BAC Information

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BAC

Clone NameB6Ng01-315O17
Chromosome10 (Build37)
Map Location 100,801,444 - 100,903,650
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream geneMgat4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315O17.bB6Ng01-315O17.g
ACCGA106443GA106444
length1,1401,111
definitionB6Ng01-315O17.b B6Ng01-315O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,801,444 - 100,802,590)(100,902,540 - 100,903,650)
sequence
gaattcattgtttttctccttttcttcagttctgattttaaatgaagtgt
gcaatcatctgtgacatattttatgttgaagtgctatgaaatgatgctgc
cttccaaagccaagttattagtttcgggtagaaattaacatctgtctcct
tctgccttgcttagctcagtatttcttgtccatttctttgtatgtcatat
atagtgatgctaacagaatgcggtgcctcttcacacagtttctattttct
cagagttggtacatggctgttagattagcatatatattttttctatttta
aagcaattgtaaataatcattctactaatctatacttttatactaggtag
cttaattttggagttctatctagataacaaagaaaaattaggggaatgag
gagagacaactcagtgtatatgaggtcttcatatagaagcatgggatctg
agattggatccctagaactgattgaaaaagaaaaacaaaacaaagccaga
tgtggctacccttgaacctgtagtccaagactattggtggtggagacaag
aggatcattgagaattgctgcatgtcagctcagctccagactcagaggga
tattgcagaaagtgatagagcacagcacctttcattttcctttagtgttt
gtctgtccacacatgggcaggtcatcccaaacacacacaagcacgtacag
tacacacagctatcccattaacatttacgtgttgataaataaaacctgta
ccccctcttctaatcgttactttagtgttttgtacagaattcctccaatg
caagcttacacatttgcttttggttaacctaaaacactgaatagatccag
gtccataactcataggatctcagaagccctggagctgagttctggttcta
gaagccagcatagtagggataagcctggccagctggaccgtgtcctcata
tgccatatggtgctggtgacttgatttgttatctctactctgcctggacc
agtgtgatcaggatgtgactagttatcatatttgcatccatacaggaact
gggtttcttgctgcaagtagaatgatgcaattcctacttaggtacagcaa
tgaaagacaaggaatcatttaatccggtgtgccccagtca

gaattcacttctaaaaactcataaaaactttcaaacaaacatattgtatg
ataaattttgttattcgttccagcaaagactagatttttcactagcagtt
tccttaaaaatacctaaagtctttgcaaatctctgctgcagtcagaaata
catcttaaaattctttctctgtattaaatgaacatactttaagcagacta
aattatgctatgtagttaaatcctgtttaattataccaatataatacatg
agtcagccttacgtgtgtaactacaatttagaaaggatttgtatagattt
agaaaaattaatctattcaacaataatgaaatgttgttcatataccaata
atcacttgagtttactgagaatataaaaaatggataaacaaaagaaaaat
aatttaagtcagtaggcaatttttaagtaggcaatttataatttttttac
aagatagagccttctatgtaacttagattagccttgaacttggaaccgtt
ctttcttacctccctgtgaataagaaataatatcttactgctatcttcac
aacagttcagtttttgaaagcatattttaacatgtttggatgttctgttt
tgataatcatgagcaaccactgccctctgtgatttgtgaatgtttaaacc
aaatatcacattcaatattttctacttcagtgattatagatttgtttaat
cattgaccttcttgtgtgtgagagggcgtctgaaatatctaacacctata
gggtgcctctatccagttgcttatatagtttttatcttagaagacatcaa
tccacatgaccaagtgtctactcacctctaataacaaactgataacagac
caaattatagataccacaagagtccaacttggtgaacttttattaagttt
tatttttcttttttaatttttgttagaggtttagtagggttacttagagg
aatatagataagagattatatagagcagtagaaatgtctaaataattaca
tatcaacaaagccaaaatcagtgtgacagctcttgaactctgaatctaga
aacacacctgccaaaacttgtaatgcctcaataggcctggaaactgtctc
ttgcaagaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100801444_100802590
seq2: B6Ng01-315O17.b_46_1185

seq1  GAATTCATTGTTTTTCTCCTTTTCTTCAGTTCTGATTTTAAATGAAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTTCTCCTTTTCTTCAGTTCTGATTTTAAATGAAGTGT  50

seq1  GCAATCATCTGTGACATATTTTATGTTGAAGTGCTATGAAATGATGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATCTGTGACATATTTTATGTTGAAGTGCTATGAAATGATGCTGC  100

seq1  CTTCCAAAGCCAAGTTATTAGTTTCGGGTAGAAATTAACATCTGTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAGCCAAGTTATTAGTTTCGGGTAGAAATTAACATCTGTCTCCT  150

seq1  TCTGCCTTGCTTAGCTCAGTATTTCTTGTCCATTTCTTTGTATGTCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTGCTTAGCTCAGTATTTCTTGTCCATTTCTTTGTATGTCATAT  200

seq1  ATAGTGATGCTAACAGAATGCGGTGCCTCTTCACACAGTTTCTATTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGATGCTAACAGAATGCGGTGCCTCTTCACACAGTTTCTATTTTCT  250

seq1  CAGAGTTGGTACATGGCTGTTAGATTAGCATATATATTTTTTCTATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGGTACATGGCTGTTAGATTAGCATATATATTTTTTCTATTTTA  300

seq1  AAGCAATTGTAAATAATCATTCTACTAATCTATACTTTTATACTAGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTGTAAATAATCATTCTACTAATCTATACTTTTATACTAGGTAG  350

seq1  CTTAATTTTGGAGTTCTATCTAGATAACAAAGAAAAATTAGGGGAATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTTGGAGTTCTATCTAGATAACAAAGAAAAATTAGGGGAATGAG  400

seq1  GAGAGACAACTCAGTGTATATGAGGTCTTCATATAGAAGCATGGGATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAACTCAGTGTATATGAGGTCTTCATATAGAAGCATGGGATCTG  450

seq1  AGATTGGATCCCTAGAACTGATTGAAAAAGAAAAACAAAACAAAGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGATCCCTAGAACTGATTGAAAAAGAAAAACAAAACAAAGCCAGA  500

seq1  TGTGGCTACCCTTGAACCTGTAGTCCAAGACTATTGGTGGTGGAGACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTACCCTTGAACCTGTAGTCCAAGACTATTGGTGGTGGAGACAAG  550

seq1  AGGATCATTGAGAATTGCTGCATGTCAGCTCAGCTCCAGACTCAGAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCATTGAGAATTGCTGCATGTCAGCTCAGCTCCAGACTCAGAGGGA  600

seq1  TATTGCAGAAAGTGATAGAGCACAGCACCTTTCATTTTCCTTTAGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAGAAAGTGATAGAGCACAGCACCTTTCATTTTCCTTTAGTGTTT  650

seq1  GTCTGTCCACACATGGGCAGGTCATCCCAAACACACACAAGCACGTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCCACACATGGGCAGGTCATCCCAAACACACACAAGCACGTACAG  700

seq1  TACACACAGCTATCCCATTAACATTTACGTGTTGATAAATAAAACCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGCTATCCCATTAACATTTACGTGTTGATAAATAAAACCTGTA  750

seq1  CCCCCTCTTCTAATCGTTACTTTAGTGTTTTGTACAGAATTCCTCCAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCTTCTAATCGTTACTTTAGTGTTTTGTACAGAATTCCTCCAATG  800

seq1  CAAGCTTACACATTTGCTTTTGGTTAACCTAAAACACTGAATAGATCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTACACATTTGCTTTTGGTTAACCTAAAACACTGAATAGATCCAG  850

seq1  GTCCATAACTCATAGGATCTCAGAAGCCCTGGAGCTGAGTTCTGGTTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATAACTCATAGGATCTCAGAAGCCCTGGAGCTGAGTTCTGGTTCTA  900

seq1  GAAGCCAGCATAGTAGGGATAAGCCTGGCCAGCTGGACCGTGTCCTCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAGCCAGCATAGTAGGGATAAGCCTGGCCAGCTGGACCGTGTCCTC-AT  949

seq1  ATGCCATATGGTGCTGGTGACTTGATTTGTTATCTCTACCTCTGCCTGGA  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGCCATATGGTGCTGGTGACTTGATTTGTTATCTCTA-CTCTGCCTGGA  998

seq1  CCCAGTGTGAATCAGGATGTGACTAGTTATTCATATTTTGCATCCAATTA  1050
       |||||||| ||||||||||||||||||| ||||| ||||||||||  ||
seq2  -CCAGTGTG-ATCAGGATGTGACTAGTTA-TCATA-TTTGCATCCA--TA  1042

seq1  CAAGGGAAACTTGGGTTTCTGCCTGCAAGTAGATTGATGCA--TTCTACT  1098
      ||  ||||   |||||||||  ||||||||||| |||||||  | |||||
seq2  CA--GGAA--CTGGGTTTCTTGCTGCAAGTAGAATGATGCAATTCCTACT  1088

seq1  TA-GTACAGC-ATGAAAGACAA-GAATCATTT-ATCCCGTGTGCCCCAAG  1144
      || ||||||| ||||||||||| ||||||||| |||| ||||||||| ||
seq2  TAGGTACAGCAATGAAAGACAAGGAATCATTTAATCCGGTGTGCCCC-AG  1137

seq1  TCA  1147
      |||
seq2  TCA  1140


seq1: chr10_100902540_100903650
seq2: B6Ng01-315O17.g_63_1173 (reverse)

seq1  ACTTCCTGCAAGAGACAGTTTCCA-GCCTATTGAGCCATTTACAAGTTTT  49
      ||||| |||||||||||||||||| |||||||||| || |||||||||||
seq2  ACTTCTTGCAAGAGACAGTTTCCAGGCCTATTGAGGCA-TTACAAGTTTT  49

seq1  -GCA-GTGTG-TTCTAGAATTCCAGAGTTCAAGAGCTGTCACACTGATTT  96
       ||| ||||| |||||||  | ||||||||||||||||||||||||||||
seq2  GGCAGGTGTGTTTCTAGA--TTCAGAGTTCAAGAGCTGTCACACTGATTT  97

seq1  TGGCTTTGTTGATAATGTAATTATTTAGACATTTCTACTGCTCTATATAA  146
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTGTTGAT-ATGTAATTATTTAGACATTTCTACTGCTCTATATAA  146

seq1  TCTCTTATCTATATTCCTCTAAGTAACCCTACTAAACCTCTAACAAAAAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATCTATATTCCTCTAAGTAACCCTACTAAACCTCTAACAAAAAT  196

seq1  TAAAAAAGAAAAATAAAACTTAATAAAAGTTCACCAAGTTGGACTCTTGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGAAAAATAAAACTTAATAAAAGTTCACCAAGTTGGACTCTTGT  246

seq1  GGTATCTATAATTTGGTCTGTTATCAGTTTGTTATTAGAGGTGAGTAGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTATAATTTGGTCTGTTATCAGTTTGTTATTAGAGGTGAGTAGAC  296

seq1  ACTTGGTCATGTGGATTGATGTCTTCTAAGATAAAAACTATATAAGCAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTCATGTGGATTGATGTCTTCTAAGATAAAAACTATATAAGCAAC  346

seq1  TGGATAGAGGCACCCTATAGGTGTTAGATATTTCAGACGCCCTCTCACAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGAGGCACCCTATAGGTGTTAGATATTTCAGACGCCCTCTCACAC  396

seq1  ACAAGAAGGTCAATGATTAAACAAATCTATAATCACTGAAGTAGAAAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGGTCAATGATTAAACAAATCTATAATCACTGAAGTAGAAAATA  446

seq1  TTGAATGTGATATTTGGTTTAAACATTCACAAATCACAGAGGGCAGTGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTGATATTTGGTTTAAACATTCACAAATCACAGAGGGCAGTGGT  496

seq1  TGCTCATGATTATCAAAACAGAACATCCAAACATGTTAAAATATGCTTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGATTATCAAAACAGAACATCCAAACATGTTAAAATATGCTTTC  546

seq1  AAAAACTGAACTGTTGTGAAGATAGCAGTAAGATATTATTTCTTATTCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGAACTGTTGTGAAGATAGCAGTAAGATATTATTTCTTATTCAC  596

seq1  AGGGAGGTAAGAAAGAACGGTTCCAAGTTCAAGGCTAATCTAAGTTACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTAAGAAAGAACGGTTCCAAGTTCAAGGCTAATCTAAGTTACAT  646

seq1  AGAAGGCTCTATCTTGTAAAAAAATTATAAATTGCCTACTTAAAAATTGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTCTATCTTGTAAAAAAATTATAAATTGCCTACTTAAAAATTGC  696

seq1  CTACTGACTTAAATTATTTTTCTTTTGTTTATCCATTTTTTATATTCTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGACTTAAATTATTTTTCTTTTGTTTATCCATTTTTTATATTCTCA  746

seq1  GTAAACTCAAGTGATTATTGGTATATGAACAACATTTCATTATTGTTGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTCAAGTGATTATTGGTATATGAACAACATTTCATTATTGTTGAA  796

seq1  TAGATTAATTTTTCTAAATCTATACAAATCCTTTCTAAATTGTAGTTACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAATTTTTCTAAATCTATACAAATCCTTTCTAAATTGTAGTTACA  846

seq1  CACGTAAGGCTGACTCATGTATTATATTGGTATAATTAAACAGGATTTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAAGGCTGACTCATGTATTATATTGGTATAATTAAACAGGATTTAA  896

seq1  CTACATAGCATAATTTAGTCTGCTTAAAGTATGTTCATTTAATACAGAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGCATAATTTAGTCTGCTTAAAGTATGTTCATTTAATACAGAGA  946

seq1  AAGAATTTTAAGATGTATTTCTGACTGCAGCAGAGATTTGCAAAGACTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTAAGATGTATTTCTGACTGCAGCAGAGATTTGCAAAGACTTT  996

seq1  AGGTATTTTTAAGGAAACTGCTAGTGAAAAATCTAGTCTTTGCTGGAACG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTTTAAGGAAACTGCTAGTGAAAAATCTAGTCTTTGCTGGAACG  1046

seq1  AATAACAAAATTTATCATACAATATGTTTGTTTGAAAGTTTTTATGAGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAAATTTATCATACAATATGTTTGTTTGAAAGTTTTTATGAGTT  1096

seq1  TTTAGAAGTGAATTC  1111
      |||||||||||||||
seq2  TTTAGAAGTGAATTC  1111


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