BAC Information

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BAC

Clone NameB6Ng01-314G07
Chromosome10 (Build37)
Map Location 103,483,951 - 103,657,889
singlet/doubletdoublet
Overlap geneEG627488, EG667692, EG667695, LOC100043292
Upstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314G07.bB6Ng01-314G07.g
ACCGA105342GA105343
length1,0911,070
definitionB6Ng01-314G07.b B6Ng01-314G07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,656,793 - 103,657,889)(103,483,951 - 103,484,815)
sequence
gaattcttattcatggctctaaaagagagggtaggaaagtaattgcacaa
attggaagggagaaagcactaagctgcaagtgggtacacagggggagggg
caaggaaagagtggcataggagaaagagaagacacaaacaaaagtcagca
tttagaaaagtctctagaaaactatcggtgtgcaacgtaacttacaataa
ataaatttaaagtgaaataacatgttgaaagtccttccattcaagaaatg
tgtatttggatgctactatgataccataataaagaatacagaatagaatg
aagcccgtgctgtaccagtgaaagccttgaatcttagaatagggcccgtg
acaacaccctacactgactaatctaaatcttaaacttctcttcatggcat
gatattaatcagtgaaagatgagaaaggagtatatttatacatatatata
tatatatatatatatatatatatacatacacacacacacacatatatata
tatatatatatgtgtgtgtataagataccatatcaaaattctccatttcc
caactctctactcgaacctttcactgctattttctgtcaagaaatgcatt
tatttatgaatattttacaactaaacgggtacttgatatacaaaatacag
gattattacactgtttgtcactgccatgaaatttaacataatttatagat
ttgtttacttaaatccaccacaagcaaagtaatgaaattaaattcattaa
atatgtactttgacattcatgtttttccctgcatataattgccttactag
ttttgtacataacttctatagggtagataacattaataagtccactagga
taatgaattgctttttagcaatctgtgaaaaatcctactccctaaaattt
tatgtcatagcttctgtgcatatggaaatttttgtgtatttgttctagat
agctacagaaaacagattctaccatagttttacacttaagaaaattattt
ttttcttctttgaattttatgtactgacatgcaaacatactctcataaag
catagctcaagggttcatacggtttgcataaacacaacagg
gaattcctgatgttttgagatggttttagctgttttgctaggaagtttca
ataaaattagaaccagaaataaaatgtgcccactcctcataatagtaagt
aaaggttgtacaataagagaaaaaagtgagctttcttaattacaagcaaa
agagaaataggacttggacaaatttatgtttaaggaaaaacattcagggc
caaggatgaagcaacaggtgtgcactgtaataaggcaaccatgggaacct
gttgttgtgaacttataatgaggttacagaataaaacactgctttgaact
tatatcaataacctttgtaactcctcttttgtgtaacattttgtatataa
ggtaattttctgagacagagaaaagatccacccatccaaatgtatatatg
tttgtttgtttatatgtgtctatatgtctgtaagcatgcatcaacactcg
tggagctgattgagacaggtggctggaccccgccagaatatgtgtaaatg
aatgtatgtgtgtgtatgaatgaacttgtggctgtgcataaattcctatg
taaagatttttattctttttctttccttcctcttgggttcacaaagagtt
aactgagttaacaaacctgcccagtgaatggttctggcttcctggccaag
gaaggaagcactagcaataaatcctttacctaatgcctaagctgttaagc
aacaagtgttaatcagtcacaaccccacaccccagttggctctctaaaga
gctgtgcagggtcacctttttgcctgccatcttcagacacaacagaagag
ggcatcagatcccattagagatggttgtgagccatcatgtggttgctggg
aattgaattttggacctctggaaaagaagtcaatgctcttaaccactgag
acatttctccagctctaattttctgggttcttaatccacattgttcagtt
cgggagaaacacatttcagaagaaacattaagtttggtgacagtagacag
ggaaaacaaataggaaaatagccgttgctgtcaagaagaaacatagtgtg
acagttgacagggcaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103656793_103657889
seq2: B6Ng01-314G07.b_44_1134 (reverse)

seq1  CCTGTTGTG-TTATGCAAACACGTAATGAACACCTGAGCTATGCTATAAT  49
      ||||||||| |||||||||| ||| |||||| | ||||||||||| ||  
seq2  CCTGTTGTGTTTATGCAAAC-CGT-ATGAACCCTTGAGCTATGCTTTA--  46

seq1  TGAGAGTATGTTTTGCATGTCAGTTACATTAAAATCCAAAGAAG--AAAA  97
      |||||||||| |||||||||||| |||| |||||| ||||||||  ||||
seq2  TGAGAGTATG-TTTGCATGTCAG-TACA-TAAAATTCAAAGAAGAAAAAA  93

seq1  ATAATTTTCTTAAGTGTAAAACCTATGGGTTAGAATCTG-TTTCTGTAGC  146
      ||||||||||||||||||||| ||||||  ||||||||| ||||||||||
seq2  ATAATTTTCTTAAGTGTAAAA-CTATGG--TAGAATCTGTTTTCTGTAGC  140

seq1  TATTCTAGAACAAAATACACAAAAATTTCCATATGCACAGAAGCTATGAC  196
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TA-TCTAGAAC-AAATACACAAAAATTTCCATATGCACAGAAGCTATGAC  188

seq1  ATAAAATTTTAGGGAGTAGGATTTTTCACAGATTGCTAAAAAGCAATTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTTAGGGAGTAGGATTTTTCACAGATTGCTAAAAAGCAATTCA  238

seq1  TTATCCTAGTGGACTTATTAATGTTATCTACCCTATAGAAGTTATGTACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTAGTGGACTTATTAATGTTATCTACCCTATAGAAGTTATGTACA  288

seq1  AAACTAGTAAGGCAATTATATGCAGGGAAAAACATGAATGTCAAAGTACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGTAAGGCAATTATATGCAGGGAAAAACATGAATGTCAAAGTACA  338

seq1  TATTTAATGAATTTAATTTCATTACTTTGCTTGTGGTGGATTTAAGTAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATGAATTTAATTTCATTACTTTGCTTGTGGTGGATTTAAGTAAA  388

seq1  CAAATCTATAAATTATGTTAAATTTCATGGCAGTGACAAACAGTGTAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTATAAATTATGTTAAATTTCATGGCAGTGACAAACAGTGTAATA  438

seq1  ATCCTGTATTTTGTATATCAAGTACCCGTTTAGTTGTAAAATATTCATAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTATTTTGTATATCAAGTACCCGTTTAGTTGTAAAATATTCATAA  488

seq1  ATAAATGCATTTCTTGACAGAAAATAGCAGTGAAAGGTTCGAGTAGAGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCATTTCTTGACAGAAAATAGCAGTGAAAGGTTCGAGTAGAGAG  538

seq1  TTGGGAAATGGAGAATTTTGATATGGTATCTTATACACACACATATATAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAATGGAGAATTTTGATATGGTATCTTATACACACACATATATAT  588

seq1  ATATATATATATGTGTGTGTGTGTGTATG--TATATATATATATATATAT  644
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  ATATATATATATGTGTGTGTGTGTGTATGTATATATATATATATATATAT  638

seq1  ATATATATATATGTATAAATATACTCCTTTCTCATCTTTCACTGATTAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATGTATAAATATACTCCTTTCTCATCTTTCACTGATTAAT  688

seq1  ATCATGCCATGAAGAGAAGTTTAAGATTTAGATTAGTCAGTGTAGGGTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCCATGAAGAGAAGTTTAAGATTTAGATTAGTCAGTGTAGGGTGT  738

seq1  TGTCACGGGCCCTATTCTAAGATTCAAGGCTTTCACTGGTACAGCACGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACGGGCCCTATTCTAAGATTCAAGGCTTTCACTGGTACAGCACGGG  788

seq1  CTTCATTCTATTCTGTATTCTTTATTATGGTATCATAGTAGCATCCAAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCTATTCTGTATTCTTTATTATGGTATCATAGTAGCATCCAAAT  838

seq1  ACACATTTCTTGAATGGAAGGACTTTCAACATGTTATTTCACTTTAAATT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTCTTGAATGGAAGGACTTTCAACATGTTATTTCACTTTAAATT  888

seq1  TATTTATTGTAAGTTACGTTGCACACCGATAGTTTTCTAGAGACTTTTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTGTAAGTTACGTTGCACACCGATAGTTTTCTAGAGACTTTTCT  938

seq1  AAATGCTGACTTTTGTTTGTGTCTTCTCTTTCTCCTATGCCACTCTTTCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGACTTTTGTTTGTGTCTTCTCTTTCTCCTATGCCACTCTTTCC  988

seq1  TTGCCCCTCCCCCTGTGTACCCACTTGCAGCTTAGTGCTTTCTCCCTTCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCTCCCCCTGTGTACCCACTTGCAGCTTAGTGCTTTCTCCCTTCC  1038

seq1  AATTTGTGCAATTACTTTCCTACCCTCTCTTTTAGAGCCATGAATAAGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGCAATTACTTTCCTACCCTCTCTTTTAGAGCCATGAATAAGAA  1088

seq1  TTC  1097
      |||
seq2  TTC  1091

seq1: chr10_103483951_103484815
seq2: B6Ng01-314G07.g_282_1135

seq1  GGTGTGCACTGTAATAAGGCAACCATGGGAACCTGTTGTTGTGAACTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCACTGTAATAAGGCAACCATGGGAACCTGTTGTTGTGAACTTAT  50

seq1  AATGAGGTTACAGAATAAAACACTGCTTTGAACTTATATCAATAACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTTACAGAATAAAACACTGCTTTGAACTTATATCAATAACCTTT  100

seq1  GTAACTCCTCTTTTGTGTAACATTTTGTATATAAGGTAATTTTCTGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCCTCTTTTGTGTAACATTTTGTATATAAGGTAATTTTCTGAGAC  150

seq1  AGAGAAAAGATCCACCCATCCAAATGTATATATGTTTGTTTGTTTATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGATCCACCCATCCAAATGTATATATGTTTGTTTGTTTATATG  200

seq1  TGTCTATATGTCTGTAAGCATGCATCAACACTCGTGGAGCTGATTGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATATGTCTGTAAGCATGCATCAACACTCGTGGAGCTGATTGAGAC  250

seq1  AGGTGGCTGGACCCCGCCAGAATATGTGTAAATGAATGTATGTGTGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTGGACCCCGCCAGAATATGTGTAAATGAATGTATGTGTGTGTA  300

seq1  TGAATGAACTTGTGGCTGTGCATAAATTCCTATGTAAAGATTTTTATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAACTTGTGGCTGTGCATAAATTCCTATGTAAAGATTTTTATTCT  350

seq1  TTTTCTTTCCTTCCTCTTGGGTTCACAAAGAGTTAACTGAGTTAACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCCTTCCTCTTGGGTTCACAAAGAGTTAACTGAGTTAACAAAC  400

seq1  CTGCCCAGTGAATGGTTCTGGCTTCCTGGCCAAGGAAGGAAGCACTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGTGAATGGTTCTGGCTTCCTGGCCAAGGAAGGAAGCACTAGCA  450

seq1  ATAAATCCTTTACCTAATGCCTAAGCTGTTAAGCAACAAGTGTTAATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCTTTACCTAATGCCTAAGCTGTTAAGCAACAAGTGTTAATCAG  500

seq1  TCACAACCCCACACCCCAGTTGGCTCTCTAAAGAGCTGTGCAGGGTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCCCACACCCCAGTTGGCTCTCTAAAGAGCTGTGCAGGGTCACC  550

seq1  TTTTTGCCTGCCATCTTCAGACACAACAGAAGAGGGCATCAGATCCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCTGCCATCTTCAGACACAACAGAAGAGGGCATCAGATCCCATT  600

seq1  AGAGATGGTTGTGAGCCATCATGTGGTTGCTGGGAATTGAATTTTGGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGTTGTGAGCCATCATGTGGTTGCTGGGAATTGAATTTTGGACC  650

seq1  TCTGGAAAAGAAGTCAATGCTCTTAACCACTGAGACATTTCTCCAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAAGAAGTCAATGCTCTTAACCACTGAGACATTTCTCCAGCTCT  700

seq1  AATTTTCT-GGTTCTTAATCCACATTGTTCAGTTCGGGAGAAAACAACAT  749
      |||||||| ||||||||||||||||||||||||||||||||||   ||||
seq2  AATTTTCTGGGTTCTTAATCCACATTGTTCAGTTCGGGAGAAA--CACAT  748

seq1  TTCAAGGAAGAAACATTAAG-TTGGTGACAGTAGAACAGGGAAAACAAAT  798
      ||||  |||||||||||||| ||||||||||||| |||||||||||||||
seq2  TTCA--GAAGAAACATTAAGTTTGGTGACAGTAG-ACAGGGAAAACAAAT  795

seq1  AGG-AAATAGCCGGTTTGCTGTTCAAGGAAGAAACATTAAGTTGGTGACA  847
      ||| |||||||||  |||||| |||| ||||||||||  |||  ||||||
seq2  AGGAAAATAGCCG--TTGCTG-TCAA-GAAGAAACAT--AGT--GTGACA  837

seq1  GTGGAACAGGGAAAACAA  865
      || | |||||| ||||||
seq2  GTTG-ACAGGGCAAACAA  854