BAC Information

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BAC

Clone NameB6Ng01-317C03
Chromosome10 (Build37)
Map Location 17,240,298 - 17,367,135
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317C03.bB6Ng01-317C03.g
ACCGA107354GA107355
length1,1241,126
definitionB6Ng01-317C03.b B6Ng01-317C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,240,298 - 17,241,451)(17,366,001 - 17,367,135)
sequence
gaattccttaagatagcactactaatcctgtacatctcaagagaagaaag
aaaataaatggatctcagacagtaagtcttccatgaattttaagaggcat
ttggacagaaaaagctgtcgtctgctgagctccaagtaggatcctggaca
aaatcctcttatatccagtctcccacgtgttctctcttcccagccattac
agtggctgttttatttgattgtaacaatttattcaagtctgtttcctctc
ttaggaccattttgtctcctctctaggacactggccttgtgaatatagct
gtgtcttttttccccccaatctctagttccacagtccagtatgatgccta
gaacacggtaaaaattcaataattcttgctgaatgcctcagtgaaagggt
tggggtaatggatgggcagacagacagatgctatgtagaataacattgtt
ttgaggacaaaggttatattttgacaaaactaatttagtgttttctgaag
catatttttggagtccaaatgactattcttgatggaatctctctaaacag
gccctcatttttgcttagaccagatcattctgactgacaaatagagtttt
tcttctttgtttaaaagtcttggcagaaatgtatgactgccgcagctatg
gattctttcgtccccttatatcctctgggaaaagggcctactttccaggg
gcaatcatagtagatcttccagaagccataaaactaataaggcaataagg
acatctaaactccagcagttttgaagaaaatgacttcttaaaactctgtt
tcttttagagttgcatgagatcagcatggtaggaaaggttgacaaagtag
acagggtcagaggtatatgcatttctgtgaagaaggacttaattcacaag
gaattttactaaaatcaatgcagatccaccaactgtatgactgcaaattt
gcttagaatttaatcattgttgaaatttagtatttctgacttcctgagaa
tagtatttccagagacccagattattccaatctggatattttagatttgt
cacctctgtagtgaaaaaaatcgatgacataataaacatgaaacatttat
ttatgttacacagaactgatagtt
gaattccatgtgtgcacagaggtcgcgatcagtcaactatgacagattca
gagcccatcagtggagtcaagaagagactaggaatgagtcagagtgatcc
tcaattgtttctgcaagatttttgaacagggagcagatatggaaaattgt
atgcatttaaagaataggcttctaagagagagaaatgtttatcaagcagg
gatatggtcacagaaagtttgaatcctcttgcatatttctgaataaagcc
gtgaagagatagaggaagcagcagggcaaactgagtctgtgtggggaaag
ttgaagtaaaaatagttccacggaatgagttgaatgtatttgcagtaaag
ggaatgtttatggtagagtatatgtgtggacttccattcctctcttaaga
atttaatgatgattgggtgtctgattgaagctgtgacattttaagagaga
ttaagaaaggaaaaataagaggtgttccccaacttgccagagctttccag
tcttgttggggagccttcatgcagtaagactagtgaaagtgaaggtgtaa
acacataattgaaattgttgttttctcacggccctcagctcttgtgccta
tagtaaagtccatcccttcctttatgacaagccatgagtattagtgagac
cacaagcatttaccctcattaactcagttaatcatcatacaactgaggac
ggaagggttccagccggggttgcacagctttgaagctggagcgttgggag
cagaacctcaccctgtaggtccagagtccacagtgtagggtaatgatgaa
attcttccttgtaaactcctataaagttgtatcccaagcataagcatgta
tttattttcctttcccagagttttaatgttccatacaatttatagttttt
agacttaggagcatctgctagcttgcagaatatgctatggatggataact
aacctccctcgccgggccagcaaagacgccagcttgttttatagattgtt
ggggaagtctcttactgaaatttacctctgtaataaactattcagtgctc
agttaggcaccccttcttttacttgcacatatgtactgtgcacatacgtg
cttgcatgtcactgaacatgtgcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17240298_17241451
seq2: B6Ng01-317C03.b_47_1170

seq1  GAATTCCTTAAGATAGCACTACTAATCCTGTACATCTCAAGAGAAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGATAGCACTACTAATCCTGTACATCTCAAGAGAAGAAAG  50

seq1  AAAATAAATGGATCTCAGACAGTAAGTCTTCCATGAATTTTAAGAGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATGGATCTCAGACAGTAAGTCTTCCATGAATTTTAAGAGGCAT  100

seq1  TTGGACAGAAAAAGCTGTCGTCTGCTGAGCTCCAAGTAGGATCCTGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGAAAAAGCTGTCGTCTGCTGAGCTCCAAGTAGGATCCTGGACA  150

seq1  AAATCCTCTTATATCCAGTCTCCCACGTGTTCTCTCTTCCCAGCCATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCTTATATCCAGTCTCCCACGTGTTCTCTCTTCCCAGCCATTAC  200

seq1  AGTGGCTGTTTTATTTGATTGTAACAATTTATTCAAGTCTGTTTCCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGTTTTATTTGATTGTAACAATTTATTCAAGTCTGTTTCCTCTC  250

seq1  TTAGGACCATTTTGTCTCCTCTCTAGGACACTGGCCTTGTGAATATAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACCATTTTGTCTCCTCTCTAGGACACTGGCCTTGTGAATATAGCT  300

seq1  GTGTCTTTTTTCCCCCCAATCTCTAGTTCCACAGTCCAGTATGATGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTTTTCCCCCCAATCTCTAGTTCCACAGTCCAGTATGATGCCTA  350

seq1  GAACACGGTAAAAATTCAATAATTCTTGCTGAATGCCTCAGTGAAAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGGTAAAAATTCAATAATTCTTGCTGAATGCCTCAGTGAAAGGGT  400

seq1  TGGGGTAATGGATGGGCAGACAGACAGATGCTATGTAGAATAACATTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTAATGGATGGGCAGACAGACAGATGCTATGTAGAATAACATTGTT  450

seq1  TTGAGGACAAAGGTTATATTTTGACAAAACTAATTTAGTGTTTTCTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGACAAAGGTTATATTTTGACAAAACTAATTTAGTGTTTTCTGAAG  500

seq1  CATATTTTTGGAGTCCAAATGACTATTCTTGATGGAATCTCTCTAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTGGAGTCCAAATGACTATTCTTGATGGAATCTCTCTAAACAG  550

seq1  GCCCTCATTTTTGCTTAGACCAGATCATTCTGACTGACAAATAGAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCATTTTTGCTTAGACCAGATCATTCTGACTGACAAATAGAGTTTT  600

seq1  TCTTCTTTGTTTAAAAGTCTTGGCAGAAATGTATGACTGCCGCAGCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGTTTAAAAGTCTTGGCAGAAATGTATGACTGCCGCAGCTATG  650

seq1  GATTCTTTCGTCCCCTTATATCCTCTGGGAAAAGGGCCTACTTTCCAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTCGTCCCCTTATATCCTCTGGGAAAAGGGCCTACTTTCCAGGG  700

seq1  GCAATCATAGTAGATCTTCCAGAAGCCATAAAACTAATAAGGCAATAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATAGTAGATCTTCCAGAAGCCATAAAACTAATAAGGCAATAAGG  750

seq1  ACATCTAAACTCCAGCAGTTTTGAAGAAAATGACTTCTTAAAACTCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAAACTCCAGCAGTTTTGAAGAAAATGACTTCTTAAAACTCTGTT  800

seq1  TCTTTTAGAGTTGCATGAGATCAGCATGGTAGG-AAGGTTGACAAAGTAG  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTTTTAGAGTTGCATGAGATCAGCATGGTAGGAAAGGTTGACAAAGTAG  850

seq1  ACAGGGTCAGAGGTATATGCATTTCTGTGAAGAAGGGACTTAATTCACAA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGGGTCAGAGGTATATGCATTTCTGTGAAGAA-GGACTTAATTCACAA  899

seq1  GGAATTTTACTAAAATCAATGCAGATCCACCAACTGTATGACTGCAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTACTAAAATCAATGCAGATCCACCAACTGTATGACTGCAAATT  949

seq1  TGCTTAAGAATTTAATCATTTGTTGAAATTTAGTATTTCTGACTTCCTGA  999
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCTT-AGAATTTAATCA-TTGTTGAAATTTAGTATTTCTGACTTCCTGA  997

seq1  GAATAGTATTTCCAAGAAGACCCAAGATTATTCCAAAATCTGGATAATTT  1049
      ||||||||||||||   |||||| ||||||||||  ||||||||| ||||
seq2  GAATAGTATTTCCA--GAGACCC-AGATTATTCC--AATCTGGAT-ATTT  1041

seq1  TAGATTTGTCAACCTCTTGTAAGTGGAAAAAAAATCAGATGACAAAAAAA  1099
      |||||||||| ||||| ||| ||||  ||||||||| ||||||       
seq2  TAGATTTGTC-ACCTC-TGT-AGTG--AAAAAAATC-GATGAC-------  1078

seq1  ATAAAAAACAATGAAAACATTTTAATTTTATGGTTTTTACACAG-ACTGA  1148
      |||| |||| ||| ||||||||    ||||||    |||||||| |||||
seq2  ATAATAAAC-ATG-AAACATTT---ATTTATG----TTACACAGAACTGA  1119

seq1  TTAGTT  1154
       |||||
seq2  -TAGTT  1124

seq1: chr10_17366001_17367135
seq2: B6Ng01-317C03.g_65_1190 (reverse)

seq1  GCTGCCACATGTTCAGGTGACATGCAAGCACGTATGTGCACAGTACATAT  50
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTG-CACATGTTCA-GTGACATGCAAGCACGTATGTGCACAGTACATAT  48

seq1  GTGCAAGTAAAAAGAAGGGGTGCCCTTAACTGAGCCACCTGATAGTTTAT  100
      |||||||| |||||||||||||||  |||||||| |||   |||||||||
seq2  GTGCAAGT-AAAAGAAGGGGTGCC--TAACTGAG-CACTGAATAGTTTAT  94

seq1  AACAGAGTTAAAATTTCAGTTAAGGAGACTT-CCCAAC-ATCTATAAAAC  148
       |||||| | ||||||||||  | ||||||| |||||| |||||||||||
seq2  TACAGAGGT-AAATTTCAGT--AAGAGACTTCCCCAACAATCTATAAAAC  141

seq1  AAGCTGGCCTTCTTTGCTGGCCCGGCGAGGGAGGTTAGTTATCCATCCAT  198
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGG-CGTCTTTGCTGGCCCGGCGAGGGAGGTTAGTTATCCATCCAT  190

seq1  AGCATATTCTGCAAGCCTAGCAGATGCTCCTAAGTCTAAAAACTATAAAT  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCATATTCTGCAAG-CTAGCAGATGCTCCTAAGTCTAAAAACTATAAAT  239

seq1  TGTATGGAACATTAAAACTCTGGGAAAGGAAAATAAATACATGCTTATGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGAACATTAAAACTCTGGGAAAGGAAAATAAATACATGCTTATGC  289

seq1  TTGGGATACAACTTTATAGGAGTTTACAAGGAAGAATTTCATCATTACCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATACAACTTTATAGGAGTTTACAAGGAAGAATTTCATCATTACCC  339

seq1  TACACTGTGGACTCTGGACCTACAGGGTGAGGTTCTGCTCCCAACGCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTGGACTCTGGACCTACAGGGTGAGGTTCTGCTCCCAACGCTCC  389

seq1  AGCTTCAAAGCTGTGCAACCCCGGCTGGAACCCTTCCGTCCTCAGTTGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAAAGCTGTGCAACCCCGGCTGGAACCCTTCCGTCCTCAGTTGTA  439

seq1  TGATGATTAACTGAGTTAATGAGGGTAAATGCTTGTGGTCTCACTAATAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATTAACTGAGTTAATGAGGGTAAATGCTTGTGGTCTCACTAATAC  489

seq1  TCATGGCTTGTCATAAAGGAAGGGATGGACTTTACTATAGGCACAAGAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTTGTCATAAAGGAAGGGATGGACTTTACTATAGGCACAAGAGC  539

seq1  TGAGGGCCGTGAGAAAACAACAATTTCAATTATGTGTTTACACCTTCACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCGTGAGAAAACAACAATTTCAATTATGTGTTTACACCTTCACT  589

seq1  TTCACTAGTCTTACTGCATGAAGGCTCCCCAACAAGACTGGAAAGCTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAGTCTTACTGCATGAAGGCTCCCCAACAAGACTGGAAAGCTCTG  639

seq1  GCAAGTTGGGGAACACCTCTTATTTTTCCTTTCTTAATCTCTCTTAAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGGGGAACACCTCTTATTTTTCCTTTCTTAATCTCTCTTAAAAT  689

seq1  GTCACAGCTTCAATCAGACACCCAATCATCATTAAATTCTTAAGAGAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCTTCAATCAGACACCCAATCATCATTAAATTCTTAAGAGAGGA  739

seq1  ATGGAAGTCCACACATATACTCTACCATAAACATTCCCTTTACTGCAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTCCACACATATACTCTACCATAAACATTCCCTTTACTGCAAAT  789

seq1  ACATTCAACTCATTCCGTGGAACTATTTTTACTTCAACTTTCCCCACACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAACTCATTCCGTGGAACTATTTTTACTTCAACTTTCCCCACACA  839

seq1  GACTCAGTTTGCCCTGCTGCTTCCTCTATCTCTTCACGGCTTTATTCAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTTTGCCCTGCTGCTTCCTCTATCTCTTCACGGCTTTATTCAGA  889

seq1  AATATGCAAGAGGATTCAAACTTTCTGTGACCATATCCCTGCTTGATAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAAGAGGATTCAAACTTTCTGTGACCATATCCCTGCTTGATAAA  939

seq1  CATTTCTCTCTCTTAGAAGCCTATTCTTTAAATGCATACAATTTTCCATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCTCTCTTAGAAGCCTATTCTTTAAATGCATACAATTTTCCATA  989

seq1  TCTGCTCCCTGTTCAAAAATCTTGCAGAAACAATTGAGGATCACTCTGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCCTGTTCAAAAATCTTGCAGAAACAATTGAGGATCACTCTGAC  1039

seq1  TCATTCCTAGTCTCTTCTTGACTCCACTGATGGGCTCTGAATCTGTCATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTAGTCTCTTCTTGACTCCACTGATGGGCTCTGAATCTGTCATA  1089

seq1  GTTGACTGATCGCGACCTCTGTGCACACATGGAATTC  1135
      |||||||||||||||||||||||||||||||||||||
seq2  GTTGACTGATCGCGACCTCTGTGCACACATGGAATTC  1126