BAC Information

Click to search

BAC

Clone NameB6Ng01-316I15
Chromosome10 (Build37)
Map Location 64,301,239 - 64,423,726
singlet/doubletdoublet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316I15.bB6Ng01-316I15.g
ACCGA106908GA106909
length1,0771,093
definitionB6Ng01-316I15.b B6Ng01-316I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,422,659 - 64,423,726)(64,301,239 - 64,302,333)
sequence
gaattcatacattaaagaaaacaacacaatcaaataaatgtctctctgga
atgtgattgtaacgattgagcttagactcaggtcagagatagagaatcaa
taatgattcgtttcctctctctgcccctgatgataacctttgcttttttt
gtaactgcatttacttcaagaacatcaatacattaagagaaagttcagtg
ctaggatgtagaaggatgagatgatgctaatacataaggatactggtaca
gcttcttaaaaagtgttccagtaatgtggcttcctaaattgttcatcacg
ctttaacttaaatttataatcttggtacatgtccttctcaaagtcactga
taactgaatccaatataggcatcaaatattattttattactgtgtctgca
ctagagaaataatctaatgttattaaaagatgagcacaaaccactgggca
ttatttctaccatgaaaatttaaaagcagattgaaactcaaggccaccaa
agaatttatgcaagttcccttaactaaaaatatttataatatactatttc
aaaaacaacatttagatttttttatctcaggcctgaaagttttgagttat
aaaactaaatatgtagaaaatggagactaataaatagtaataaaataatt
gaattaatgtatgcttttatattcccttattttaaaattttacagaactc
atttcagaattctctctgtacacattataaggtttaaaagctgttccata
tgactgtgaatttcttaaggtagtattcaaatgctgatatattgcttaat
ctctgaagttaaaaataatatatatatgcatatgtgtgtatatacatata
taagtatacacatacacacatgcactcacacacacataaatatgtatatt
aaaaatttttaaaaagaaacctagaaggtgttcttgcttaattacatata
ccttatactgtgacagagtttgtcctatgttaaattcatatgaagaaaaa
gtactggagccacaccctgggttgttctgtttctaggtggtgttctggtg
gtgtaaacagtggaagtaacaggcagt

gaattctctggaccaatggtgtgattatatctgctgaacaggtccacagt
ggcacaggagcgtggttgtgtaatagatttgcagaagattgttcaaagag
cttattgtatattctgtttgtactttaattatacataatataggattttt
aaaaaatcttataatttcaaaataaatgaggcaggaaaatggatttctct
taaggtttattataggcttgttccataaatttatggtcataaagcctttg
tgaatccaccttttcttaagactaggctacacccagggtaaattatattt
ctgtataagcatagcagttatgagtattaaataatatattgtcgttcaca
cagcatctttaagtttgtatttaggtcttttaaacaaaatatttgatatt
attgtttataatttttctctccttaattttggaaagtagagaatgagatt
tgaaacatttaaatagtttatgccaggcatggtgattatgagaaaatcac
aggttttctggtctcgtgcacacacaatttctagaacagcacacttatga
tgtagattaaagctctacagactcagtatagaattggtagtataagtctc
ccctgggaaaatgatttatggaacctgagatcatgtcatgaaatcattcc
tgtaggcttgtttttacaaaaccccctttaataaatgtaattaaatattt
taacctcccttctggcccacctcccatcagaagcagtggaaaagaaaggt
taataggggaaaggaggatgttgacctgtttagaactagttatttggggg
tgaatccaatctgcattttcaaaaattagcagtttatttcatgtgaatca
acagtagtagctcaatccactcacaaacaccatttgtgaatcaggaatgg
tagactgatacagaagaaactgcaaggctctgccaatcagcctgagtctg
aggaaatggcaagaagccattggattattaccagatgttcgttggtgcat
ttgtctctacaagttatgacaaatgatgatcagcaagagtgataggcaaa
tttaatatcacaccagtgtcatcataagaatcagtatcagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64422659_64423726
seq2: B6Ng01-316I15.b_47_1123 (reverse)

seq1  ACTGCCTGTTACTTCCACTG-TTACAC--ACAGAACAC--ACTAGAAACA  45
      |||||||||||||||||||| ||||||   ||||||||   |||||||||
seq2  ACTGCCTGTTACTTCCACTGTTTACACCACCAGAACACCACCTAGAAACA  50

seq1  GAACAA-CCAGGGTGTGGCT-CAGTACTTTT--CTCATATGAATTTAACA  91
      |||||| ||||||||||||| ||||||||||   ||||||||||||||||
seq2  GAACAACCCAGGGTGTGGCTCCAGTACTTTTTCTTCATATGAATTTAACA  100

seq1  TAGGACAAACTCTGTCACAGTATAAGGTATATGTAATTAAGCAAGAACAC  141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAAACTCTGTCACAGTATAAGGTATATGTAATTAAGCAAGAACAC  150

seq1  CTTCTAGGTTTCTTTTTAAAAATTTTTAATATACATATTTATGTGTGTGT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGTTTCTTTTTAAAAATTTTTAATATACATATTTATGTGTGTGT  200

seq1  GAGTGCATGTGTGTATGTGTATACTTATATATGTATATACACACATATGC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCATGTGTGTATGTGTATACTTATATATGTATATACACACATATGC  250

seq1  ATATATATATTATTTTTAACTTCAGAGATTAAGCAATATATCAGCATTTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATTATTTTTAACTTCAGAGATTAAGCAATATATCAGCATTTG  300

seq1  AATACTACCTTAAGAAATTCACAGTCATATGGAACAGCTTTTAAACCTTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTACCTTAAGAAATTCACAGTCATATGGAACAGCTTTTAAACCTTA  350

seq1  TAATGTGTACAGAGAGAATTCTGAAATGAGTTCTGTAAAATTTTAAAATA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTACAGAGAGAATTCTGAAATGAGTTCTGTAAAATTTTAAAATA  400

seq1  AGGGAATATAAAAGCATACATTAATTCAATTATTTTATTACTATTTATTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATATAAAAGCATACATTAATTCAATTATTTTATTACTATTTATTA  450

seq1  GTCTCCATTTTCTACATATTTAGTTTTATAACTCAAAACTTTCAGGCCTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATTTTCTACATATTTAGTTTTATAACTCAAAACTTTCAGGCCTG  500

seq1  AGATAAAAAAATCTAAATGTTGTTTTTGAAATAGTATATTATAAATATTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAAAATCTAAATGTTGTTTTTGAAATAGTATATTATAAATATTT  550

seq1  TTAGTTAAGGGAACTTGCATAAATTCTTTGGTGGCCTTGAGTTTCAATCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAAGGGAACTTGCATAAATTCTTTGGTGGCCTTGAGTTTCAATCT  600

seq1  GCTTTTAAATTTTCATGGTAGAAATAATGCCCAGTGGTTTGTGCTCATCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAATTTTCATGGTAGAAATAATGCCCAGTGGTTTGTGCTCATCT  650

seq1  TTTAATAACATTAGATTATTTCTCTAGTGCAGACACAGTAATAAAATAAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAACATTAGATTATTTCTCTAGTGCAGACACAGTAATAAAATAAT  700

seq1  ATTTGATGCCTATATTGGATTCAGTTATCAGTGACTTTGAGAAGGACATG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGCCTATATTGGATTCAGTTATCAGTGACTTTGAGAAGGACATG  750

seq1  TACCAAGATTATAAATTTAAGTTAAAGCGTGATGAACAATTTAGGAAGCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGATTATAAATTTAAGTTAAAGCGTGATGAACAATTTAGGAAGCC  800

seq1  ACATTACTGGAACACTTTTTAAGAAGCTGTACCAGTATCCTTATGTATTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTGGAACACTTTTTAAGAAGCTGTACCAGTATCCTTATGTATTA  850

seq1  GCATCATCTCATCCTTCTACATCCTAGCACTGAACTTTCTCTTAATGTAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATCTCATCCTTCTACATCCTAGCACTGAACTTTCTCTTAATGTAT  900

seq1  TGATGTTCTTGAAGTAAATGCAGTTACAAAAAAAGCAAAGGTTATCATCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTCTTGAAGTAAATGCAGTTACAAAAAAAGCAAAGGTTATCATCA  950

seq1  GGGGCAGAGAGAGGAAACGAATCATTATTGATTCTCTATCTCTGACCTGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAGAGAGGAAACGAATCATTATTGATTCTCTATCTCTGACCTGA  1000

seq1  GTCTAAGCTCAATCGTTACAATCACATTCCAGAGAGACATTTATTTGATT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGCTCAATCGTTACAATCACATTCCAGAGAGACATTTATTTGATT  1050

seq1  GTGTTGTTTTCTTTAATGTATGAATTC  1068
      |||||||||||||||||||||||||||
seq2  GTGTTGTTTTCTTTAATGTATGAATTC  1077


seq1: chr10_64301239_64302333
seq2: B6Ng01-316I15.g_69_1161

seq1  GAATTCTCTGGACCAATGGTGTGATTATATCTGCTGAACAGGTCCACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGACCAATGGTGTGATTATATCTGCTGAACAGGTCCACAGT  50

seq1  GGCACAGGAGCGTGGTTGTGTAATAGATTTGCAGAAGATTGTTCAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGAGCGTGGTTGTGTAATAGATTTGCAGAAGATTGTTCAAAGAG  100

seq1  CTTATTGTATATTCTGTTTGTACTTTAATTATACATAATATAGGATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGTATATTCTGTTTGTACTTTAATTATACATAATATAGGATTTTT  150

seq1  AAAAAATCTTATAATTTCAAAATAAATGAGGCAGGAAAATGGATTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTTATAATTTCAAAATAAATGAGGCAGGAAAATGGATTTCTCT  200

seq1  TAAGGTTTATTATAGGCTTGTTCCATAAATTTATGGTCATAAAGCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTATTATAGGCTTGTTCCATAAATTTATGGTCATAAAGCCTTTG  250

seq1  TGAATCCACCTTTTCTTAAGACTAGGCTACACCCAGGGTAAATTATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCACCTTTTCTTAAGACTAGGCTACACCCAGGGTAAATTATATTT  300

seq1  CTGTATAAGCATAGCAGTTATGAGTATTAAATAATATATTGTCGTTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAAGCATAGCAGTTATGAGTATTAAATAATATATTGTCGTTCACA  350

seq1  CAGCATCTTTAAGTTTGTATTTAGGTCTTTTAAACAAAATATTTGATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTTTAAGTTTGTATTTAGGTCTTTTAAACAAAATATTTGATATT  400

seq1  ATTGTTTATAATTTTTCTCTCCTTAATTTTGGAAAGTAGAGAATGAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTATAATTTTTCTCTCCTTAATTTTGGAAAGTAGAGAATGAGATT  450

seq1  TGAAACATTTAAATAGTTTATGCCAGGCATGGTGATTATGAGAAAATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATTTAAATAGTTTATGCCAGGCATGGTGATTATGAGAAAATCAC  500

seq1  AGGTTTTCTGGTCTCGTGCACACACAATTTCTAGAACAGCACACTTATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTCTGGTCTCGTGCACACACAATTTCTAGAACAGCACACTTATGA  550

seq1  TGTAGATTAAAGCTCTACAGACTCAGTATAGAATTGGTAGTATAAGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTAAAGCTCTACAGACTCAGTATAGAATTGGTAGTATAAGTCTC  600

seq1  CCCTGGGAAAATGATTTATGGAACCTGAGATCATGTCATGAAATCATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAAAATGATTTATGGAACCTGAGATCATGTCATGAAATCATTCC  650

seq1  TGTAGGCTTGTTTTTACAAAACCCCCTTTAATAAATGTAATTAAATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTTGTTTTTACAAAACCCCCTTTAATAAATGTAATTAAATATTT  700

seq1  TAACCTCCCTTCTGGCCCACCTCCCATCAGAAGCAGTGGAAAAGAAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCCCTTCTGGCCCACCTCCCATCAGAAGCAGTGGAAAAGAAAGGT  750

seq1  TAATAGGGGAAAGGAGGATGTTGACCTGTTTAGAACTAGTTATTTGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGGGAAAGGAGGATGTTGACCTGTTTAGAACTAGTTATTTGGGGG  800

seq1  TGAATCCAATCTGCATTTTCAAAAATTAGCAGTTTATTTCATGTGAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCAATCTGCATTTTCAAAAATTAGCAGTTTATTTCATGTGAATCA  850

seq1  ACAGTAGTAGCTCAATCCACTCACAAACACCATTTGTGAATCAGGAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGTAGCTCAATCCACTCACAAACACCATTTGTGAATCAGGAATGG  900

seq1  TAGACTGATACAGAAGAAACTGCAAGGCTCTGCCAATCAGCCTGAGTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGATACAGAAGAAACTGCAAGGCTCTGCCAATCAGCCTGAGTCTG  950

seq1  AGGAAATGGCAAGAAGCCATTGGATTATTACCAGATGTTCGTTGGTGCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGCAAGAAGCCATTGGATTATTACCAGATGTTCGTTGGTGCAT  1000

seq1  TTGTCTCTACAAAGTTATGACAAATGATGATCAGCAAAGAGTGATAAGGC  1050
      |||||||||| |||||||||||||||||||||||| ||||||||| ||||
seq2  TTGTCTCTAC-AAGTTATGACAAATGATGATCAGC-AAGAGTGAT-AGGC  1047

seq1  AAA-TTAATATCACACCAGTGTCATCATAAAGATCAGTATCAGCAA  1095
      ||| ||||||||||||||||||||||||||  ||||||||||||||
seq2  AAATTTAATATCACACCAGTGTCATCATAAGAATCAGTATCAGCAA  1093


| Home | SequenceCutter | Blast | Download |