BAC Information

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BAC

Clone NameB6Ng01-312D05
Chromosome18 (Build37)10 (Build37)
Map Location 43,504,630 - 43,505,45688,342,670 - 88,343,166
singlet/doubletsingletsinglet
Overlap geneDpysl3
Upstream genePou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a
Downstream geneLOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312D05.bB6Ng01-312D05.g
ACCGA103728GA103729
length833243
definitionB6Ng01-312D05.b B6Ng01-312D05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,504,630 - 43,505,456)(88,342,670 - 88,343,166)
sequence
gaattcattcatcttattcatgtatttaaaatacacaaacctagaggcaa
agctgatattaaaatgtgagttatcagaatttgaaactgtagcatctcat
taggccagaatagagttggaagtctgcacctggactaacagagcccagat
gagtttgatagagaaggcaggtgaccagaggctgggggatctggccctaa
accttaagctacatggccttaatccagttacttaaatcagagcacagcat
ggagcagatgctcaacaccttttgttgaatagaaataaaggaaagattga
accagccaccaagtcaggcaaggagatgttcccagggagtgggtctgaaa
gaggtgaagaagtgtcattttactggtaatgtagataaaacatggacact
cttatcaaatgatctgccttttaataataatagtaaaaagaaaccagtta
aaaatttaaagattcgactgtattgctccaaatgtggagatgaatatttg
cccaacatataaattttattcttttcccccttgaatgcattttagcccag
agcatacagatattattttcccaaatgttggctgaaagtcatctaagaac
tttctccactttgtttctcttattttaggagcaggcacggatgctggaaa
tggggataaccggcccagaaggccacgttctgagcagaccggaagaggtg
agttttgttgggggttggagggaggggcatgcagcaaaaagccatgatgg
catttgagggttgtttttcatcagtgttttctgggaggactggttgtcac
agtcctaagcgtggtcatttacctttatagcag
tccgcggaattctcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttcttcttcttcttcttcctcctcctcctcct
cctcctcctcctcttccactacctcttcctcttcctcctcctcctcctct
ccctctccctctccctcttcctcttcctcttcctcttcctcttcttcttc
ttcttcctcttcttcttcttcttcttcttcttcttcttcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_43504630_43505456
seq2: B6Ng01-312D05.b_46_878 (reverse)

seq1  CTGCTATAAA-GTGAGTGA-CACGC-TAGGACTGTGACAACCAGT-CTCC  46
      |||||||||| || | ||| ||||| ||||||||||||||||||| ||||
seq2  CTGCTATAAAGGTAAATGACCACGCTTAGGACTGTGACAACCAGTCCTCC  50

seq1  CAGAAAACACTGATG-AAAACAACCCTC-ACTGCCATCTTGGCTTTTTGC  94
      ||||||||||||||| |||||||||||| | ||||||| |||||||||||
seq2  CAGAAAACACTGATGAAAAACAACCCTCAAATGCCATCATGGCTTTTTGC  100

seq1  TGCATGCCCCTCCCTCCAACCCCCAACAAAACTCACCTCTTCCGGTCTGC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCCCCTCCCTCCAACCCCCAACAAAACTCACCTCTTCCGGTCTGC  150

seq1  TCAGAACGTGGCCTTCTGGGCCGGTTATCCCCATTTCCAGCATCCGTGCC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACGTGGCCTTCTGGGCCGGTTATCCCCATTTCCAGCATCCGTGCC  200

seq1  TGCTCCTAAAATAAGAGAAACAAAGTGGAGAAAGTTCTTAGATGACTTTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTAAAATAAGAGAAACAAAGTGGAGAAAGTTCTTAGATGACTTTC  250

seq1  AGCCAACATTTGGGAAAATAATATCTGTATGCTCTGGGCTAAAATGCATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACATTTGGGAAAATAATATCTGTATGCTCTGGGCTAAAATGCATT  300

seq1  CAAGGGGGAAAAGAATAAAATTTATATGTTGGGCAAATATTCATCTCCAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGGAAAAGAATAAAATTTATATGTTGGGCAAATATTCATCTCCAC  350

seq1  ATTTGGAGCAATACAGTCGAATCTTTAAATTTTTAACTGGTTTCTTTTTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGCAATACAGTCGAATCTTTAAATTTTTAACTGGTTTCTTTTTA  400

seq1  CTATTATTATTAAAAGGCAGATCATTTGATAAGAGTGTCCATGTTTTATC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTATTAAAAGGCAGATCATTTGATAAGAGTGTCCATGTTTTATC  450

seq1  TACATTACCAGTAAAATGACACTTCTTCACCTCTTTCAGACCCACTCCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTACCAGTAAAATGACACTTCTTCACCTCTTTCAGACCCACTCCCT  500

seq1  GGGAACATCTCCTTGCCTGACTTGGTGGCTGGTTCAATCTTTCCTTTATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACATCTCCTTGCCTGACTTGGTGGCTGGTTCAATCTTTCCTTTATT  550

seq1  TCTATTCAACAAAAGGTGTTGAGCATCTGCTCCATGCTGTGCTCTGATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCAACAAAAGGTGTTGAGCATCTGCTCCATGCTGTGCTCTGATTT  600

seq1  AAGTAACTGGATTAAGGCCATGTAGCTTAAGGTTTAGGGCCAGATCCCCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACTGGATTAAGGCCATGTAGCTTAAGGTTTAGGGCCAGATCCCCC  650

seq1  AGCCTCTGGTCACCTGCCTTCTCTATCAAACTCATCTGGGCTCTGTTAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGGTCACCTGCCTTCTCTATCAAACTCATCTGGGCTCTGTTAGT  700

seq1  CCAGGTGCAGACTTCCAACTCTATTCTGGCCTAATGAGATGCTACAGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGCAGACTTCCAACTCTATTCTGGCCTAATGAGATGCTACAGTTT  750

seq1  CAAATTCTGATAACTCACATTTTAATATCAGCTTTGCCTCTAGGTTTGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTGATAACTCACATTTTAATATCAGCTTTGCCTCTAGGTTTGTG  800

seq1  TATTTTAAATACATGAATAAGATGAATGAATTC  827
      |||||||||||||||||||||||||||||||||
seq2  TATTTTAAATACATGAATAAGATGAATGAATTC  833

seq1: chr10_88342670_88343166
seq2: B6Ng01-312D05.g_90_303 (reverse)

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAG  50

seq1  AAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAG  100
      ||||||| ||||| ||||| ||||| |||                     
seq2  AAGAGGAAGAGGAAGAGGAAGAGGAAGAG---------------------  79

seq1  GAGGAGGAGGAAGAGGAGGAGGAGAAGGAGAAGGAGAAGAAGGAGAAGAG  150
                          ||||| ||||| |||               
seq2  --------------------GGAGAGGGAGAGGGA---------------  94

seq1  GAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAAGGAGAAGGA  200
               |||||||||||||||||||||||                 |
seq2  ---------GAGGAGGAGGAGGAGGAAGAGGA-----------------A  118

seq1  GAAGAAGGAGAAGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGA  250
      || | ||  ||||||||||||||||||||||||||| |||| || || ||
seq2  GAGGTAGTGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGA  168

seq1  AGAAGAATAAGAATAAGAATAAGAAGAAGAAGAAGAAGAAGAAGAAGGAA  300
      ||||||| ||||| ||||| ||||||||||||||||||||||||||    
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA----  214

seq1  GAAGAAGGAAGAAGAAGGAAGAAGAAGGAAGAAGAAGGAGGAGAAAGAGG  350
                                                        
seq2  --------------------------------------------------  214

seq1  AGAAGGAAGAAGAAGGAAGAAGAAGGAAGAAGAAGAAGAAGGAAGAAGAA  400
                                                        
seq2  --------------------------------------------------  214

seq1  GAAGAAGAAAAAGAAGGAAGAAGGAAGAAGAAGGAAGAAGGAAGAAGAAG  450
                                                        
seq2  --------------------------------------------------  214

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAA  497
                                                     
seq2  -----------------------------------------------  214