BAC Information

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BAC

Clone NameB6Ng01-313C19
Chromosome10 (Build37)10 (Build37)
Map Location 85,185,035 - 85,186,04285,878,616 - 85,879,613
singlet/doubletsingletsinglet
Overlap geneLOC626878
Upstream genePolr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858
Downstream geneLOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313C19.bB6Ng01-313C19.g
ACCGA104461GA104462
length1,0241,105
definitionB6Ng01-313C19.b B6Ng01-313C19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,185,035 - 85,186,042)(85,878,616 - 85,879,613)
sequence
gaattcttaaaatcagtataccgagtcttgaaagaatccaatccagaacc
tagaatgacagcagaaccagaattgctagaggagaaaattgcacaaaggc
ttgaaggatgaagatgacagcacatagagtctgaatattctcaataaaca
tccagattctgatttattattaaatgatcaaagcaataacataaaagaga
atatgtgtctcattgtgttgagtttgaaattctaaaatatgtacatatgt
tgattcatcactcactggatacatattcagacttctaagaagcatcagac
ttgccttctaaaagggatggttctgaaactgcacatttattagagatgat
ggctatcttggaaatgcctttgcagactggagccgatgattctttaacat
gtgtgtccattataatgcactttgcccattagggcataaaaaatgttatt
tgttaccaacttacaggtcaggcagttatagagagctctcatgggagttc
aaaggaaatgctcatagaacaaatgggggatctaagatctcccaaagaga
gtttaaatcaagctttattgacttgaatttttaaaatgccaatgagacag
ataatacagctgctaaaaagccctagatcttagaaagcactgctgattta
gataaacataaacatgtgctaacctcagaacagaaggcagtaaatatgct
gcataggggaagagaatatgatctttttcaaacgggaaaagaaaaactgt
ggaatcattcaaaattaataaaacacagaggcgactggaagagacctcct
gaagatctgtactactgacaagaaaaaaaatcatgaagaccaacaaaaca
ggtaacttgttttgctgatccctctacatgggaactgtactcaaactggc
tgagatgtgaaaaagtctctagctatgacttcaggtaaggattgccaata
aatcttattggctacagaatctccagggtggattcatgccattctttgaa
atggcatggatgaaaatcatatga
gaattcagctcatggtaactgaggtactgatgtgttgactttgttgacct
atgtgctacttaagatggtgttctccttgtcctacggaatactctttgtc
ctccttgctctccttttccttttgagataaggcctcatacagtctacact
gccctcaaatttgagagacacccagcaattaccttgaccttctggtcctt
cagtctctacctcccaaatgtgaaattacaggcatacacatctcacacag
ttcatggtgctaaaggttgaacccagggatctgtgcacatcagtcaaagg
ctctatcagctaagccacatccccaaccctgcactccccattttgggatg
gataacagaatataagtttttccctatctcagactttttctgatctccaa
ttctaatacatattctatctcttactagaggaagttctatgttttcaagg
gcttatgtgatcctgtggttagactgggttaaatcggactctctgggaca
ctccatagcttcaggctcataactgtgatcatgcaatcacatctgcaatg
tccctttgggtaagatttctacaggttccaggaattagcaagaagacaca
tttaggggggttaagcaggaaaagatggtgagagagtagtggtttgattt
taaggacatttatgcagctccttgtaatatccaggctctggtatagatca
tacatatggctggaatcagatctgccaagaaagtctctactatttcctcc
tagatcagaaaggagtcccttttgttccaagaaagcacagggagcgatgt
atgtacacaagcacatgtgtgcatacatgtgcacacacagaggaatagaa
atcgaatgaactcaattttctgtaaggcctctggctatactctcaggagc
actggcacctgacaaggacgtcaagccaagtagatgacatgactggaagc
ctaggcattcatgtctccttactgataatgcattcgtgatgataatcata
agtgatgacagtatggaaggggtgatgcagctgtgattattgatatacgt
tgaggatatattaaggccaacgatcatggcaaaagagaaataaatttgag
ccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_85185035_85186042
seq2: B6Ng01-313C19.b_47_1058 (reverse)

seq1  CATCCATGACATTTCAAAGAATGGCATGAATCCACCCTGGAGATTCTGTA  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGCCATTTCAAAGAATGGCATGAATCCACCCTGGAGATTCTGTA  50

seq1  GCCAATAAGATTTGTTGGCA-----TTCCTGAAGTCATAGCTAGAGACTT  95
      ||||||||||||| ||||||     | |||||||||||||||||||||||
seq2  GCCAATAAGATTTATTGGCAATCCTTACCTGAAGTCATAGCTAGAGACTT  100

seq1  TTTCACATCTCAGCCAGTTTGAGTACAGTTCCCATGTAGAGGGATCAGCA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCTCAGCCAGTTTGAGTACAGTTCCCATGTAGAGGGATCAGCA  150

seq1  AAACAAGTTACCCGTTTTGTTGGTCTTCATGATTTTTTTTTCTTGTCAGT  195
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  AAACAAGTTACCTGTTTTGTTGGTCTTCATGA-TTTTTTTTCTTGTCAGT  199

seq1  AGGACAGATCTTCAGGAGGTCTCTTCCAGTGGCCTCTGTGTTTTATTAAT  245
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTACAGATCTTCAGGAGGTCTCTTCCAGTCGCCTCTGTGTTTTATTAAT  249

seq1  TTTGAAGGATTCCACAGTTTTTCTTTTCCCGTTTGAAAAAGATCATATTC  295
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGATTCCACAGTTTTTCTTTTCCCGTTTGAAAAAGATCATATTC  299

seq1  TGTTCCCCTATGCAGCATATTTACTGCCTTCTGTTCTGAGGTTAGCACAT  345
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCTATGCAGCATATTTACTGCCTTCTGTTCTGAGGTTAGCACAT  349

seq1  GTTTATGTTTATCTAAATCAGCAATGCTTTCTAAGATCTAGGGCTTTTTA  395
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTTATGTTTATCTAAATCAGCAGTGCTTTCTAAGATCTAGGGCTTTTTA  399

seq1  GCAGCTGTATTATCTGTCTCATTGGCATTTTAAAAATTCAAGTCAATAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTATTATCTGTCTCATTGGCATTTTAAAAATTCAAGTCAATAAA  449

seq1  GCTTGATTTAAACTCTCTTTGGGAGATCTTAGATCCCCCATTTGTTCTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTTAAACTCTCTTTGGGAGATCTTAGATCCCCCATTTGTTCTAT  499

seq1  GAGCATTTCCTTTGAACTCCCATGAGAGCTCTCTATAACTGCCTGACCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTCCTTTGAACTCCCATGAGAGCTCTCTATAACTGCCTGACCTG  549

seq1  TAAGTTGGTAACATATAACATTTTTTATGCCCTAATGGGCAAAGTGCATT  595
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGGTAACAAATAACATTTTTTATGCCCTAATGGGCAAAGTGCATT  599

seq1  ATAGTGGACACACATGTTAAAGAATCATCGGCTCCAGTCTGCAAAGGCAT  645
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGACACACATGTTAAAGAATCATCGGCTCCAGTCTGCAAAGGCAT  649

seq1  TTCCAAGATAGCCATCATCTCTAATAAATGTGCAGTTTCAGAACCATCCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGATAGCCATCATCTCTAATAAATGTGCAGTTTCAGAACCATCCC  699

seq1  TTTTAGAAGGCAAGTCTGATGCTTCTTAGAAGTCTGAATATGTATCCAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAGGCAAGTCTGATGCTTCTTAGAAGTCTGAATATGTATCCAGT  749

seq1  GAGTGATGAATCAACATATGTACGTATTTTAAAATTTCAAACTCAACACA  795
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  GAGTGATGAATCAACATATGTACATATTTTAGAATTTCAAACTCAACACA  799

seq1  ATGAGACACATATTCTCTTTTATGTTATTGCTTTGATCATTTAATAATAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACACATATTCTCTTTTATGTTATTGCTTTGATCATTTAATAATAA  849

seq1  ATCGGAATCTGGATGTTTATTGAGAATATTCAGACTCTATGTGCTGTCAT  895
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATCTGGATGTTTATTGAGAATATTCAGACTCTATGTGCTGTCAT  899

seq1  CTTCATCCTTCAAGCCTTTGTGCAATTTTCTCCTCTAGCAATTCTGGTTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCTTCAAGCCTTTGTGCAATTTTCTCCTCTAGCAATTCTGGTTC  949

seq1  TGCTCTCATTCTAGGTTCTGGATTGGATTCTTTCAAGACTCGGTATACTG  995
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCATTCTAGGTTCTGGATTGGATTCTTTCAAGACTCGGTATACTG  999

seq1  ATTTTAAGAATTC  1008
      |||||||||||||
seq2  ATTTTAAGAATTC  1012

seq1: chr10_85878616_85879613
seq2: B6Ng01-313C19.g_176_1171

seq1  CTCCTTTTCCTTTTGAGATAAGGCCTCATACAGTCTACACTGCCCTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCCTTTTGAGATAAGGCCTCATACAGTCTACACTGCCCTCAAA  50

seq1  TTTGAGAGACACCCAGCAATTACCTTGACCTTCTGGTCCTTCAGTCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGACACCCAGCAATTACCTTGACCTTCTGGTCCTTCAGTCTCTA  100

seq1  CCTCCCAAATGTGAAATTACAGGCATACACATCTCACACAGTTCATGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAATGTGAAATTACAGGCATACACATCTCACACAGTTCATGGTG  150

seq1  CTAAAGGTTGAACCCAGGGATCTGTGCACATCAGTCAAAGGCTCTATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGTTGAACCCAGGGATCTGTGCACATCAGTCAAAGGCTCTATCAG  200

seq1  CTAAGCCACATCCCCAACCCTGCACTCCCCATTTTGGGATGGATAACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCACATCCCCAACCCTGCACTCCCCATTTTGGGATGGATAACAGA  250

seq1  ATATAAGTTTTTCCCTATCTCAGACTTTTTCTGATCTCCAATTCTAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTTTTTCCCTATCTCAGACTTTTTCTGATCTCCAATTCTAATAC  300

seq1  ATATTCTATCTCTTACTAGAGGAAGTTCTATGTTTTCAAGGGCTTATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTATCTCTTACTAGAGGAAGTTCTATGTTTTCAAGGGCTTATGTG  350

seq1  ATCCTGTGGTTAGACTGGGTTAAATCGGACTCTCTGGGACACTCCATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGGTTAGACTGGGTTAAATCGGACTCTCTGGGACACTCCATAGC  400

seq1  TTCAGGCTCATAACTGTGATCATGCAATCACATCTGCAATGTCCCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTCATAACTGTGATCATGCAATCACATCTGCAATGTCCCTTTGG  450

seq1  GTAAGATTTCTACAGGTTCCAGGAATTAGCAAGAAGACACATTTAGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTTCTACAGGTTCCAGGAATTAGCAAGAAGACACATTTAGGGGG  500

seq1  GTTAAGCAGGAAAAGATGGTGAGAGAGTAGTGGTTTGATTTTAAGGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCAGGAAAAGATGGTGAGAGAGTAGTGGTTTGATTTTAAGGACAT  550

seq1  TTATGCAGCTCCTTGTAATATCCAGGCTCTGGTATAGATCATACATATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGCTCCTTGTAATATCCAGGCTCTGGTATAGATCATACATATGG  600

seq1  CTGGAATCAGATCTGCCAAGAAAGTCTCTACTATTTCCTCCTAGATCAG-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGGAATCAGATCTGCCAAGAAAGTCTCTACTATTTCCTCCTAGATCAGA  650

seq1  AAGGAGTCCCTTTTGTTCCAAGAAAGCACAGGGAGCGATGTATGTACACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTCCCTTTTGTTCCAAGAAAGCACAGGGAGCGATGTATGTACACA  700

seq1  AGCACATGTGTGCATACATGTGCACACACAGAGGAATAGAAATCGAATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGTGTGCATACATGTGCACACACAGAGGAATAGAAATCGAATGA  750

seq1  ACTCAATTTTCTGTAAGGCCTCTGGCTATACTCTCAGGAGCACTGGCACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTTTCTGTAAGGCCTCTGGCTATACTCTCAGGAGCACTGGCACC  800

seq1  TGACAAGGACGTCAAGCCAAGTAGATGACATGACTGGAAGCCTAGGCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGACGTCAAGCCAAGTAGATGACATGACTGGAAGCCTAGGCATT  850

seq1  CATGTCTCCTTACTGATAATTGCATTCGTGATGATAATCAT-AGTGATGA  898
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  CATGTCTCCTTACTGATAA-TGCATTCGTGATGATAATCATAAGTGATGA  899

seq1  CAGTATGGAAGGGGGTGATTGCAGCTGTGATTA-TGATAATACGTTGAAG  947
      |||||||||| ||||||| |||||||||||||| |||| |||||||| ||
seq2  CAGTATGGAA-GGGGTGA-TGCAGCTGTGATTATTGAT-ATACGTTG-AG  945

seq1  GATTATATT-AGGCCAACAGATCAATGGGAAAGAG-AATAAAATTGAGGC  995
      || |||||| |||||||| |||||  |  |||||| |||||| ||||| |
seq2  GA-TATATTAAGGCCAAC-GATCATGGCAAAAGAGAAATAAATTTGAGCC  993

seq1  TTG  998
      |||
seq2  TTG  996