BAC Information

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BAC

Clone NameB6Ng01-312G09
Chromosome10 (Build37)
Map Location 82,169,783 - 82,294,695
singlet/doubletdoublet
Overlap geneHcfc2, Nfyb, 1700028I16Rik
Upstream geneLOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2
Downstream geneTxnrd1, Eid3, EG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312G09.bB6Ng01-312G09.g
ACCGA103878GA103879
length1,0051,053
definitionB6Ng01-312G09.b B6Ng01-312G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,293,678 - 82,294,695)(82,169,783 - 82,170,838)
sequence
gaattcagtttttgtttttgtttttgttttttttactgcttttgcctatg
aattttacagcttttttttttttcatctctagggtatagtctaccagggc
tagtcatttttatctagtgtaatgggaggttctgccttctctttgcagtg
tgtgtgtgtgtgtgtattactagttaattttgtgtgacttgttgaaaaaa
gtcctctgttggtatttttttacatccatggtgaaaaccaattgaccata
agtgaagttattcatcataggcacaccatggcttctcttaggctgagttt
acaccaaatcaggtaatttccccaaacaggaagccagacttccatctttc
attttatgttctttgaagtatatgttaggtcatgaatatgtaataattat
tataaaagcaattttaaagccaattaattaaaactaaactctactaccca
cagccaaacattcagcagagcttggggaatcctggacaagggggcgggga
gggggagacggtaggcttcacaggggtcaagaacttatatcacatcacaa
gaaaacccacagaatcaactagcctgggctcacaggggctcacagggatt
gaaccaacagccagggaaccatcaacatccagggagccagagcctgaatg
gctttttacaccaaatattaaaaatacagagaaagggccagggagacagt
tcaacggagagcactcacctagcacacgcaagaatctgagctcagttctg
gttactgtaaaaagcaaatgtggatggggttggaagactggatggatgga
gagtggacagagagacagataaaaatgcaaatgacatagaaaattccctt
gacatttggatactggtgatgtgactttaaatgcttatgggaaaaaattt
gtgtaaagtgttaattgcccccccaaaaaataaaataaataaaagcaaaa
ataaaaaaaagctgggcgtgcatggcgtatgcctttatccagcactggga
gcaga
gaattcatttcctggaagaatatgtatgctcttaaccattgagccatctc
tccagcccctaaactttgaaatcttctgatcagaaatgttttgctttctc
tccttgtacttgagtaaaatattaataggaaattgaatggattggtacaa
gtgacattttggaattgggagatagctcaacaggctaagctcttgccagt
tggaggaccttgggtttggatgtccagaacctacataaaaaatatcatgt
aattccagctgatagcaggcagaaacagaaaaactctgggcaagagtttt
tcttgccaaaaccaaccaagtttcaggttcaggaacagactgcctcagtt
gtacgaggcagagagtgactgaggggaacccagtgccattctcctgttta
tgcatgtgcacatatatgtgcccgcatgtatgtgcccacatgtacatgca
tttgcagagaaaacaaaagtgtgttaaaaaataggtcacagattaatgaa
agcttttcaagaaaagaagctggttagaacaaagttagtgtcggtttcta
agttaaagacacgttttaggatagtgctgtgacattttgtagtgtgccaa
gaaagctgcgaaggaagcagtgcttattccagatagcagtggcatcaaat
attggccaaaatcgtgaccataataactgttatctagtgctgtgtaataa
actaatgatacaaaatagtaacttgtattgtgttcacagacactgtaagt
aagatgattagggcacagaagacatggctaaaccctttagtgagaaacct
taaatggtcatccccacatctgatagttaactgaggtaactgaaaggata
gattcaactgggctatcacctaacaagcctctacaaatggcttttttttt
tcttttttttcttttttcttggagaacaggatcttcaaatagaacctggc
tggcttggactatgtagctaagaagtaaccctgaacttcttgtcaccctg
tgtaccttggtgactgctgagaatatacgcatgtgtcactgtgcctagat
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_82293678_82294695
seq2: B6Ng01-312G09.b_47_1051 (reverse)

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATACGCCA-CCACGCCCAGCT  49
      |||| ||||| ||||||||   |||||||||||||||  |||||||||| 
seq2  TCTG-CTCCC-AGTGCTGG--ATAAAGGCATACGCCATGCACGCCCAGC-  45

seq1  TTTTTTTTTTTTTTTTTGCTTTTTATTTTTATTTTTATTTTTTTGGGGGG  99
         |||||||| ||||||||||   | ||||||||   ||||||||||||
seq2  ---TTTTTTTTATTTTTGCTTT---TATTTATTTT--ATTTTTTGGGGGG  87

seq1  GCAATTAACACTTTAACACAAATTTTTTCCCATAAGCATTTAAAGTCACA  149
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCAATTAACACTTT-ACACAAATTTTTTCCCATAAGCATTTAAAGTCACA  136

seq1  TCACCAGTATCCAAATGTCAAGGGAA-TTTCTATGTCATTTTGCATTTTT  198
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  TCACCAGTATCCAAATGTCAAGGGAATTTTCTATGTCA-TTTGCATTTTT  185

seq1  ATCTGTCTCTCTGTCCACTCTCCATCCATCCAGTCTTCCAACCCCATCCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTCTCTGTCCACTCTCCATCCATCCAGTCTTCCAACCCCATCCA  235

seq1  CATTTGCTTTTTACAGTAACCAGAACTGAGCTCAGATTCTTGCGTGTGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTTTTTACAGTAACCAGAACTGAGCTCAGATTCTTGCGTGTGCT  285

seq1  AGGTGAGTGCTCTCCGTTGAACTGTCTCCCTGGCCCTTTCTCTGTATTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGTGCTCTCCGTTGAACTGTCTCCCTGGCCCTTTCTCTGTATTTT  335

seq1  TAATATTTGGTGTAAAAAGCCATTCAGGCTCTGGCTCCCTGGATGTTGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTGGTGTAAAAAGCCATTCAGGCTCTGGCTCCCTGGATGTTGAT  385

seq1  GGTTCCCTGGCTGTTGGTTCAATCCCTGTGAGCCCCTGTGAGCCCAGGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCTGGCTGTTGGTTCAATCCCTGTGAGCCCCTGTGAGCCCAGGCT  435

seq1  AGTTGATTCTGTGGGTTTTCTTGTGATGTGATATAAGTTCTTGACCCCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTCTGTGGGTTTTCTTGTGATGTGATATAAGTTCTTGACCCCTG  485

seq1  TGAAGCCTACCGTCTCCCCCTCCCCGCCCCCTTGTCCAGGATTCCCCAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCTACCGTCTCCCCCTCCCCGCCCCCTTGTCCAGGATTCCCCAAG  535

seq1  CTCTGCTGAATGTTTGGCTGTGGGTAGTAGAGTTTAGTTTTAATTAATTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGAATGTTTGGCTGTGGGTAGTAGAGTTTAGTTTTAATTAATTG  585

seq1  GCTTTAAAATTGCTTTTATAATAATTATTACATATTCATGACCTAACATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAATTGCTTTTATAATAATTATTACATATTCATGACCTAACATA  635

seq1  TACTTCAAAGAACATAAAATGAAAGATGGAAGTCTGGCTTCCTGTTTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAAGAACATAAAATGAAAGATGGAAGTCTGGCTTCCTGTTTGGG  685

seq1  GAAATTACCTGATTTGGTGTAAACTCAGCCTAAGAGAAGCCATGGTGTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACCTGATTTGGTGTAAACTCAGCCTAAGAGAAGCCATGGTGTGC  735

seq1  CTATGATGAATAACTTCACTTATGGTCAATTGGTTTTCACCATGGATGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATGAATAACTTCACTTATGGTCAATTGGTTTTCACCATGGATGTA  785

seq1  AAAAAATACCAACAGAGGACTTTTTTCAACAAGTCACACAAAATTAACTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATACCAACAGAGGACTTTTTTCAACAAGTCACACAAAATTAACTA  835

seq1  GTAATACACACACACACACACACTGCAAAGAGAAGGCAGAACCTCCCATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACACACACACACACACACTGCAAAGAGAAGGCAGAACCTCCCATT  885

seq1  ACACTAGATAAAAATGACTAGCCCTGGTAGACTATACCCTAGAGATGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGATAAAAATGACTAGCCCTGGTAGACTATACCCTAGAGATGAAA  935

seq1  AAAAAAAAAGCTGTAAAATTCATAGGCAAAAGCAGTAAAAAAAACAAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGCTGTAAAATTCATAGGCAAAAGCAGTAAAAAAAACAAAAA  985

seq1  CAAAAACAAAAACTGAATTC  1018
      ||||||||||||||||||||
seq2  CAAAAACAAAAACTGAATTC  1005

seq1: chr10_82169783_82170838
seq2: B6Ng01-312G09.g_63_1115

seq1  GAATTCATTTCCTGGAAGAATATGTATGCTCTTAACCATTGAGCCATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTGGAAGAATATGTATGCTCTTAACCATTGAGCCATCTC  50

seq1  TCCAGCCCCTAAACTTTGAAATCTTCTGATCAGAAATGTTTTGCTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCCTAAACTTTGAAATCTTCTGATCAGAAATGTTTTGCTTTCTC  100

seq1  TCCTTGTACTTGAGTAAAATATTAATAGGAAATTGAATGGATTGGTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTACTTGAGTAAAATATTAATAGGAAATTGAATGGATTGGTACAA  150

seq1  GTGACATTTTGGAATTGGGAGATAGCTCAACAGGCTAAGCTCTTGCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATTTTGGAATTGGGAGATAGCTCAACAGGCTAAGCTCTTGCCAGT  200

seq1  TGGAGGACCTTGGGTTTGGATGTCCAGAACCTACATAAAAAATATCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACCTTGGGTTTGGATGTCCAGAACCTACATAAAAAATATCATGT  250

seq1  AATTCCAGCTGATAGCAGGCAGAAACAGAAAAACTCTGGGCAAGAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGCTGATAGCAGGCAGAAACAGAAAAACTCTGGGCAAGAGTTTT  300

seq1  TCTTGCCAAAACCAACCAAGTTTCAGGTTCAGGAACAGACTGCCTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCAAAACCAACCAAGTTTCAGGTTCAGGAACAGACTGCCTCAGTT  350

seq1  GTACGAGGCAGAGAGTGACTGAGGGGAACCCAGTGCCATTCTCCTGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGAGGCAGAGAGTGACTGAGGGGAACCCAGTGCCATTCTCCTGTTTA  400

seq1  TGCATGTGCACATATATGTGCCCGCATGTATGTGCCCACATGTACATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGCACATATATGTGCCCGCATGTATGTGCCCACATGTACATGCA  450

seq1  TTTGCAGAGAAAACAAAAGTGTGTTAAAAAATAGGTCACAGATTAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAGAAAACAAAAGTGTGTTAAAAAATAGGTCACAGATTAATGAA  500

seq1  AGCTTTTCAAGAAAAGAAGCTGGTTAGAACAAAGTTAGTGTCGGTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCAAGAAAAGAAGCTGGTTAGAACAAAGTTAGTGTCGGTTTCTA  550

seq1  AGTTAAAGACACGTTTTAGGATAGTGCTGTGACATTTTGTAGTGTGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGACACGTTTTAGGATAGTGCTGTGACATTTTGTAGTGTGCCAA  600

seq1  GAAAGCTGCGAAGGAAGCAGTGCTTATTCCAGATAGCAGTGGCATCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGCGAAGGAAGCAGTGCTTATTCCAGATAGCAGTGGCATCAAAT  650

seq1  ATTGGCCAAAATCGTGACCATAATAACTGTTATCTAGTGCTGTGTAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCAAAATCGTGACCATAATAACTGTTATCTAGTGCTGTGTAATAA  700

seq1  ACTAATGATACAAAATAGTAACTTGTATTGTGTTCACAGACACTGTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGATACAAAATAGTAACTTGTATTGTGTTCACAGACACTGTAAGT  750

seq1  AAGATGATTAGGGCACAGAAGACATGGCTAAACCCTTTAGTGAGAAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATTAGGGCACAGAAGACATGGCTAAACCCTTTAGTGAGAAACCT  800

seq1  TAAATGGTCATCCCCACATCTGATAGTTAACTGAGGTAACTG-AAGGATA  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAATGGTCATCCCCACATCTGATAGTTAACTGAGGTAACTGAAAGGATA  850

seq1  GATTCAACTGGGCTATCACCTAACAAGCCTCTACAAATGGCTTTTTTTTT  899
      |||||||||||||||||||||||||||||||||||||||||    |||||
seq2  GATTCAACTGGGCTATCACCTAACAAGCCTCTACAAATGGC----TTTTT  896

seq1  TTTTTTTTTTTTTTTTTTTTTTTTGGAG-ACAGGATC-TCAAATAGAACC  947
      ||||| |||||||| |||||| |||||| |||||||| |||||||||| |
seq2  TTTTTCTTTTTTTTCTTTTTTCTTGGAGAACAGGATCTTCAAATAGAA-C  945

seq1  CTGGCTGGCTTTGGACTATGTAGCTAAG-AGTAACCTTGAACTTCTGGTC  996
      ||||||||| |||||||||||||||||| ||||||| ||||||||| |||
seq2  CTGGCTGGC-TTGGACTATGTAGCTAAGAAGTAACCCTGAACTTCTTGTC  994

seq1  ACCCTGTTGTACCTT-GTGACTGCTGAGATTATAGGCATGTGTCACTGTG  1045
      |||||| |||||||| ||||||||||||| |||| |||||||||||||||
seq2  ACCCTG-TGTACCTTGGTGACTGCTGAGAATATACGCATGTGTCACTGTG  1043

seq1  CTTGGGATGTG  1056
      | |  ||||||
seq2  CCT-AGATGTG  1053