BAC Information

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BAC

Clone NameB6Ng01-316D04
Chromosome10 (Build37)
Map Location 86,812,959 - 86,966,899
singlet/doubletdoublet
Overlap geneAscl1
Upstream geneSyn3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik
Downstream genePah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316D04.bB6Ng01-316D04.g
ACCGA106651GA106652
length4611,136
definitionB6Ng01-316D04.b B6Ng01-316D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,966,439 - 86,966,899)(86,812,959 - 86,814,104)
sequence
ggatgagaaaccagtctagttacatgtgagtatcctgtttctctagcaaa
gctgtggtgagcaatggtgtttcattccattgcacgctagtcacgatgca
ccaaagacctggcatttaccctggtccctagcactaaccatttgactcca
gaataccttctgactagcaggacccataatttgagcaccaccttcattgc
ccacacaatgaaggcggaggagggtgatgtcatttgcccctggaggttat
tttagaaaaaagactagcaaaaaaaaattaatatatgtatgagttcaaag
gggaacatgactgtcactagagggttgtgtggtccagtttgtattttcta
cactgtcagaacatctgcttaagagagagactctaggtaatttgagaatg
catgcaattgtaactcattgattttacctgaaatttacatgtgtgtgtgt
ggggggggtgg
gaattccaaattatcacttggaactctgaggctttaatttttttaaattt
tttaaaatttttttatttttttgtctatagaggaattgaaaatggaaaaa
ataagaatttataatgtttgtccctgaaagagtccacttgcaagaaagca
atgataaaatcaatttcagtctaattctatcccagggtatagcttttact
attctcattgattttacattattaaaagcagtgataaagtaataacacca
gcattattctattatattgcattacattttattatattatgttatatata
gctacagcagcccaactagacacacagctcagccctcacttcccctgaca
cgcttcctttatttcagaaagcaggaaatgaatgtgtacatggctagacg
tgttaaggtgtgtaaagtttacagtgttcattttgtgttacagtttggaa
ctaccatatgcatgcatccttccctaacatcttacaatggaaaattccaa
attatacacaagttgagagaattattgagtagtgatcatattcttagtcc
tatgccctacattttccatatttggacttctctaaaatcttttctgttac
ctacccatccgtcccttttatgttttgatgcatttaaatgcagatgctga
tacagtagacttagccctgaactctgcctacagagtttattattttgcta
ttagctgaaagttgacacactttaccattgctctctggcttggttatttt
tggggagtcggtatcttttgcagatacttcacctttcccagaattcatta
gaatttttatcctggtttcttctctttccctaattttagttttttagccc
atattacttccagtttcatttattttttctctttatttttcttacctcta
gttctgtgtcttttctctaaaactcttgcaagttgaacaccacaggaaga
actaaaactgggcttgtgcctagtttagagcaacaaaagctttcggcagc
taacaccaggaaatttagagcgtgagagcaacatgtggccactcttgtgc
ggtggtgaaggagaccccgagtcctctcggtcttgctgaagtaggttcag
gcaagcgcactcagttacgcatgtttaaaattcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_86966439_86966899
seq2: B6Ng01-316D04.b_54_514 (reverse)

seq1  CCACCCCCCCCACACACACACATGTAAATTTCAGGTAAAATCAATGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCCCACACACACACATGTAAATTTCAGGTAAAATCAATGAGTT  50

seq1  ACAATTGCATGCATTCTCAAATTACCTAGAGTCTCTCTCTTAAGCAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGCATGCATTCTCAAATTACCTAGAGTCTCTCTCTTAAGCAGATG  100

seq1  TTCTGACAGTGTAGAAAATACAAACTGGACCACACAACCCTCTAGTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACAGTGTAGAAAATACAAACTGGACCACACAACCCTCTAGTGACA  150

seq1  GTCATGTTCCCCTTTGAACTCATACATATATTAATTTTTTTTTGCTAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTCCCCTTTGAACTCATACATATATTAATTTTTTTTTGCTAGTC  200

seq1  TTTTTTCTAAAATAACCTCCAGGGGCAAATGACATCACCCTCCTCCGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTAAAATAACCTCCAGGGGCAAATGACATCACCCTCCTCCGCCT  250

seq1  TCATTGTGTGGGCAATGAAGGTGGTGCTCAAATTATGGGTCCTGCTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGTGGGCAATGAAGGTGGTGCTCAAATTATGGGTCCTGCTAGTC  300

seq1  AGAAGGTATTCTGGAGTCAAATGGTTAGTGCTAGGGACCAGGGTAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTATTCTGGAGTCAAATGGTTAGTGCTAGGGACCAGGGTAAATGC  350

seq1  CAGGTCTTTGGTGCATCGTGACTAGCGTGCAATGGAATGAAACACCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTTGGTGCATCGTGACTAGCGTGCAATGGAATGAAACACCATTG  400

seq1  CTCACCACAGCTTTGCTAGAGAAACAGGATACTCACATGTAACTAGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACAGCTTTGCTAGAGAAACAGGATACTCACATGTAACTAGACTG  450

seq1  GTTTCTCATCC  461
      |||||||||||
seq2  GTTTCTCATCC  461

seq1: chr10_86812959_86814104
seq2: B6Ng01-316D04.g_67_1202

seq1  GAATTCCAAATTATCACTTGGAACTCTGAGGCTTTAATTTTTTTAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATTATCACTTGGAACTCTGAGGCTTTAATTTTTTTAAATTT  50

seq1  TTTAAAATTTTTTTATTTTTTTGTCTATAGAGGAATTGAAAATGGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTTTTTTATTTTTTTGTCTATAGAGGAATTGAAAATGGAAAAA  100

seq1  ATAAGAATTTATAATGTTTGTCCCTGAAAGAGTCCACTTGCAAGAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATTTATAATGTTTGTCCCTGAAAGAGTCCACTTGCAAGAAAGCA  150

seq1  ATGATAAAATCAATTTCAGTCTAATTCTATCCCAGGGTATAGCTTTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAAATCAATTTCAGTCTAATTCTATCCCAGGGTATAGCTTTTACT  200

seq1  ATTCTCATTGATTTTACATTATTAAAAGCAGTGATAAAGTAATAACACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATTGATTTTACATTATTAAAAGCAGTGATAAAGTAATAACACCA  250

seq1  GCATTATTCTATTATATTGCATTACATTTTATTATATTATGTTATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATTCTATTATATTGCATTACATTTTATTATATTATGTTATATATA  300

seq1  GCTACAGCAGCCCAACTAGACACACAGCTCAGCCCTCACTTCCCCTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGCAGCCCAACTAGACACACAGCTCAGCCCTCACTTCCCCTGACA  350

seq1  CGCTTCCTTTATTTCAGAAAGCAGGAAATGAATGTGTACATGGCTAGACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCCTTTATTTCAGAAAGCAGGAAATGAATGTGTACATGGCTAGACG  400

seq1  TGTTAAGGTGTGTAAAGTTTACAGTGTTCATTTTGTGTTACAGTTTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGGTGTGTAAAGTTTACAGTGTTCATTTTGTGTTACAGTTTGGAA  450

seq1  CTACCATATGCATGCATCCTTCCCTAACATCTTACAATGGAAAATTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATATGCATGCATCCTTCCCTAACATCTTACAATGGAAAATTCCAA  500

seq1  ATTATACACAAGTTGAGAGAATTATTGAGTAGTGATCATATTCTTAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACACAAGTTGAGAGAATTATTGAGTAGTGATCATATTCTTAGTCC  550

seq1  TATGCCCTACATTTTCCATATTTGGACTTCTCTAAAATCTTTTCTGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTACATTTTCCATATTTGGACTTCTCTAAAATCTTTTCTGTTAC  600

seq1  CTACCCATCCGTCCCTTTTATGTTTTGATGCATTTAAATGCAGATGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATCCGTCCCTTTTATGTTTTGATGCATTTAAATGCAGATGCTGA  650

seq1  TACAGTAGACTTAGCCCTGAACTCTGCCTACAGAGTTTATTATTTTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGACTTAGCCCTGAACTCTGCCTACAGAGTTTATTATTTTGCTA  700

seq1  TTAGCTGAAAGTTGACACACTTTACCATTGCTCTCTGGCTTGGTTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAAAGTTGACACACTTTACCATTGCTCTCTGGCTTGGTTATTTT  750

seq1  TGGGGAGTCGGTATCTTTTGCAGATACTTCACCTTTCCCAGAATTCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGTCGGTATCTTTTGCAGATACTTCACCTTTCCCAGAATTCATTA  800

seq1  GAATTTTTATCCTGGTTTCTTCTCTTTCCCTAATTTTAGTTTTTTAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTATCCTGGTTTCTTCTCTTTCCCTAATTTTAGTTTTTTAGCCC  850

seq1  ATATTACTTCCAGTTTCATTTA-TTTTTCTCTTTATTTTTCTTACCTCTA  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATTACTTCCAGTTTCATTTATTTTTTCTCTTTATTTTTCTTACCTCTA  900

seq1  GTTCTGTGTCTTTTCTCTAAAACTCTTGCAAGTTGAACACCACAGGAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGTCTTTTCTCTAAAACTCTTGCAAGTTGAACACCACAGGAAGA  950

seq1  ACTAAAAACTGGCTTGTGCCTAGTTAAGAGCA--CAAAGCTTTCCGGCAG  997
      |||||||   ||||||||||||||| ||||||   |||||||| ||||||
seq2  ACTAAAACTGGGCTTGTGCCTAGTTTAGAGCAACAAAAGCTTT-CGGCAG  999

seq1  CT-ACACCAGGGAATTTAAGAGCGTGAGAGGCAACATTGTGGCCCACTCT  1046
      || |||||||| ||||| ||||||||||| |||||| ||||| |||||||
seq2  CTAACACCAGGAAATTT-AGAGCGTGAGA-GCAACA-TGTGG-CCACTCT  1045

seq1  TTGTTGCGGTGGTGAAAGGAGACCCCGAGTCCTCTC-GTCCTGCTGAAGG  1095
      |   |||||||||| ||||||||||||||||||||| ||| |||||||| 
seq2  T--GTGCGGTGGTG-AAGGAGACCCCGAGTCCTCTCGGTCTTGCTGAAGT  1092

seq1  TAGTTCAGGCAAAAGCGCCTTTCCCATGTACGCCATGGTTTAAAATTCAA  1145
        ||||||||  ||||||    | ||  |||| ||| |||||||||||||
seq2  AGGTTCAGGC--AAGCGC---ACTCAGTTACG-CAT-GTTTAAAATTCAA  1135

seq1  G  1146
      |
seq2  G  1136