BAC Information

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BAC

Clone NameB6Ng01-314K15
Chromosome10 (Build37)
Map Location 80,168,479 - 80,327,267
singlet/doubletdoublet
Overlap geneAp3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik
Upstream geneBsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik
Downstream geneTmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314K15.bB6Ng01-314K15.g
ACCGA105529GA105530
length1,0791,083
definitionB6Ng01-314K15.b B6Ng01-314K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,168,479 - 80,169,559)(80,326,182 - 80,327,267)
sequence
gaattctctcagcctcaggatggatgatacagtgggctttgtaaaagtgg
agcaggttagtgtgtgatccaggtcagagacacagctggaccacactgca
gagagcacctagcagcagagataggctggctgggagaagttgatgcagga
gacccaggggttcctttttgttttggtgtccttgtcaccttggtttcctt
gtcaccatgtcccctggccccaggcagaagcatttccaggcacattccta
cagttcttgctcatgggacaggcagcaagttagttttgtttttaacaagg
actacacatggcagcatctagagtccctccttcctccaatggactggaag
agcagtctgaacaggatgaatagggacactaggtgttgtgttgggaactc
cagctgcactctgtggccagtcatcaaccacagcaatgggtacactgtag
ctaccgctgctgctgaagactacctctgtgggtcctggctagggctggca
ggatgcttgaagcagtgagagagtgctgcatggtctcagatggggcactg
gatgaggccttgggcacagcagcatttggggacttcagttgcagttgagt
ttatttgaaaaggagtcttcctttttccccatcaacgaagtggcagtgag
ctgccgagatggagcaagggcctttttcaactcaagttcctgctctcccc
cctcacagccacaggagcagttagaatgctgcggagtggaaaggtagctc
tgtggttaagactcttgcagaggaccccaggttttccaatatagggtggc
tcacaactacctggagctgtagttccagggaacccagagcattctcctgg
cacaaggtacagacattttttttttccctttcaagctaggtctctatgtc
acctttgactatcctggaacttgctctgtagaccaggttggcctcactca
gagatccccatgcctctggctcccaagtgccggattaaaggtgtgtgtta
ccaccaattttgatctagccatgcagtgggagattggaaggtattgatac
agacaactgttctttctgttctgcactca
gaattcagtgcaggagaaaatggagcttctatcgccacggggtggacggc
aagtggcacctgggcatcaggtgctgcctgagcccacgccaagatgtgag
tgacaaatagtggctctgggccagcatgtccccttgccctgcccaggagc
taggcgaaggatggacagaacccttatctagattcctatcggggtgtggg
ctcttggccaggcctaaatgaaacgggacacgggcaggcggcagccgtgg
tgtgtagccctaaagatgggaagcccaaggcctcactgggcagcgggggc
acccgaggacagcagtgagaagccgacagggtggatgtcagaagagcctg
ggacaaagcaacacttactggtcctcatttcggaagataccccacaccac
ggagacagtgacacagaagagtgccagcagcagcatgcgggcctgtgggc
gcttgtggaagtacggcaggttgttgtcggggaccctggaggggaccacc
cgtcagcgtccctcttccctcacctcaacaccaccctgagcctcgattgc
atgctggcttgtgcctgccgtcccctctcagccctgagtaggagccctga
ctatgtggcatgtccctctggctctaggatagcaaccctaaaggcctcca
ccctgtggctgctggcctcacctagccacaggtggctctgaagcagtgcc
atccaggggcaggtagagctttggaggcctatgatgttgccactcccttc
ccagcctaccatccttggcctcactctctgggacccccgtgtcataccct
gtggctcagttagacaggaaagggtatacagtgcacaggcaactagagcc
ccaaagcctacccaacccatgaccagcacttagtaagcacctcctggatc
tctgaatacgccaggagggtaggagactgcaggaggaggaaggagggggc
ctgtttaggcctggcctcacctgcacgtgcagagggcagctttccgcaca
aaggtgccagacagctgtagagacccggtggaggagccaggcagagattc
catgatcaacgtagactgccgggccagccaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_80168479_80169559
seq2: B6Ng01-314K15.b_48_1126

seq1  GAATTCTCTCAGCCTCAGGATGGATGATACAGTGGGCTTTGTAAAAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGCCTCAGGATGGATGATACAGTGGGCTTTGTAAAAGTGG  50

seq1  AGCAGGTTAGTGTGTGATCCAGGTCAGAGACACAGCTGGACCACACTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTAGTGTGTGATCCAGGTCAGAGACACAGCTGGACCACACTGCA  100

seq1  GAGAGCACCTAGCAGCAGAGATAGGCTGGCTGGGAGAAGTTGATGCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCACCTAGCAGCAGAGATAGGCTGGCTGGGAGAAGTTGATGCAGGA  150

seq1  GACCCAGGGGTTCCTTTTTGTTTTGGTGTCCTTGTCACCTTGGTTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGGGTTCCTTTTTGTTTTGGTGTCCTTGTCACCTTGGTTTCCTT  200

seq1  GTCACCATGTCCCCTGGCCCCAGGCAGAAGCATTTCCAGGCACATTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATGTCCCCTGGCCCCAGGCAGAAGCATTTCCAGGCACATTCCTA  250

seq1  CAGTTCTTGCTCATGGGACAGGCAGCAAGTTAGTTTTGTTTTTAACAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTGCTCATGGGACAGGCAGCAAGTTAGTTTTGTTTTTAACAAGG  300

seq1  ACTACACATGGCAGCATCTAGAGTCCCTCCTTCCTCCAATGGACTGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACATGGCAGCATCTAGAGTCCCTCCTTCCTCCAATGGACTGGAAG  350

seq1  AGCAGTCTGAACAGGATGAATAGGGACACTAGGTGTTGTGTTGGGAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTGAACAGGATGAATAGGGACACTAGGTGTTGTGTTGGGAACTC  400

seq1  CAGCTGCACTCTGTGGCCAGTCATCAACCACAGCAATGGGTACACTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCACTCTGTGGCCAGTCATCAACCACAGCAATGGGTACACTGTAG  450

seq1  CTACCGCTGCTGCTGAAGACTACCTCTGTGGGTCCTGGCTAGGGCTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGCTGCTGCTGAAGACTACCTCTGTGGGTCCTGGCTAGGGCTGGCA  500

seq1  GGATGCTTGAAGCAGTGAGAGAGTGCTGCATGGTCTCAGATGGGGCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTGAAGCAGTGAGAGAGTGCTGCATGGTCTCAGATGGGGCACTG  550

seq1  GATGAGGCCTTGGGCACAGCAGCATTTGGGGACTTCAGTTGCAGTTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGCCTTGGGCACAGCAGCATTTGGGGACTTCAGTTGCAGTTGAGT  600

seq1  TTATTTGAAAAGGAGTCTTCCTTTTTCCCCATCAACGAAGTGGCAGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAAAAGGAGTCTTCCTTTTTCCCCATCAACGAAGTGGCAGTGAG  650

seq1  CTGCCGAGATGGAGCAAGGGCCTTTTTCAACTCAAGTTCCTGCTCTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGAGATGGAGCAAGGGCCTTTTTCAACTCAAGTTCCTGCTCTCCCC  700

seq1  CCTCACAGCCACAGGAGCAGTTAGAATGCTGCGGAGTGGAAAGGTAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGCCACAGGAGCAGTTAGAATGCTGCGGAGTGGAAAGGTAGCTC  750

seq1  TGTGGTTAAGACTCTTGCAGAGGACCCCAGGTTTTCCAATATAGGGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTAAGACTCTTGCAGAGGACCCCAGGTTTTCCAATATAGGGTGGC  800

seq1  TCACAACTACCTGGAGCTGTAGTTCCAGGGAACCCAGAGCATTCTCCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTACCTGGAGCTGTAGTTCCAGGGAACCCAGAGCATTCTCCTGG  850

seq1  CACAAGGTACAGACATTTTTTTTTTCCCTTTCAAGCTAGGTCTCTATGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGTACAGACATTTTTTTTTTCCCTTTCAAGCTAGGTCTCTATGTC  900

seq1  ACC-TTGACTATCCTGGAACTTGCTCTGTAGACCAGGTTGGCCTCCAACT  949
      ||| |||||||||||||||||||||||||||||||||||||||||  |||
seq2  ACCTTTGACTATCCTGGAACTTGCTCTGTAGACCAGGTTGGCCTC--ACT  948

seq1  CAGAGATCCCCATGCCTCTGGCTCCCAAGTGCCGGGATTAAAGGTGTGTG  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGAGATCCCCATGCCTCTGGCTCCCAAGTGCC-GGATTAAAGGTGTGTG  997

seq1  TTACCA-CAATTTTGAATTCTAGCATGGCAAGTGGAGATTGG-AGGTAAT  1047
      |||||| |||||||||  ||||||   |||   ||||||||| ||||| |
seq2  TTACCACCAATTTTGA--TCTAGCCATGCAGTGGGAGATTGGAAGGTATT  1045

seq1  GATACAGGACAACTG-TCTTCTGGTTCTGCACTCA  1081
      |||||| |||||||| ||||   ||||||||||||
seq2  GATACA-GACAACTGTTCTTTCTGTTCTGCACTCA  1079

seq1: chr10_80326182_80327267
seq2: B6Ng01-314K15.g_65_1147 (reverse)

seq1  GCCTGCCTGGCCCCGCAGTCTACG-TGATCATTGGAATCTTCTGCCTGGC  49
      ||||| ||||||| |||||||||| |||||| ||||||| ||||||||| 
seq2  GCCTGGCTGGCCCGGCAGTCTACGTTGATCA-TGGAATC-TCTGCCTGG-  47

seq1  CTCCTCCACC-GGTCTCTACAGCTGTCTGGCACCCTTTGTGCGG-AAGCT  97
      |||||||||| ||||||||||||||||||||| ||||||||||| |||||
seq2  CTCCTCCACCGGGTCTCTACAGCTGTCTGGCA-CCTTTGTGCGGAAAGCT  96

seq1  GCCCTTCTGCACGTGCAGGTGAGGCCCAGGCCTAACCAGGCCCCCTCCTT  147
      |||| ||||||||||||||||||| |||||||||| ||||||||||||||
seq2  GCCC-TCTGCACGTGCAGGTGAGG-CCAGGCCTAAACAGGCCCCCTCCTT  144

seq1  CCTCCTCCTGCAGTCTCCTACCCTCCTGGCGTATTCAGAGATCCAGGAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTGCAGTCTCCTACCCTCCTGGCGTATTCAGAGATCCAGGAGG  194

seq1  TGCTTACTAAGTGCTGGTCATGGGTTGGGTAGGCTTTGGGGCTCTAGTTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTAAGTGCTGGTCATGGGTTGGGTAGGCTTTGGGGCTCTAGTTG  244

seq1  CCTGTGCACTGTATACCCCTTCCTGTCTAACTGAGCCACAGGGTATGACA  297
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTGTGCACTGTATACCCTTTCCTGTCTAACTGAGCCACAGGGTATGACA  294

seq1  CGGGGGTCCCAGAGAGTGAGGCCAAGGATGGTAGGCTGGGAAGGGAGTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGTCCCAGAGAGTGAGGCCAAGGATGGTAGGCTGGGAAGGGAGTGG  344

seq1  CAACATCATAGGCCTCCAAAGCTCTACCTGCCCCTGGATGGCACTGCTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCATAGGCCTCCAAAGCTCTACCTGCCCCTGGATGGCACTGCTTC  394

seq1  AGAGCCACCTGTGGCTAGGTGAGGCCAGCAGCCACAGGGTGGAGGCCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACCTGTGGCTAGGTGAGGCCAGCAGCCACAGGGTGGAGGCCTTT  444

seq1  AGGGTTGCTATCCTAGAGCCAGAGGGACATGCCACATAGTCAGGGCTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGCTATCCTAGAGCCAGAGGGACATGCCACATAGTCAGGGCTCCT  494

seq1  ACTCAGGGCTGAGAGGGGACGGCAGGCACAAGCCAGCATGCAATCGAGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGCTGAGAGGGGACGGCAGGCACAAGCCAGCATGCAATCGAGGC  544

seq1  TCAGGGTGGTGTTGAGGTGAGGGAAGAGGGACGCTGACGGGTGGTCCCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGGTGTTGAGGTGAGGGAAGAGGGACGCTGACGGGTGGTCCCCT  594

seq1  CCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGCCCACAGGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCCCCGACAACAACCTGCCGTACTTCCACAAGCGCCCACAGGCC  644

seq1  CGCATGCTGCTGCTGGCACTCTTCTGTGTCACTGTCTCCGTGGTGTGGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCTGCTGCTGGCACTCTTCTGTGTCACTGTCTCCGTGGTGTGGGG  694

seq1  TATCTTCCGAAATGAGGACCAGTAAGTGTTGCTTTGTCCCAGGCTCTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCGAAATGAGGACCAGTAAGTGTTGCTTTGTCCCAGGCTCTTCT  744

seq1  GACATCCACCCTGTCGGCTTCTCACTGCTGTCCTCGGGTGCCCCCGCTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCACCCTGTCGGCTTCTCACTGCTGTCCTCGGGTGCCCCCGCTGC  794

seq1  CCAGTGAGGCCTTGGGCTTCCCATCTTTAGGGCTACACACCACGGCTGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGGCCTTGGGCTTCCCATCTTTAGGGCTACACACCACGGCTGCC  844

seq1  GCCTGCCCGTGTCCCGTTTCATTTAGGCCTGGCCAAGAGCCCACACCCCG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCGTGTCCCGTTTCATTTAGGCCTGGCCAAGAGCCCACACCCCG  894

seq1  ATAGGAATCTAGATAAGGGTTCTGTCCATCCTTCGCCTAGCTCCTGGGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAATCTAGATAAGGGTTCTGTCCATCCTTCGCCTAGCTCCTGGGCA  944

seq1  GGGCAAGGGGACATGCTGGCCCAGAGCCACTATTTGTCACTCACATCTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGGGGACATGCTGGCCCAGAGCCACTATTTGTCACTCACATCTTG  994

seq1  GCGTGGGCTCAGGCAGCACCTGATGCCCAGGTGCCACTTGCCGTCCACCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGGCTCAGGCAGCACCTGATGCCCAGGTGCCACTTGCCGTCCACCC  1044

seq1  CGTGGCGATAGAAGCTCCATTTTCTCCTGCACTGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCGATAGAAGCTCCATTTTCTCCTGCACTGAATTC  1083