BAC Information

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BAC

Clone NameB6Ng01-314O10
Chromosome10 (Build37)
Map Location 31,311,404 - 31,372,129
singlet/doubletdoublet
Overlap geneIbrdc1, LOC667752
Upstream geneTrmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, LOC666055
Downstream geneLOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314O10.bB6Ng01-314O10.g
ACCGA105691GA105692
length1,0981,065
definitionB6Ng01-314O10.b B6Ng01-314O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,311,404 - 31,312,512)(31,371,040 - 31,372,129)
sequence
gaattccagaacctcaggcctacacagagaaatcctgtctcaaacaaaac
aaaaacaaaaacaagctaatattccttattgctcctgtgtaatctgagca
gtgagcaatatgtgggcaggtgacttgcctggccctttatgaaaaggtca
ccatttgggaaatcaaagtagaataaaataaggcaaaaagagtccaaatt
cctgtagagttaaaacgttctgctaacataaaatacagtgaaactattca
gctttccaaacatattttataaatacttaaaatactgaagtattcctgaa
cactacccagtacctttcactaatgataccatctacttggaaaatctctg
acatttagtaaacactactcagtagattggcttcttctagtcataagctg
aactgtatgtacatatttatactctcctaaaatacctgcaaaacatacta
gagcacagatctatgttaaaggtaaacacaaggtagttttcatatatgga
aaaacatcacattggcattaacgccaattgaaatgttactggtcttataa
taaacatagaatgtatcaggaaatcctcaggcactgagggaaataaatca
gtgtgtgggagggaggggccactcagttactcagcatagacccaacagag
cagacctttgtttaagcagccactttatcattacatgcttactgaaaaca
aagaacaggacagccacatcaaaacagcacactctgtggatggcagagct
gtgaccccagagtctgagtcattaaatgcagaggaaatgtaacttagtac
agaaaagaacactgttacaaaaataagaaccagaaaagggaatatagata
attaaacacaattaaatagagaagcaaagggcacttactagccaactcaa
taaacaaaggcgtgcatggaacagaacgaccagtgcccactgttgctgta
gcacctttgctgtctacatgaggagagggtggagctcttgttgtttcaca
ggtggtgaagctaagcactagcatcaaataagcacaaaaatcttcagaaa
aaacaaaatgcacttgaggggagggacacaaaacctgctctattgggt

gaattcttttcatgtagatttgattcaaacacacacacacacacccctat
gttactgtacatagattgtcgttttatttgtccatacctgtgtattattg
ctactaaagggtatgtatgatagccatttaaaaatattttatatttaatt
ctaatgtctgttatctcagtgtggacacctattgagagcttttggttttg
ttcagtttgagatttaaagaatggttgctgaatgtagtaaaaaataataa
atcccagagtggggttccttcctgccttagaccatttatgttcctggttg
aaagacacgcacaaagcctttatatataaaaagtgtcttatgccacacaa
tagctgggcaactgcctaccctccatgctgttagaatctacctcctttcc
ataacccaagttaatacttactaggcttcacctggattgctcttggctcc
aaccagggagccctctgagctatgttttcttgatccagaggccatagtaa
ctcctcttgcttctctgtcccatggccacactctttctctctctcttcct
cttcatggtctctagcccagggaaacctaaaccccacccatgtctcttct
cctcaagtaatggctgttggcatctttatttatcaatcagaattaactga
gagcaggttcccctggcctcttgtgcagtttgggagatccaaattagcat
tcgaatacaagcagcattaggccaacctactacagctgcattcttttaga
ataaaggaatccaaaataacaggaaagaacatcccaggggccttctgatg
gtagaaataaatgttcaagaaagcagattgaatcctacttctactttaac
aaaatccacagagtgactactaaaaattcttctgacctgaacttttgctt
tccctcaatatattagtcttgctcattttcctataagaaaagtcatcaag
ctaggactggagagatgactacaccctcaaacagacatacatgcagacag
acaccatgtacacaaataaaataatgtttttaaaagaaaaaaaaaatcat
cagacccctgaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31311404_31312512
seq2: B6Ng01-314O10.b_49_1146

seq1  GAATTCCAGAACCTCAGGCCTACACAGAGAAATCCTGTCTCAAACAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACCTCAGGCCTACACAGAGAAATCCTGTCTCAAACAAAAC  50

seq1  AAAAACAAAAACAAGCTAATATTCCTTATTGCTCCTGTGTAATCTGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAACAAGCTAATATTCCTTATTGCTCCTGTGTAATCTGAGCA  100

seq1  GTGAGCAATATGTGGGCAGGTGACTTGCCTGGCCCTTTATGAAAAGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAATATGTGGGCAGGTGACTTGCCTGGCCCTTTATGAAAAGGTCA  150

seq1  CCATTTGGGAAATCAAAGTAGAATAAAATAAGGCAAAAAGAGTCCAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGGGAAATCAAAGTAGAATAAAATAAGGCAAAAAGAGTCCAAATT  200

seq1  CCTGTAGAGTTAAAACGTTCTGCTAACATAAAATACAGTGAAACTATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGAGTTAAAACGTTCTGCTAACATAAAATACAGTGAAACTATTCA  250

seq1  GCTTTCCAAACATATTTTATAAATACTTAAAATACTGAAGTATTCCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCAAACATATTTTATAAATACTTAAAATACTGAAGTATTCCTGAA  300

seq1  CACTACCCAGTACCTTTCACTAATGATACCATCTACTTGGAAAATCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCCAGTACCTTTCACTAATGATACCATCTACTTGGAAAATCTCTG  350

seq1  ACATTTAGTAAACACTACTCAGTAGATTGGCTTCTTCTAGTCATAAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGTAAACACTACTCAGTAGATTGGCTTCTTCTAGTCATAAGCTG  400

seq1  AACTGTATGTACATATTTATACTCTCCTAAAATACCTGCAAAACATACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATGTACATATTTATACTCTCCTAAAATACCTGCAAAACATACTA  450

seq1  GAGCACAGATCTATGTTAAAGGTAAACACAAGGTAGTTTTCATATATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGATCTATGTTAAAGGTAAACACAAGGTAGTTTTCATATATGGA  500

seq1  AAAACATCACATTGGCATTAACGCCAATTGAAATGTTACTGGTCTTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCACATTGGCATTAACGCCAATTGAAATGTTACTGGTCTTATAA  550

seq1  TAAACATAGAATGTATCAGGAAATCCTCAGGCACTGAGGGAAATAAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAGAATGTATCAGGAAATCCTCAGGCACTGAGGGAAATAAATCA  600

seq1  GTGTGTGGGAGGGAGGGGCCACTCAGTTACTCAGCATAGACCCAACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGGAGGGAGGGGCCACTCAGTTACTCAGCATAGACCCAACAGAG  650

seq1  CAGACCTTTGTTTAAGCAGCCACTTTATCATTACATGCTTACTGAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTTGTTTAAGCAGCCACTTTATCATTACATGCTTACTGAAAACA  700

seq1  AAGAACAGGACAGCCACATCAAAACAGCACACTCTGTGGATGGCAGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGACAGCCACATCAAAACAGCACACTCTGTGGATGGCAGAGCT  750

seq1  GTGACCCCAGAGTCTGAGTCATTAAATGCAGAGGAAATGTAACTTAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCCAGAGTCTGAGTCATTAAATGCAGAGGAAATGTAACTTAGTAC  800

seq1  AGAAAAGAACACTGTTACAAAAATAAGAACCAGAAAAGGGAATATAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAACACTGTTACAAAAATAAGAACCAGAAAAGGGAATATAGATA  850

seq1  ATTAAACACAATTAAATAGAGAAGCAAAGGGCACTTACTAGCCAACTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACACAATTAAATAGAGAAGCAAAGGGCACTTACTAGCCAACTCAA  900

seq1  TAAACAAAGGCGTGCATGGAACAGAACGACCAGTGCCCACTGTTGCTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAGGCGTGCATGGAACAGAACGACCAGTGCCCACTGTTGCTGTA  950

seq1  GCACCTTTGCTGTCTACATGAGGAGAGGGTGGAGCTCTTGTTTGTTTCAC  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCACCTTTGCTGTCTACATGAGGAGAGGGTGGAGCTCTTG-TTGTTTCAC  999

seq1  AGGGTGGTGAAGGCTAAGCACTAAGCATCAAATTAAGCACAAAATTCCTT  1050
      | ||||||||| |||||||||| ||||||||| ||||||||||| ||  |
seq2  A-GGTGGTGAA-GCTAAGCACT-AGCATCAAA-TAAGCACAAAAATC--T  1043

seq1  TCAAGAAAAACAAAAAGGCACTTTAAGGGGGAGGGGACACAAAACTGGCT  1100
      || |||||||  |||| |||||| |  ||||| ||||||||||||  |||
seq2  TC-AGAAAAAACAAAATGCACTTGA--GGGGA-GGGACACAAAACCTGCT  1089

seq1  CTAATGGGT  1109
      ||| |||||
seq2  CTATTGGGT  1098


seq1: chr10_31371040_31372129
seq2: B6Ng01-314O10.g_64_1128 (reverse)

seq1  TTCCTCAGCTTTTCTTTCCCTTCAGGGTCTGATGATTTTTTTTTTTCTTT  50
      ||||||||                ||||||||||| ||||||||||||||
seq2  TTCCTCAG----------------GGGTCTGATGA-TTTTTTTTTTCTTT  33

seq1  TAAAAACATTTTATTTTTATTTTGTGTACATTGGTGTCTTGTCTGCATGT  100
      ||||||||  |||||||   |||||||||| ||||||| |||||||||||
seq2  TAAAAACA--TTATTTT--ATTTGTGTACA-TGGTGTC-TGTCTGCATGT  77

seq1  ATGTCTGTTTGAGGGTTGTAGTCATCTCTCCAGTCCTAGCTTGATGACTT  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTTGAGGG-TGTAGTCATCTCTCCAGTCCTAGCTTGATGACTT  126

seq1  TTCTTTATAGGAAAATGAGCAAGACTAATATATTGAGGGAAAGCAAAAGT  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTC-TTATAGGAAAATGAGCAAGACTAATATATTGAGGGAAAGCAAAAGT  175

seq1  TCAGGTCAGAAGAATTTTTAGTAGTCACTCTGTGGATTTTGTTAAAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCAGAAGAATTTTTAGTAGTCACTCTGTGGATTTTGTTAAAGTAG  225

seq1  AAGTAGGATTCAATCTGCTTTCTTGAACATTTATTTCTACCATCAGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGATTCAATCTGCTTTCTTGAACATTTATTTCTACCATCAGAAGG  275

seq1  CCCCTGGGATGTTCTTTCCTGTTATTTTGGATTCCTTTATTCTAAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGATGTTCTTTCCTGTTATTTTGGATTCCTTTATTCTAAAAGAA  325

seq1  TGCAGCTGTAGTAGGTTGGCCTAATGCTGCTTGTATTCGAATGCTAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGTAGTAGGTTGGCCTAATGCTGCTTGTATTCGAATGCTAATTT  375

seq1  GGATCTCCCAAACTGCACAAGAGGCCAGGGGAACCTGCTCTCAGTTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCCCAAACTGCACAAGAGGCCAGGGGAACCTGCTCTCAGTTAATT  425

seq1  CTGATTGATAAATAAAGATGCCAACAGCCATTACTTGAGGAGAAGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGATAAATAAAGATGCCAACAGCCATTACTTGAGGAGAAGAGACA  475

seq1  TGGGTGGGGTTTAGGTTTCCCTGGGCTAGAGACCATGAAGAGGAAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGGTTTAGGTTTCCCTGGGCTAGAGACCATGAAGAGGAAGAGAG  525

seq1  AGAGAAAGAGTGTGGCCATGGGACAGAGAAGCAAGAGGAGTTACTATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAGTGTGGCCATGGGACAGAGAAGCAAGAGGAGTTACTATGGC  575

seq1  CTCTGGATCAAGAAAACATAGCTCAGAGGGCTCCCTGGTTGGAGCCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATCAAGAAAACATAGCTCAGAGGGCTCCCTGGTTGGAGCCAAGA  625

seq1  GCAATCCAGGTGAAGCCTAGTAAGTATTAACTTGGGTTATGGAAAGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCAGGTGAAGCCTAGTAAGTATTAACTTGGGTTATGGAAAGGAGG  675

seq1  TAGATTCTAACAGCATGGAGGGTAGGCAGTTGCCCAGCTATTGTGTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTAACAGCATGGAGGGTAGGCAGTTGCCCAGCTATTGTGTGGCA  725

seq1  TAAGACACTTTTTATATATAAAGGCTTTGTGCGTGTCTTTCAACCAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACTTTTTATATATAAAGGCTTTGTGCGTGTCTTTCAACCAGGAA  775

seq1  CATAAATGGTCTAAGGCAGGAAGGAACCCCACTCTGGGATTTATTATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGGTCTAAGGCAGGAAGGAACCCCACTCTGGGATTTATTATTTT  825

seq1  TTACTACATTCAGCAACCATTCTTTAAATCTCAAACTGAACAAAACCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACATTCAGCAACCATTCTTTAAATCTCAAACTGAACAAAACCAAA  875

seq1  AGCTCTCAATAGGTGTCCACACTGAGATAACAGACATTAGAATTAAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCAATAGGTGTCCACACTGAGATAACAGACATTAGAATTAAATAT  925

seq1  AAAATATTTTTAAATGGCTATCATACATACCCTTTAGTAGCAATAATACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTTAAATGGCTATCATACATACCCTTTAGTAGCAATAATACA  975

seq1  CAGGTATGGACAAATAAAACGACAATCTATGTACAGTAACATAGGGGTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGGACAAATAAAACGACAATCTATGTACAGTAACATAGGGGTGT  1025

seq1  GTGTGTGTGTGTTTGAATCAAATCTACATGAAAAGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTTGAATCAAATCTACATGAAAAGAATTC  1065


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