BAC Information

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BAC

Clone NameB6Ng01-314C20
Chromosome10 (Build37)
Map Location 86,966,910 - 87,094,225
singlet/doubletdoublet
Overlap genePah
Upstream geneEG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik, Ascl1
Downstream geneLOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314C20.bB6Ng01-314C20.g
ACCGA105191GA105192
length3591,053
definitionB6Ng01-314C20.b B6Ng01-314C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,093,861 - 87,094,225)(86,966,910 - 86,967,955)
sequence
catgtttttttttcaaggagctgccgtgggcttctgagatgtctccatcc
cagcctactataggcagtccctgtcattgtatgctgttcccagcatggat
ggaaacaaatggaaatcattaaatgctcactcaaccaaaaggtattgatt
ggttaatgaattttgtctattttctctttattactagattttgagattta
aagcaaaagagagagaagttggatgggtggagaggtggtgggtattctgg
gaggagataagggagggtgctccttgatcacaatttacaatgtaaaaaga
atatcttcaaaaaaattaatttatttttttaacgactgaagtctggatcc
cctatggtt
gacctggtaattaattgacgtgtcttcctttgcgcgacgtgtgggtcgcc
tgccacctgctggtcatttgttaaaatgaagcaggaaccgtggaagggaa
aatctgtaatgaaaaaatgtaattccacatcactcagttcaattaattaa
ttcttctttgtgcaatgcagtttaaccatagagcaccatgaggtatgggt
cccatccattaggatggccacattactatatctaagattctctctctctt
tctctctctctctctctctctctctctctctctctctctctccccctctc
tctcgtatgtgtgtacacatgtgcatatgtgtgtatatgtgcctggaagc
cagaggacaccttcttcatcagtcaggctcccccttaatttttgacgcag
tatctctcactgagtcattagctcatccatttggtgagaccttctggcca
ttgagctccaagaatctttctcttccctttctccctaccactactgtgac
tggtttttattttattttacttttgctgttctgaacttggctccacatct
ttgagctgcaagagctttatagactgagtgagccatctctctgaacacgt
gaggtgtgcttagcagtcggacttggaagcttcatctcatgcctacccaa
atatgactagacacattttctatgtgttctcacaacaagccacatttcct
aagccaaggatgggaactgcctcacttgaagcacgccaagtgggagggca
gtgacaatcagtgaaggccgaatcttttcctaataagagatttgtatttg
tcctgcaaggtcaggtaccctggtggtttgagggcaggggaaatgggtac
ggtattttggagatggattttcctatggccctagttattggtcagaacct
gaatcagatggaaagaggccaacagacagcttgctccatgttagggatat
ctcgtttcttgccttcacttgcacttcactgagtcgttcgagtgggaggc
tacttcttggctttgcatatgacatcatcctctaggcttccctctcttat
cca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_87093861_87094225
seq2: B6Ng01-314C20.b_46_410 (reverse)

seq1  AACCATAGGGGTTCCAGACTTCAGTCTTTTTAAAAATAAATTAATTTTAT  50
      ||||||||||| |||||||||||||| ||  ||||||||||||||||| |
seq2  AACCATAGGGGATCCAGACTTCAGTCGTTAAAAAAATAAATTAATTTTTT  50

seq1  TGAAAATATTCTTTCTACACTGTATATTCTGATCATGGTGTACCCTCCCT  100
      |||| ||||||||| |||| |||| ||| |||||| || | |||||||||
seq2  TGAAGATATTCTTTTTACATTGTAAATTGTGATCAAGGAGCACCCTCCCT  100

seq1  TATCTCCTCCCAGAATACCCACCACCTCTCCACCCATCCAACTTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTCCCAGAATACCCACCACCTCTCCACCCATCCAACTTCTCTCT  150

seq1  CTTTTGCTTTAAATCTCAAAATCTAGTAATAAAGAGAAAATAGACAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTTAAATCTCAAAATCTAGTAATAAAGAGAAAATAGACAAAAT  200

seq1  TCATTAACCAATCAATACCTTTTGGTTGAGTGAGCATTTAATGATTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACCAATCAATACCTTTTGGTTGAGTGAGCATTTAATGATTTCCA  250

seq1  TTTGTTTCCATCCATGCTGGGAACAGCATACAATGACAGGGACTGCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCATCCATGCTGGGAACAGCATACAATGACAGGGACTGCCTAT  300

seq1  AGTAGGCTGGGATGGAGACATCTCAGAAGCCCACGGCAGCTCCTTGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTGGGATGGAGACATCTCAGAAGCCCACGGCAGCTCCTTGAAAA  350

seq1  AAAAACATGGAATTC  365
      |||||||||||||||
seq2  AAAAACATGGAATTC  365

seq1: chr10_86966910_86967955
seq2: B6Ng01-314C20.g_75_1127

seq1  GACCTGGTAATTAATTGACGTGTCTTCCTTTGCGCGACGTGTGGGTCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTAATTAATTGACGTGTCTTCCTTTGCGCGACGTGTGGGTCGCC  50

seq1  TGCCACCTGCTGGTCATTTGTTAAAATGAAGCAGGAACCGTGGAAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTGCTGGTCATTTGTTAAAATGAAGCAGGAACCGTGGAAGGGAA  100

seq1  AATCTGTAATGAAAAAATGTAATTCCACATCACTCAGTTCAATTAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTAATGAAAAAATGTAATTCCACATCACTCAGTTCAATTAATTAA  150

seq1  TTCTTCTTTGTGCAATGCAGTTTAACCATAGAGCACCATGAGGTATGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTGTGCAATGCAGTTTAACCATAGAGCACCATGAGGTATGGGT  200

seq1  CCCATCCATTAGGATGGCCACATTACTATATCTAAGATTCTCTCTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCATTAGGATGGCCACATTACTATATCTAAGATTCTCTCTCTCTT  250

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTC  300

seq1  TCTCGTATGTGTGTACACATGTGCATATGTGTGTATATGTGCCTGGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTATGTGTGTACACATGTGCATATGTGTGTATATGTGCCTGGAAGC  350

seq1  CAGAGGACACCTTCTTCATCAGTCAGGCTCCCCCTTAATTTTTGACGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACACCTTCTTCATCAGTCAGGCTCCCCCTTAATTTTTGACGCAG  400

seq1  TATCTCTCACTGAGTCATTAGCTCATCCATTTGGTGAGACCTTCTGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCACTGAGTCATTAGCTCATCCATTTGGTGAGACCTTCTGGCCA  450

seq1  TTGAGCTCCAAGAATCTTTCTCTTCCCTTTCTCCCTACCACTACTGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCCAAGAATCTTTCTCTTCCCTTTCTCCCTACCACTACTGTGAC  500

seq1  TGGTTTTTATTTTATTTTACTTTTGCTGTTCTGAACTTGGCTCCACATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTATTTTATTTTACTTTTGCTGTTCTGAACTTGGCTCCACATCT  550

seq1  TTGAGCTGCAAGAGCTTTATAGACTGAGTGAGCCATCTCTCTGAACACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGCAAGAGCTTTATAGACTGAGTGAGCCATCTCTCTGAACACGT  600

seq1  GAGGTGTGCTTAGCAGTCGGACTTGGAAGCTTCATCTCATGCCTACCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTGCTTAGCAGTCGGACTTGGAAGCTTCATCTCATGCCTACCCAA  650

seq1  ATATGACTAGACACATTTTCTATGTGTTCTCACAACAAGCCACATTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACTAGACACATTTTCTATGTGTTCTCACAACAAGCCACATTTCCT  700

seq1  AAGCCAAGGATGGGAACTGCCTCACTTGAAGCACGCCAAGTGGGAGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGGATGGGAACTGCCTCACTTGAAGCACGCCAAGTGGGAGGGCA  750

seq1  GTGACAATCAGTGAAGGCCGAATC-TTTCCTAATAAGAGATTTGTATTTG  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGACAATCAGTGAAGGCCGAATCTTTTCCTAATAAGAGATTTGTATTTG  800

seq1  TCCTGCAAGGTCAGGTACCCTGGTGGTTTGAGGGCAGGGGAAATGGGTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAGGTCAGGTACCCTGGTGGTTTGAGGGCAGGGGAAATGGGTAC  850

seq1  GGTATTTTGGAGATGGATTTTCCTAATGGCCCTAGTAATTGGTCAGAAAC  899
      |||||||||||||||||||||||| ||||||||||| ||||||||| |||
seq2  GGTATTTTGGAGATGGATTTTCCT-ATGGCCCTAGTTATTGGTCAG-AAC  898

seq1  CTGAATCAGAGGGAAAGAGGCCAACAGACAGCTTGCTCCATGTTAGGGAT  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCAGATGGAAAGAGGCCAACAGACAGCTTGCTCCATGTTAGGGAT  948

seq1  ATCTCG-TTCTTGCCTTCACTTGCACTCCACTGAGTCG-TCCAGT-GGAG  996
      |||||| |||||||||||||||||||| |||||||||| || ||| ||||
seq2  ATCTCGTTTCTTGCCTTCACTTGCACTTCACTGAGTCGTTCGAGTGGGAG  998

seq1  GCTACTTCTTGGCCTGGC-TATGACATCATCCTC-AGGCT--CCTCTC-T  1041
      ||||||||||||| | || ||||||||||||||| |||||  |||||| |
seq2  GCTACTTCTTGGCTTTGCATATGACATCATCCTCTAGGCTTCCCTCTCTT  1048

seq1  ATCCA  1046
      |||||
seq2  ATCCA  1053