BAC Information

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BAC

Clone NameB6Ng01-317F16
Chromosome10 (Build37)
Map Location 98,964,345 - 99,085,586
singlet/doubletdoublet
Overlap geneLOC667502
Upstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232
Downstream geneCsl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317F16.bB6Ng01-317F16.g
ACCGA107521GA107522
length1,1031,045
definitionB6Ng01-317F16.b B6Ng01-317F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,084,491 - 99,085,586)(98,964,345 - 98,965,399)
sequence
gaattcttttgcaatgttaaaaaaaaactgtgcttgctgtttccttagaa
taaaaagaactggggtctaggatgctgatgcataggaaatcaaaaggaaa
cctggagtaaatgactggattgatatgtaaaataaaagactggacctgtg
ttctgcaggagttgagctatccagagaactttttaggataaaaagagaga
acttcttggagaactgagacagacagacagacagacagacacacacacac
acacacacacacacacacacacacacactcacactcacacacacaaggaa
gcagggcatggacaaagagatctcttagaatagcaagcaagcagaatata
gacagagaaatcttcagagagagagagcagaacacagagagactcagact
ggaaaagctgtgtcaagcagatcacacaggtcgtcagcttagatccacaa
tttgtcttcgagtcgttctttccacctctcccagacaccccttctctcag
aacccctctccatctagttgaatgtcttctaagggagaaagctgaatcca
gtacacatcaatgcagagcgctcagcaaaacatcgctgttacgagcatga
agcagcaggggtgagcatgcacaaagctctttcggaattcctgataacag
gaatgaaggaggctgacggctactgagctcatgacgtttgctgttactgt
gcaatgcactgttttctaacttaatcgtatgacacatctgaacgcagtca
gattccccacagcccgggggaatgagtcccactgaggtagtgtgacctgc
tgaagtgatgcatacttcacatcctttaacctctgtgtgatactaatctc
cgctgcaaggatttgttgttcgaggaagaatgaaacgccagactcagtat
gtaaaatcaaggagtgttgtattctacagaagaccagcatgtggggggtc
cctcatcccaacatggagagacctctaagtgagctcacaggcccattaag
aattcagggtagaaacttgtgttgagtatgcacagactgcacgtgctttg
tgattctatttatataaatatctagatagaatgaaggaccatgatagaag
tat
gaattcacttccccggataagtcaatgaaagccaataaaagggaagacta
ttagcactccacaaaaaggatgacctttgggtatctgtgcaatttccagt
cacagctgatgctttgatcccatccttgatttggagcaagtagaaagtat
ggactcttattttaaaatatgaatggtggaagaggtttcactgactaacg
catgttatcttgccagccttgtgctaaatggaatctacaggtgactcact
tttttccccctgcctctgcattcagtagtgcatattggctgagagttgag
tccctccttttgtcttaggttagcaagtgtgttgatggggggacaagtaa
gaaccatttgaagatgtatatgataattagctgagcagggtacctgacat
ctgtaatcccagcacagttgtgagaccaaggcaagaggatcatcatgagt
tacagtccaacatgggctacacagtgagttccagtgtaacctggactaca
gaacaagagcctgtctggaacaagtccacaacaaaacccaaaccatggat
ccagaaaccttttcatttttcatacacccttactttgatctgaggagaac
attttcactggcagagagctctctgtgccctttcttattgttctcatttc
tttcctgttccatcttgatatttttgtttttcactcaagatgccaaatat
tgcaaagtacatttagcctaatatctggagtcattgctgctcatctggtt
actatagattaatcaaagtgtgcgttcattttctttgcaggccatttcca
atcacacagcttattgcaccatatgttctgactgagccactgcagtagga
ggaacatgggactccctcttcatttgcattggcctcagaaaaagagcttg
cgtttcatgggtttggtttgctttcgagtcattcatgagcctgtgctcat
ttctgtcctggaaactagttactttacagacacaacttgtggggagtgag
tggaactgtgtagtgactgtgaggagcatttggaagggttagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99084491_99085586
seq2: B6Ng01-317F16.b_64_1152 (reverse)

seq1  ATATTTCTATCATGTGTC--TCTATCTATTCTAGATATTTTATATAAATA  48
      ||| |||||||||| |||  ||  |||| |||||||| ||||||||||||
seq2  ATACTTCTATCATG-GTCCTTCATTCTA-TCTAGATA-TTTATATAAATA  47

seq1  GAATCACAAAGCACGTGCAGTCTTGTGCATACTTCACAACAGGTTTCTTA  98
      |||||||||||||||||||||| ||||||||| |||  ||| ||||||  
seq2  GAATCACAAAGCACGTGCAGTC-TGTGCATAC-TCAACACAAGTTTCT--  93

seq1  CCCCTGAATTCCCCTAATTGGGCCTGTGAGCTCACTTAGGGGTCTCTCCA  148
       |||||||||   || | ||||||||||||||||||||| ||||||||||
seq2  ACCCTGAATT---CTTAATGGGCCTGTGAGCTCACTTAGAGGTCTCTCCA  140

seq1  TGTTGGGATGAGGGA-CCCCCACATGCTGGTCTTCTGTAGAATACAACAC  197
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTTGGGATGAGGGACCCCCCACATGCTGGTCTTCTGTAGAATACAACAC  190

seq1  TCCTTGATTTTACATACTGAGTCTGGCGTTTCATTCTTCCTCGAACAACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATTTTACATACTGAGTCTGGCGTTTCATTCTTCCTCGAACAACA  240

seq1  AATCCTTGCAGCGGAGATTAGTATCACACAGAGGTTAAAGGATGTGAAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTGCAGCGGAGATTAGTATCACACAGAGGTTAAAGGATGTGAAGT  290

seq1  ATGCATCACTTCAGCAGGTCACACTACCTCAGTGGGACTCATTCCCCCGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCACTTCAGCAGGTCACACTACCTCAGTGGGACTCATTCCCCCGG  340

seq1  GCTGTGGGGAATCTGACTGCGTTCAGATGTGTCATACGATTAAGTTAGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGGAATCTGACTGCGTTCAGATGTGTCATACGATTAAGTTAGAA  390

seq1  AACAGTGCATTGCACAGTAACAGCAAACGTCATGAGCTCAGTAGCCGTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGCATTGCACAGTAACAGCAAACGTCATGAGCTCAGTAGCCGTCA  440

seq1  GCCTCCTTCATTCCTGTTATCAGGAATTCCGAAAGAGCTTTGTGCATGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTCATTCCTGTTATCAGGAATTCCGAAAGAGCTTTGTGCATGCT  490

seq1  CACCCCTGCTGCTTCATGCTCGTAACAGCGATGTTTTGCTGAGCGCTCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTGCTGCTTCATGCTCGTAACAGCGATGTTTTGCTGAGCGCTCTG  540

seq1  CATTGATGTGTACTGGATTCAGCTTTCTCCCTTAGAAGACATTCAACTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGTGTACTGGATTCAGCTTTCTCCCTTAGAAGACATTCAACTAG  590

seq1  ATGGAGAGGGGTTCTGAGAGAAGGGGTGTCTGGGAGAGGTGGAAAGAACG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGGGGTTCTGAGAGAAGGGGTGTCTGGGAGAGGTGGAAAGAACG  640

seq1  ACTCGAAGACAAATTGTGGATCTAAGCTGACGACCTGTGTGATCTGCTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAAGACAAATTGTGGATCTAAGCTGACGACCTGTGTGATCTGCTTG  690

seq1  ACACAGCTTTTCCAGTCTGAGTCTCTCTGTGTTCTGCTCTCTCTCTCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTTTTCCAGTCTGAGTCTCTCTGTGTTCTGCTCTCTCTCTCTGA  740

seq1  AGATTTCTCTGTCTATATTCTGCTTGCTTGCTATTCTAAGAGATCTCTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTCTGTCTATATTCTGCTTGCTTGCTATTCTAAGAGATCTCTTT  790

seq1  GTCCATGCCCTGCTTCCTTGTGTGTGTGAGTGTGAGTGTGTGTGTGTGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGCCCTGCTTCCTTGTGTGTGTGAGTGTGAGTGTGTGTGTGTGTG  840

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTCAG  890

seq1  TTCTCCAAGAAGTTCTCTCTTTTTATCCTAAAAAGTTCTCTGGATAGCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAGAAGTTCTCTCTTTTTATCCTAAAAAGTTCTCTGGATAGCTC  940

seq1  AACTCCTGCAGAACACAGGTCCAGTCTTTTATTTTACATATCAATCCAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGCAGAACACAGGTCCAGTCTTTTATTTTACATATCAATCCAGT  990

seq1  CATTTACTCCAGGTTTCCTTTTGATTTCCTATGCATCAGCATCCTAGACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTCCAGGTTTCCTTTTGATTTCCTATGCATCAGCATCCTAGACC  1040

seq1  CCAGTTCTTTTTATTCTAAGGAAACAGCAAGCACAGTTTTTTTTTAACA  1096
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTTTTTATTCTAAGGAAACAGCAAGCACAGTTTTTTTTTAACA  1089

seq1: chr10_98964345_98965399
seq2: B6Ng01-317F16.g_65_1109

seq1  GAATTCACTTCCCCGGATAAGTCAATGAAAGCCAATAAAAGGGAAGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCCCCGGATAAGTCAATGAAAGCCAATAAAAGGGAAGACTA  50

seq1  TTAGCACTCCACAAAAAGGATGACCTTTGGGTATCTGTGCAATTTCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTCCACAAAAAGGATGACCTTTGGGTATCTGTGCAATTTCCAGT  100

seq1  CACAGCTGATGCTTTGATCCCATCCTTGATTTGGAGCAAGTAGAAAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGATGCTTTGATCCCATCCTTGATTTGGAGCAAGTAGAAAGTAT  150

seq1  GGACTCTTATTTTAAAATATGAATGGTGGAAGAGGTTTCACTGACTAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTATTTTAAAATATGAATGGTGGAAGAGGTTTCACTGACTAACG  200

seq1  CATGTTATCTTGCCAGCCTTGTGCTAAATGGAATCTACAGGTGACTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATCTTGCCAGCCTTGTGCTAAATGGAATCTACAGGTGACTCACT  250

seq1  TTTTTCCCCCTGCCTCTGCATTCAGTAGTGCATATTGGCTGAGAGTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCCTGCCTCTGCATTCAGTAGTGCATATTGGCTGAGAGTTGAG  300

seq1  TCCCTCCTTTTGTCTTAGGTTAGCAAGTGTGTTGATGGGGGGACAAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTTTTGTCTTAGGTTAGCAAGTGTGTTGATGGGGGGACAAGTAA  350

seq1  GAACCATTTGAAGATGTATATGATAATTAGCTGAGCAGGGTACCTGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATTTGAAGATGTATATGATAATTAGCTGAGCAGGGTACCTGACAT  400

seq1  CTGTAATCCCAGCACAGTTGTGAGACCAAGGCAAGAGGATCATCATGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCCCAGCACAGTTGTGAGACCAAGGCAAGAGGATCATCATGAGT  450

seq1  TACAGTCCAACATGGGCTACACAGTGAGTTCCAGTGTAACCTGGACTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCCAACATGGGCTACACAGTGAGTTCCAGTGTAACCTGGACTACA  500

seq1  GAACAAGAGCCTGTCTGGAACAAGTCCACAACAAAACCCAAACCATGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAGCCTGTCTGGAACAAGTCCACAACAAAACCCAAACCATGGAT  550

seq1  CCAGAAACCTTTTCATTTTTCATACACCCTTACTTTGATCTGAGGAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACCTTTTCATTTTTCATACACCCTTACTTTGATCTGAGGAGAAC  600

seq1  ATTTTCACTGGCAGAGAGCTCTCTGTGCCCTTTCTTATTGTTCTCATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTGGCAGAGAGCTCTCTGTGCCCTTTCTTATTGTTCTCATTTC  650

seq1  TTTCCTGTTCCATCTTGATATTTTTGTTTTTCACTCAAGATGCCAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTCCATCTTGATATTTTTGTTTTTCACTCAAGATGCCAAATAT  700

seq1  TGCAAAGTACATTTAGCCTAATATCTGGAGTCATTGCTGCTCATCTGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTACATTTAGCCTAATATCTGGAGTCATTGCTGCTCATCTGGTT  750

seq1  ACTATAGATTAATCAAAGTGTGCGTTCATTTTCTTTGCAGGCCATTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGATTAATCAAAGTGTGCGTTCATTTTCTTTGCAGGCCATTTCCA  800

seq1  ATCACACAGCTTATTGCACCATATGTTCTGACTGAGCCACTGCAGTAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACAGCTTATTGCACCATATGTTCTGACTGAGCCACTGCAGTAGGA  850

seq1  GGAACATGGGACTCCCTCTTCATTTGCATTGGCCTCAGAAAAAGAGCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGGGACTCCCTCTTCATTTGCATTGGCCTCAGAAAAAGAGCTTG  900

seq1  CGTTTCATGGGTTTGGTTTGCTTTCGAGTCATTCATGAGGCCTGTGCTCA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CGTTTCATGGGTTTGGTTTGCTTTCGAGTCATTCATGA-GCCTGTGCTCA  949

seq1  TTTCTGTCCTGGAAACTAGTTACTTTACAAGAACAACAAACTTGT-GGGA  999
      |||||||||||||||||||||||||||||   ||    ||||||| ||||
seq2  TTTCTGTCCTGGAAACTAGTTACTTTACAGACAC----AACTTGTGGGGA  995

seq1  GTGAGTGGAACTGTTGGTAAGTGACTGTGAGGGAGCATTTTGGAAAGGGT  1049
      ||||||||||||||  || ||||||||||| |||||||||  | ||||||
seq2  GTGAGTGGAACTGT--GT-AGTGACTGTGA-GGAGCATTT--GGAAGGGT  1039

seq1  TAGTAA  1055
      ||||||
seq2  TAGTAA  1045