BAC Information

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BAC

Clone NameB6Ng01-312E04
Chromosome10 (Build37)
Map Location 100,706,213 - 100,845,049
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream geneMgat4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312E04.bB6Ng01-312E04.g
ACCGA103774GA103775
length1,1881,108
definitionB6Ng01-312E04.b B6Ng01-312E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,706,213 - 100,707,417)(100,843,932 - 100,845,049)
sequence
gaattcatgttttactggtactggagaagagtatatgaatgaaattatga
gaagccaaactccaaaacaaaagaactggtaaataaattggcaaatctga
gagaatctctagaaagatagcaagatgatattgtagaaaaaaacctgtca
cttcaatcaagacaggaaccacataaggagaatgttacataaagttatat
aaatctagttagctggttaaacaggtgccttatgcaggtgtgagaaatac
ctcctgctggcttattaaggatactttcatggtaagaaatacttctcact
acctacagtaataatcaattttccacattataaaaaataaaactttagtc
aacgtatgttgagctactattgcattattaattttatgcagaatgtaaga
gaattcagctttagaaacaaaattacagtttcttagtgccattcactcac
agatctcacgttcaaacaattctttgttcaggggtttctctctgcctagg
attctctttttacctggatttctatattcatggtctcttgcacctttttt
ctttcaggatcatctcaaaggttacctttgtttatttttaatttttaaaa
atttaatgaatgaatgaatgaatgaatgaatgagtttttctcgactacag
tagatctctgctacatttttgcctactcaacttacaagagtgtttgatgc
tacaacagtacttgatcctactatagttaatttctctctcttcacaatcc
cagaaagtattagctattcttgtgaaaatgtacttaaatggtaaatattg
ttttcctgttagtgattgtggttctttttttttttttttttttctcttgc
catactgagaattgaaccaagggtcttgcccatcataggcgagcatgtgt
cccttaatcacatacctaatgacagtctgtagaatttttgagaacacaat
gagtcataactgctaattattatccctaggatcttatgatgccacccaat
tgtccacaagggccagatcaatctgtatgcatatttttattttcttttcc
agttatatctacatgatagtatactcattacttatgacacttacatatat
ggacaatacatttcatcattcacacggtaggaaacgaactgtacttactg
actatccacagcagcataactggtccttaggaaatatc
gaattcatctgcctagagtcataaaacaaattaaatttatccaataaaat
tctagatgaagttcaaaatgatgcaaaataaatatgcatattatgtcaag
gctatattaattgcatgcaatacagacagcattatttaaaaggaacacaa
aagatttttttaattaaaaatcgtattagagtaattttaaataacatgaa
atgtcaaggaatagtaaggaaatatgctttgtgactttcaatttgtggtg
tcagtttgtgacataaaaaactctcacaggcatctaaacattttcattca
gcttttttgttttatttattatattgtgtacatgtttatcaagttctgca
atttgttatcttttcagaaccatgtcttttttgaaccagtatacagaaaa
attcaattttttatataccaggtattttttaaagtaaaatttacatgaag
tattttatacttctgttctaagaaaaaatacatatgttttaatttttttc
tccagtgacattaaaaaatgaacagatttaaatttcaaaacataaacact
agagacccctgaagtactgcacacttgacctctttattttatttcattca
gtgtagtgtgtctatcaactagttcttctctacttgttagtgagaccaac
aaacaggaagttatgtgtcagaaacaaaatgttgagagagagagagctca
acaaatttccaacaaacatgaacttatgtgtcagaaacaagttaagaggt
tgagaaagagagctcaatggatcatgtactcaatttatttctggttatag
acattcccagatttctctctgcttatcttgaaaagaaaaaagaaaaatag
aaaaggggttgaagggaaccacttggaacatttcctgagaaagtattttc
catgaaaaagactctcattctgaaatatccatgtaaagtgagtgttctaa
cacagctgattaagttacactgtttatggtgtatctaaatatgggtagtg
tcttgaaagacaatgctcctcacatgctgtagtattgcatattattacac
acttgatggaattgttaggaggtttaaaaatgtggtctagctggagagtg
cgtcgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100706213_100707417
seq2: B6Ng01-312E04.b_44_1231

seq1  GAATTCATGTTTTACTGGTACTGGAGAAGAGTATATGAATGAAATTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTTTACTGGTACTGGAGAAGAGTATATGAATGAAATTATGA  50

seq1  GAAGCCAAACTCCAAAACAAAAGAACTGGTAAATAAATTGGCAAATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAAACTCCAAAACAAAAGAACTGGTAAATAAATTGGCAAATCTGA  100

seq1  GAGAATCTCTAGAAAGATAGCAAGATGATATTGTAGAAAAAAACCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTCTAGAAAGATAGCAAGATGATATTGTAGAAAAAAACCTGTCA  150

seq1  CTTCAATCAAGACAGGAACCACATAAGGAGAATGTTACATAAAGTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATCAAGACAGGAACCACATAAGGAGAATGTTACATAAAGTTATAT  200

seq1  AAATCTAGTTAGCTGGTTAAACAGGTGCCTTATGCAGGTGTGAGAAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGTTAGCTGGTTAAACAGGTGCCTTATGCAGGTGTGAGAAATAC  250

seq1  CTCCTGCTGGCTTATTAAGGATACTTTCATGGTAAGAAATACTTCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTGGCTTATTAAGGATACTTTCATGGTAAGAAATACTTCTCACT  300

seq1  ACCTACAGTAATAATCAATTTTCCACATTATAAAAAATAAAACTTTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAGTAATAATCAATTTTCCACATTATAAAAAATAAAACTTTAGTC  350

seq1  AACGTATGTTGAGCTACTATTGCATTATTAATTTTATGCAGAATGTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTATGTTGAGCTACTATTGCATTATTAATTTTATGCAGAATGTAAGA  400

seq1  GAATTCAGCTTTAGAAACAAAATTACAGTTTCTTAGTGCCATTCACTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTTAGAAACAAAATTACAGTTTCTTAGTGCCATTCACTCAC  450

seq1  AGATCTCACGTTCAAACAATTCTTTGTTCAGGGGTTTCTCTCTGCCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCACGTTCAAACAATTCTTTGTTCAGGGGTTTCTCTCTGCCTAGG  500

seq1  ATTCTCTTTTTACCTGGATTTCTATATTCATGGTCTCTTGCACCTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTTTACCTGGATTTCTATATTCATGGTCTCTTGCACCTTTTTT  550

seq1  CTTTCAGGATCATCTCAAAGGTTACCTTTGTTTATTTTTAATTTTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGATCATCTCAAAGGTTACCTTTGTTTATTTTTAATTTTTAAAA  600

seq1  ATTTAATGAATGAATGAATGAATGAATGAATGAGTTTTTCTCGACTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGAATGAATGAATGAATGAATGAATGAGTTTTTCTCGACTACAG  650

seq1  TAGATCTCTGCTACATTTTTGCCTACTCAACTTACAAGAGTGTTTGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCTGCTACATTTTTGCCTACTCAACTTACAAGAGTGTTTGATGC  700

seq1  TACAACAGTACTTGATCCTACTATAGTTAATTTCTCTCTCTTCACAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGTACTTGATCCTACTATAGTTAATTTCTCTCTCTTCACAATCC  750

seq1  CAGAAAGTATTAGCTATTCTTGTGAAAATGTACTTAAATGGTAAATATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTATTAGCTATTCTTGTGAAAATGTACTTAAATGGTAAATATTG  800

seq1  TTTTCCTGTTAGTGATTGTGGTTC--TTTTTTTTTTTTTTTTTCTCTTGC  848
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TTTTCCTGTTAGTGATTGTGGTTCTTTTTTTTTTTTTTTTTTTCTCTTGC  850

seq1  CATACTGAGAATTGAACCAAGGGTCTTGCCCATCATAGGCGAGCATGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGAGAATTGAACCAAGGGTCTTGCCCATCATAGGCGAGCATGTGT  900

seq1  CCCTTAATCACATACCTAATGACAGTCTGTAGAATTTTTGAGAACACAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCTTAATCACATACCTAATGACAGTCTGTAGAATTTTTGAGAACAC-AA  949

seq1  TGAGTCATAACTGCTAATTA-TATCCCTAGGATCTTATGATGCCACCCAA  997
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAGTCATAACTGCTAATTATTATCCCTAGGATCTTATGATGCCACCCAA  999

seq1  TTGTCCACAAAGGGCCAGATCAATCTGTATGCA-ATATTTTATTTCTTTT  1046
      |||||||| |||||||||||||||||||||||| || |||  ||||||||
seq2  TTGTCCAC-AAGGGCCAGATCAATCTGTATGCATATTTTTATTTTCTTTT  1048

seq1  CCCAAGTTAATAATCTACAATGAATAGTATACTCAATTACTTATGAACAC  1096
      ||  |||||   |||||| ||| ||||||||||| |||||||||| ||||
seq2  CC--AGTTA--TATCTAC-ATG-ATAGTATACTC-ATTACTTATG-ACAC  1090

seq1  -TACATATATGGAACAATACATTCATTCATTTCCAACAACAGTAGGAAAC  1145
       ||||||||||| ||||||||||   |||||  |    || |||||||||
seq2  TTACATATATGG-ACAATACATTTCATCATTCAC----ACGGTAGGAAAC  1135

seq1  AGAACATTGTACATAAACTGAGCTAATCCACAGCAAAGCATAACT-GTGC  1194
       ||||  ||||| |  ||||| || |||||||||  ||||||||| || |
seq2  -GAAC--TGTACTT--ACTGA-CT-ATCCACAGC--AGCATAACTGGTCC  1176

seq1  TTAGG-AATATC  1205
      ||||| ||||||
seq2  TTAGGAAATATC  1188

seq1: chr10_100843932_100845049
seq2: B6Ng01-312E04.g_65_1172 (reverse)

seq1  TTACGACGCACTTCCTCCAGCTAGACCACATTTTTTAAAACCTCCCTAAA  50
      ||||||||||||  |||||||||||||||||||||  ||||||||   ||
seq2  TTACGACGCACT--CTCCAGCTAGACCACATTTTT--AAACCTCC--TAA  44

seq1  CAATTCCATCAAGTGTTGGTAAT-ATATGCAAATACTACAGCATGTGAGG  99
      ||||||||||||||||  ||||| |||||| |||||||||||||||||||
seq2  CAATTCCATCAAGTGT--GTAATAATATGC-AATACTACAGCATGTGAGG  91

seq1  AGCATTGTCTTTCAAGACACTACCCATATTTAAGATACACCATAAACAGT  149
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCATTGTCTTTCAAGACACTACCCATATTT-AGATACACCATAAACAGT  140

seq1  GTAACTTAATCAGCTGTGTTAGAACACTCACTTTACATGGATATTTCAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTAATCAGCTGTGTTAGAACACTCACTTTACATGGATATTTCAGA  190

seq1  ATGAGAGTCTTTTTCATGGAAAATACTTTCTCAGGAAATGTTCCAAGTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGTCTTTTTCATGGAAAATACTTTCTCAGGAAATGTTCCAAGTGG  240

seq1  TTCCCTTCAACCCCCTTTTCTATTTTTCTTTTTTCTTTTCAAGATAAGCA  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCAA-CCCCTTTTCTATTTTTCTTTTTTCTTTTCAAGATAAGCA  289

seq1  GAGAGAAATCTGGGAATGTCTATAACCAGAAATAAATTGAGTACATGATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATCTGGGAATGTCTATAACCAGAAATAAATTGAGTACATGATC  339

seq1  CATTGAGCTCTCTTTCTCAACCTCTTAACTTGTTTCTGACACATAAGTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCTCTCTTTCTCAACCTCTTAACTTGTTTCTGACACATAAGTTC  389

seq1  ATGTTTGTTGGAAATTTGTTGAGCTCTCTCTCTCTCAACATTTTGTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTTGGAAATTTGTTGAGCTCTCTCTCTCTCAACATTTTGTTTCT  439

seq1  GACACATAACTTCCTGTTTGTTGGTCTCACTAACAAGTAGAGAAGAACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATAACTTCCTGTTTGTTGGTCTCACTAACAAGTAGAGAAGAACTA  489

seq1  GTTGATAGACACACTACACTGAATGAAATAAAATAAAGAGGTCAAGTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAGACACACTACACTGAATGAAATAAAATAAAGAGGTCAAGTGTG  539

seq1  CAGTACTTCAGGGGTCTCTAGTGTTTATGTTTTGAAATTTAAATCTGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTTCAGGGGTCTCTAGTGTTTATGTTTTGAAATTTAAATCTGTTC  589

seq1  ATTTTTTAATGTCACTGGAGAAAAAAATTAAAACATATGTATTTTTTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAATGTCACTGGAGAAAAAAATTAAAACATATGTATTTTTTCTT  639

seq1  AGAACAGAAGTATAAAATACTTCATGTAAATTTTACTTTAAAAAATACCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAAGTATAAAATACTTCATGTAAATTTTACTTTAAAAAATACCT  689

seq1  GGTATATAAAAAATTGAATTTTTCTGTATACTGGTTCAAAAAAGACATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATAAAAAATTGAATTTTTCTGTATACTGGTTCAAAAAAGACATGG  739

seq1  TTCTGAAAAGATAACAAATTGCAGAACTTGATAAACATGTACACAATATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAAGATAACAAATTGCAGAACTTGATAAACATGTACACAATATA  789

seq1  ATAAATAAAACAAAAAAGCTGAATGAAAATGTTTAGATGCCTGTGAGAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAACAAAAAAGCTGAATGAAAATGTTTAGATGCCTGTGAGAGT  839

seq1  TTTTTATGTCACAAACTGACACCACAAATTGAAAGTCACAAAGCATATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTCACAAACTGACACCACAAATTGAAAGTCACAAAGCATATTT  889

seq1  CCTTACTATTCCTTGACATTTCATGTTATTTAAAATTACTCTAATACGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTATTCCTTGACATTTCATGTTATTTAAAATTACTCTAATACGAT  939

seq1  TTTTAATTAAAAAAATCTTTTGTGTTCCTTTTAAATAATGCTGTCTGTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTAAAAAAATCTTTTGTGTTCCTTTTAAATAATGCTGTCTGTAT  989

seq1  TGCATGCAATTAATATAGCCTTGACATAATATGCATATTTATTTTGCATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCAATTAATATAGCCTTGACATAATATGCATATTTATTTTGCATC  1039

seq1  ATTTTGAACTTCATCTAGAATTTTATTGGATAAATTTAATTTGTTTTATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAACTTCATCTAGAATTTTATTGGATAAATTTAATTTGTTTTATG  1089

seq1  ACTCTAGGCAGATGAATTC  1118
      |||||||||||||||||||
seq2  ACTCTAGGCAGATGAATTC  1108