BAC Information

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BAC

Clone NameB6Ng01-313M17
Chromosome10 (Build37)
Map Location 114,544,997 - 114,546,168
singlet/doubletsinglet
Overlap geneTph2
Upstream geneTrhde, 4930473D10Rik
Downstream geneTbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313M17.bB6Ng01-313M17.g
ACCGA104906GA104907
length1,1481,158
definitionB6Ng01-313M17.b B6Ng01-313M17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatatttcacgcactctctcgggcacacacaatatttcctcatct
attttcccaggctgtttcctgtgacttgcctttttctctgtgtttgctca
ggggaggtgtgctattaagtcagaggcagttcttccatctccagggagaa
gcttgacatcgttccaggcgaggccctgccttctattatttatggataaa
acactttacattgtaaaatagcagaccagccccatctaagacccatttat
gaagtaaactgaaccatctgcatttcagaaagacagagttggggtgctga
aagttagatgaccccccaaggtcacatgcaaaagtagaaactcccccagg
ggccttctctgtgtgtagtgctcactcccatggccacctgggtgcctagg
ctcacagccatgtgaaatggacaagctggcatgattttcacactcaccac
tgtgccaggcagcttcctggtgcattagctcatcaatttcacatctctct
ggcattagagagccctattagtctcgttttaaagatgatgacattgaaag
acggaagatgttgttatgattctgtccttggccagagtcgcatcttctcc
agccaggccttgatatgtaggcttctgagttcgttcctacattatcccct
tttaataagaaactttttagtttgatgtagccagattcttccattcccag
agtctaaacaggttgctctcccctcatctcacatgcaacctcagcaacgt
cctatagtatcagattaaccagaacacctcctccttcctcaggattctct
tgggaattttccatgcagtgaccaccatctttgtgcacagtggctataaa
ttcccactttgctttgttgtattagaaactgagcccaactatctcccatt
gcaaagcccattgtggaccaattatgataccaatgaaccagtttgcctta
ccattctttggcagatcataataatatttgtttgatgatatccagctgta
ttgatgagcctacattgggacccagtatgaagaggagacagtactgtact
gcctctctgctgttgctgtcctagatgccagctcagattcagaccagtca
ctttactttagatctcaggtctccctagttctactagaatggagcatc
gaattcagaggatatagaatgtatacagagttggggatttcataaaatgt
agtagttaatgcgaatcagtcactttctatttgtcttttcaggcagactc
aaccaatttctagaagttaaagttacacctttacaattagataaacatga
ctgtcttctacatatagtagaatatagtgtagaattttgagttttgtggc
atgtaattttctctcaaaaaggtacagaagatgagcagggcatggtggtg
tttacctgtgacttcagcactggaggcagaggcagttttatccattaccg
tgattaaaagttttcctgggtatagtagactgggctggcatgtgtggtct
caaatctgtccagctcttctgggatttaatgtctccattgagaaatgagg
tatatacttctaatgggtctgcatttatatgttacttagtcttttcccct
tacagcttttgattagtgtgtgcggagagggacttggcttcctgcatctg
gtgctctgtgtgctgcttgtaccttggtaggcatgacctttagtttgggg
agattttcttgaaaatgatttctgtgcttttgacttcctttcctttcctt
tcctttcctttcctttcctttcctttcctttcctttcctttcctttcctc
ccccccccacccccctctagacaggttatctctgcagccctggctgtctg
ttctttctgtagatcagaaagaacactctgtagatcagtctggcctcaga
ctcagaagtctgactgcctctgcctcccaggtgctagaattaaaggcgtg
tgccccatccctactacctggcctcctccttattacttttacatctgctc
ttttcatagtgttccaggttttcttggatttttgtgcctggagctttcta
gattttgacatttgctttggactgcggtgtccatttctcgtctgtgtttt
cagtgcctgagcttctggccttggtctctcctgtgaagcctgtggtctgt
ggttgctgtgagtctgaaagtgtttattttccacatttccctccaggtgg
gttttctttattgagtcgttcatatcggatctgaacgttttgaaatcatt
tcgtccactgttttgagttccggaattccgtcaggaattatccctatatt
gctgcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114544997_114546168
seq2: B6Ng01-313M17.b_48_1195

seq1  GAATTCATATTTCACGCACTCTCTCGGGCACACACAATATTTCCTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTTCACGCACTCTCTCGGGCACACACAATATTTCCTCATCT  50

seq1  ATTTTCCCAGGCTGTTTCCTGTGACTTGCCTTTTTCTCTGTGTTTGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCAGGCTGTTTCCTGTGACTTGCCTTTTTCTCTGTGTTTGCTCA  100

seq1  GGGGAGGTGTGCTATTAAGTCAGAGGCAGTTCTTCCATCTCCAGGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTGTGCTATTAAGTCAGAGGCAGTTCTTCCATCTCCAGGGAGAA  150

seq1  GCTTGACATCGTTCCAGGCGAGGCCCTGCCTTCTATTATTTATGGATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACATCGTTCCAGGCGAGGCCCTGCCTTCTATTATTTATGGATAAA  200

seq1  ACACTTTACATTGTAAAATAGCAGACCAGCCCCATCTAAGACCCATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTACATTGTAAAATAGCAGACCAGCCCCATCTAAGACCCATTTAT  250

seq1  GAAGTAAACTGAACCATCTGCATTTCAGAAAGACAGAGTTGGGGTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAACTGAACCATCTGCATTTCAGAAAGACAGAGTTGGGGTGCTGA  300

seq1  AAGTTAGATGACCCCCCAAGGTCACATGCAAAAGTAGAAACTCCCCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGATGACCCCCCAAGGTCACATGCAAAAGTAGAAACTCCCCCAGG  350

seq1  GGCCTTCTCTGTGTGTAGTGCTCACTCCCATGGCCACCTGGGTGCCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCTCTGTGTGTAGTGCTCACTCCCATGGCCACCTGGGTGCCTAGG  400

seq1  CTCACAGCCATGTGAAATGGACAAGCTGGCATGATTTTCACACTCACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCCATGTGAAATGGACAAGCTGGCATGATTTTCACACTCACCAC  450

seq1  TGTGCCAGGCAGCTTCCTGGTGCATTAGCTCATCAATTTCACATCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGGCAGCTTCCTGGTGCATTAGCTCATCAATTTCACATCTCTCT  500

seq1  GGCATTAGAGAGCCCTATTAGTCTCGTTTTAAAGATGATGACATTGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGAGAGCCCTATTAGTCTCGTTTTAAAGATGATGACATTGAAAG  550

seq1  ACGGAAGATGTTGTTATGATTCTGTCCTTGGCCAGAGTCGCATCTTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAGATGTTGTTATGATTCTGTCCTTGGCCAGAGTCGCATCTTCTCC  600

seq1  AGCCAGGCCTTGATATGTAGGCTTCTGAGTTCGTTCCTACATTATCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCCTTGATATGTAGGCTTCTGAGTTCGTTCCTACATTATCCCCT  650

seq1  TTTAATAAGAAACTTTTTAGTTTGATGTAGCCAGATTCTTCCATTCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAGAAACTTTTTAGTTTGATGTAGCCAGATTCTTCCATTCCCAG  700

seq1  AGTCTAAACAGGTTGCTCTCCCCTCATCTCACATGCAACCTCAGCAACGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAACAGGTTGCTCTCCCCTCATCTCACATGCAACCTCAGCAACGT  750

seq1  CCTATAGTATCAGATTAACCAGAACACCTCCTCCTTCCTCAGGATTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGTATCAGATTAACCAGAACACCTCCTCCTTCCTCAGGATTCTCT  800

seq1  TGGGAATTTTCCATGCAGTGACCACCATCTTTGTGCACAGTGGCTATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTTTCCATGCAGTGACCACCATCTTTGTGCACAGTGGCTATAAA  850

seq1  TTCCCACTTTGCTTTGTTGTATTAGAAACTGAGCCCAACTATCTCCCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTTTGCTTTGTTGTATTAGAAACTGAGCCCAACTATCTCCCATT  900

seq1  GCAAAGCCCATTGTGGACCAATTATGATACCAATGAACCAAGTTTGCCTT  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCAAAGCCCATTGTGGACCAATTATGATACCAATGAACC-AGTTTGCCTT  949

seq1  ACCATTCTTTGGCAAGGATCATAAATAATATTTGTTTTGATGATATCCAG  1000
      ||||||||||||||  |||||| ||||||||||| |||||||||||||||
seq2  ACCATTCTTTGGCA--GATCAT-AATAATATTTG-TTTGATGATATCCAG  995

seq1  CCTGTAATTGATGAAGCCTACATTTGGACCCCAGTATGAAGA-GAGACAG  1049
       |||| ||||||| |||||||||| ||| ||||||||||||| |||||||
seq2  -CTGT-ATTGATG-AGCCTACATTGGGA-CCCAGTATGAAGAGGAGACAG  1041

seq1  TACTGTACTGCCTCTCTTGCTGTTGCTGGTCCCTAAGATGCACAGGCTCA  1099
      |||||||||||||||| |||||||||| ||||   |||||| || |||||
seq2  TACTGTACTGCCTCTC-TGCTGTTGCT-GTCC--TAGATGC-CA-GCTCA  1085

seq1  GGGATTTCAGAGCAGAGGTCACTTTACTTTATAGATCTCAGGTCCTCCCC  1149
      |    |||||| ||   ||||||||||||  |||||||||||||   |||
seq2  G---ATTCAGACCA---GTCACTTTACTT--TAGATCTCAGGTC--TCCC  1125

seq1  TAGTTCCTACTAGAAT-GAGCATC  1172
      ||||| |||||||||| |||||||
seq2  TAGTT-CTACTAGAATGGAGCATC  1148