAGACAGGATTTCTTTGTGTAGCCCT  349

seq1  GGCTGTCCTGGAACTCACTCTGTATACCAGACTGGCCTTGAATTTAGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCACTCTGTATACCAGACTGGCCTTGAATTTAGAAA  399

seq1  TCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCTTGCACCACCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCTTGCACCACCA  449

seq1  CTGCCCAGCTACTTTTTATTTTTAAAATTGTACTTATTGTATTCATTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGCTACTTTTTATTTTTAAAATTGTACTTATTGTATTCATTTAT  499

seq1  TTGAGATAGGGTCTCACTGTGTAGCCTTGCTGGCATGGAGCTCACTATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAGGGTCTCACTGTGTAGCCTTGCTGGCATGGAGCTCACTATGT  549

seq1  AAACCAGT  557
      ||||||||
seq2  AAACCAGT  557