BAC Information

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BAC

Clone NameB6Ng01-311P20
Chromosome10 (Build37)
Map Location 82,465,732 - 82,565,314
singlet/doubletdoublet
Overlap geneChst11
Upstream geneEG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185
Downstream geneSlc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311P20.bB6Ng01-311P20.g
ACCGA103571GA103572
length9431,161
definitionB6Ng01-311P20.b B6Ng01-311P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,465,732 - 82,466,673)(82,564,140 - 82,565,314)
sequence
gaattcacttctaaaaatgtcatttaaaaataattttttaaattttaatc
accttggtgttttgcctgcatgtatatctgcgtgaaggtgtcaagatctt
ggagttacagacagttgtaagctgccatacgggtgctgagaattgaaccc
agtattatggtatgtcttggttttaccactaagcactgaaactcagttct
cttggaaaatagactatcctgtcacgtggatgcattttaatggaattctg
ctttctcgttggacagttctgaaaacaagttgtttttctgtcttttgttt
tatgtgtatgggttttgtgtttgttttgttttttcaagacagggcttctc
tgtgtacttctggtggtccaggaagtcactccataggccttgaacttgca
gagatccatctgcctctgcctagaaggtgctggatcaaaggggacttaga
gtcaccaccgcctggctctaaagacttctttgaaagatgtattcagactc
cgagacactgtaaacatcccaaggctcctggtagaaggatccagttgttt
tttagaatgctgtgtacattcatattcccatcagagcgtgtgactgtgtc
ctagctaggatgatccggctagtgtccaggtccgtccacacaagataaca
ggtctcaggagggtccagactggctcttctgctgccggccggccacaggc
ttgtagtaaatgttgttgacatgtgtttgaatgacggagcccaggagggt
ttatcagacagttgaggagacagttgtcaccagggagcacttttcccaca
gctttgaaggaaagggaagctcgggtgttggtgacaagctttggtgacac
ggccacttctctagttgtagaattgtcctcaaggctgagatggatgttgc
tggcttacccatcaccctttcatccgatcttagttagtctttc
gaattctttaccttatttagcctcagggctttcatcgaacctgaagctca
cagattctgtaggactacaggccagtgaggtgcgggaatccttgtttgcc
tacctccccgatgctgggattgcaacacagggcaccacaccaaaccccac
acctacgacaccacaagacacacgaaacgccagctttctttttaaccccc
ttcttaaaatcaatgtgatagggatctgaattcaggtccctcatgcttgt
gtggcaaacactgcccaaccaagcgtctccctggaccttgtttgtttaga
cacggggtctcctgtagcctaggctggcctcaggttccacaatgataact
ttccatttctgaaccctttgctttcccctcccaagggctgcgattacaag
tctgtaccaccatgctgtcgttcctgcagaattgggaagcaaacccaggg
ctttgtgccttgtctgtgtgagttagccttgccgctcattcgctcagcta
gcaactatgcacagcttatacagagccagcgctctcaccaacagaagccc
agtgaacccattactaaccagggccacagaccctctctggatggacagct
caaggcctggcctgcctgcagcctgctcgggcttgctctcactggcaggt
ccctcctgttaatgaggggacagacccagaactctccatcagcaccactc
tgccaacaccagtactggtagggctttaccagaatggaagatggctgcca
aaccacctccattgacatctgaagaacaagcagaacacggaaataggccc
ttgtgggcaaggaacatgaaccaaaaagaaacttacacatggttactatg
tctgggccgggaatgctcaaaaaggaacatctaaaaacagctgcctaaca
ttttttattttttattttaggaaacaaaaaaaagttccaaacccatagaa
gtgctagcttccctgcaacttccctgagtcagaacattgtctctagctcc
gcaaacacacctctggcttggggagtgcctcagtctagctcacaagtgct
gtgtggagtctgagggagagctagcaagcaaggaggggacttgtactgta
gctccctctccattttctgatccaccacttggacgagtattctgagacct
atggggaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_82465732_82466673
seq2: B6Ng01-311P20.b_47_989

seq1  GAATTCACTTCTAAAAATGTCATTTAAAAATAATTTTTTAAATTTTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTAAAAATGTCATTTAAAAATAATTTTTTAAATTTTAATC  50

seq1  ACCTTGGTGTTTTGCCTGCATGTATATCTGCGTGAAGGTGTCAAGATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTGTTTTGCCTGCATGTATATCTGCGTGAAGGTGTCAAGATCTT  100

seq1  GGAGTTACAGACAGTTGTAAGCTGCCATACGGGTGCTGAGAATTGAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTACAGACAGTTGTAAGCTGCCATACGGGTGCTGAGAATTGAACCC  150

seq1  AGTATTATGGTATGTCTTGGTTTTACCACTAAGCACTGAAACTCAGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTATGGTATGTCTTGGTTTTACCACTAAGCACTGAAACTCAGTTCT  200

seq1  CTTGGAAAATAGACTATCCTGTCACGTGGATGCATTTTAATGGAATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAATAGACTATCCTGTCACGTGGATGCATTTTAATGGAATTCTG  250

seq1  CTTTCTCGTTGGACAGTTCTGAAAACAAGTTGTTTTTCTGTCTTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCGTTGGACAGTTCTGAAAACAAGTTGTTTTTCTGTCTTTTGTTT  300

seq1  TATGTGTATGGGTTTTGTGTTTGTTTTGTTTTTTCAAGACAGGGCTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATGGGTTTTGTGTTTGTTTTGTTTTTTCAAGACAGGGCTTCTC  350

seq1  TGTGTACTTCTGGTGGTCCAGGAAGTCACTCCATAGGCCTTGAACTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTTCTGGTGGTCCAGGAAGTCACTCCATAGGCCTTGAACTTGCA  400

seq1  GAGATCCATCTGCCTCTGCCTAGAAGGTGCTGGATCAAAGGGGACTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCATCTGCCTCTGCCTAGAAGGTGCTGGATCAAAGGGGACTTAGA  450

seq1  GTCACCACCGCCTGGCTCTAAAGACTTCTTTGAAAGATGTATTCAGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACCGCCTGGCTCTAAAGACTTCTTTGAAAGATGTATTCAGACTC  500

seq1  CGAGACACTGTAAACATCCCAAGGCTCCTGGTAGAAGGATCCAGTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACACTGTAAACATCCCAAGGCTCCTGGTAGAAGGATCCAGTTGTTT  550

seq1  TTTAGAATGCTGTGTACATTCATATTCCCATCAGAGCGTGTGACTGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATGCTGTGTACATTCATATTCCCATCAGAGCGTGTGACTGTGTC  600

seq1  CTAGCTAGGATGATCCGGCTAGTGTCCAGGTCCGTCCACACAAGATAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAGGATGATCCGGCTAGTGTCCAGGTCCGTCCACACAAGATAACA  650

seq1  GGTCTCAGGAGGGTCCAGACTGGCTCTTCTGCTGCCGGCCGGCCACAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAGGAGGGTCCAGACTGGCTCTTCTGCTGCCGGCCGGCCACAGGC  700

seq1  TTGTAGTAAATGTTGTTGACATGTGTTTGAATGACGGAGCCCAGGAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTAAATGTTGTTGACATGTGTTTGAATGACGGAGCCCAGGAGGGT  750

seq1  TTATCAGACAGTTGAGGAGACAGTTGTCACCAGGGAGCACTTTTCCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGACAGTTGAGGAGACAGTTGTCACCAGGGAGCACTTTTCCCACA  800

seq1  GGCTTTGAAGGAAAGGGAAGCTCGGGTGTTGGTGACAAGCTTTGGTGACA  850
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GCTTTGAAGGAAAGGGAAGCTCGGGTGTTGGTGACAAGCTTTGGTGACA  849

seq1  CGGCCACTTCTCTAGTTGTAG-ATTGTCCTCAGGGCTGAGATGGATG-TG  898
      ||||||||||||||||||||| |||||||||| |||||||||||||| ||
seq2  CGGCCACTTCTCTAGTTGTAGAATTGTCCTCAAGGCTGAGATGGATGTTG  899

seq1  CTGGCTTACCCATCACCCTTTCATCTGTTCTAAGTTAGTCTTCC  942
      ||||||||||||||||||||||||| | ||| |||||||||| |
seq2  CTGGCTTACCCATCACCCTTTCATCCGATCTTAGTTAGTCTTTC  943

seq1: chr10_82564140_82565314
seq2: B6Ng01-311P20.g_70_1230 (reverse)

seq1  GTCTT-CCCATAGGGTCCTCAGAATACCTCTGTCCCCAGTGGGTGGATTC  49
      ||||| ||||||||   ||||||||| ||| || || ||| |||||| ||
seq2  GTCTTCCCCATAGG--TCTCAGAATA-CTC-GT-CCAAGT-GGTGGA-TC  43

seq1  AGGGAAAAAAATGGGAGAGGGAGCCTACAAGTAC-AGTCCCCCTTCCTGG  98
      ||     ||||| |||||||||| |||| ||||| |||||||  |||| |
seq2  AG-----AAAAT-GGAGAGGGAG-CTAC-AGTACAAGTCCCC--TCCTTG  83

seq1  CTTGGCTAACTCTCCCTCAGACT-CACACAGGCACTTTGTTGAGCTAGAC  147
      ||| |||| |||||||||||||| |||||| ||||||   ||||||||||
seq2  CTT-GCTAGCTCTCCCTCAGACTCCACACA-GCACTT--GTGAGCTAGAC  129

seq1  TGA-GCACT-CCCAAGCCAAGAGTGTGTTTGCGGAGGCTAGAGACAATG-  194
      ||| ||||| |||||||||   ||||||||||||| ||||||||||||| 
seq2  TGAGGCACTCCCCAAGCCAGAGGTGTGTTTGCGGA-GCTAGAGACAATGT  178

seq1  TCTGACTCAGGGAAGTTGCA-GGAAGCTAGCACTTCTATGGGTTTGGAAC  243
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTGACTCAGGGAAGTTGCAGGGAAGCTAGCACTTCTATGGGTTTGGAAC  228

seq1  TTTTTTTTGTTTCCTAAAATAAAAA--TAAAAATGTTAGGCAGCTGTTTT  291
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  TTTTTTTTGTTTCCTAAAATAAAAAATAAAAAATGTTAGGCAGCTGTTTT  278

seq1  TAGATGTTCCTTTTTTGAGCATTCCCGGCCCAGACATAGTAACCATGTGT  341
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTCC-TTTTTGAGCATTCCCGGCCCAGACATAGTAACCATGTGT  327

seq1  AAGTTTCTTTTTGGTTCATGTTCCTTGCCCACAAGGGCCTATTTCCGTGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTTTTGGTTCATGTTCCTTGCCCACAAGGGCCTATTTCCGTGT  377

seq1  TCTGCTTGTTCTTCAGATGTCAATGGAGGTGGTTTGGCAGCCATCTTCCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGTTCTTCAGATGTCAATGGAGGTGGTTTGGCAGCCATCTTCCA  427

seq1  TTCTGGTAAAGCCCTACCAGTACTGGTGTTGGCAGAGTGGTGCTGATGGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTAAAGCCCTACCAGTACTGGTGTTGGCAGAGTGGTGCTGATGGA  477

seq1  GAGTTCTGGGTCTGTCCCCTCATTAACAGGAGGGACCTGCCAGTGAGAGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGGGTCTGTCCCCTCATTAACAGGAGGGACCTGCCAGTGAGAGC  527

seq1  AAGCCCGAGCAGGCTGCAGGCAGGCCAGGCCTTGAGCTGTCCATCCAGAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCGAGCAGGCTGCAGGCAGGCCAGGCCTTGAGCTGTCCATCCAGAG  577

seq1  AGGGTCTGTGGCCCTGGTTAGTAATGGGTTCACTGGGCTTCTGTTGGTGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGTGGCCCTGGTTAGTAATGGGTTCACTGGGCTTCTGTTGGTGA  627

seq1  GAGCGCTGGCTCTGTATAAGCTGTGCATAGTTGCTAGCTGAGCGAATGAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCTGGCTCTGTATAAGCTGTGCATAGTTGCTAGCTGAGCGAATGAG  677

seq1  CGGCAAGGCTAACTCACACAGACAAGGCACAAAGCCCTGGGTTTGCTTCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAGGCTAACTCACACAGACAAGGCACAAAGCCCTGGGTTTGCTTCC  727

seq1  CAATTCTGCAGGAACGACAGCATGGTGGTACAGACTTGTAATCGCAGCCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGCAGGAACGACAGCATGGTGGTACAGACTTGTAATCGCAGCCC  777

seq1  TTGGGAGGGGAAAGCAAAGGGTTCAGAAATGGAAAGTTATCATTGTGGAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGGGAAAGCAAAGGGTTCAGAAATGGAAAGTTATCATTGTGGAA  827

seq1  CCTGAGGCCAGCCTAGGCTACAGGAGACCCCGTGTCTAAACAAACAAGGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGCCAGCCTAGGCTACAGGAGACCCCGTGTCTAAACAAACAAGGT  877

seq1  CCAGGGAGACGCTTGGTTGGGCAGTGTTTGCCACACAAGCATGAGGGACC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGACGCTTGGTTGGGCAGTGTTTGCCACACAAGCATGAGGGACC  927

seq1  TGAATTCAGATCCCTATCACATTGATTTTAAGAAGGGGGTTAAAAAGAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAGATCCCTATCACATTGATTTTAAGAAGGGGGTTAAAAAGAAA  977

seq1  GCTGGCGTTTCGTGTGTCTTGTGGTGTCGTAGGTGTGGGGTTTGGTGTGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCGTTTCGTGTGTCTTGTGGTGTCGTAGGTGTGGGGTTTGGTGTGG  1027

seq1  TGCCCTGTGTTGCAATCCCAGCATCGGGGAGGTAGGCAAACAAGGATTCC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTGTTGCAATCCCAGCATCGGGGAGGTAGGCAAACAAGGATTCC  1077

seq1  CGCACCTCACTGGCCTGTAGTCCTACAGAATCTGTGAGCTTCAGGTTCGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCTCACTGGCCTGTAGTCCTACAGAATCTGTGAGCTTCAGGTTCGA  1127

seq1  TGAAAGCCCTGAGGCTAAATAAGGTAAAGAATTC  1175
      ||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCCTGAGGCTAAATAAGGTAAAGAATTC  1161