BAC Information

Click to search

BAC

Clone NameB6Ng01-317O14
Chromosome10 (Build37)
Map Location 12,449,944 - 12,547,885
singlet/doubletdoublet
Overlap geneUtrn
Upstream genenone
Downstream geneLOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317O14.bB6Ng01-317O14.g
ACCGA107935GA107936
length1,035852
definitionB6Ng01-317O14.b B6Ng01-317O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,449,944 - 12,450,951)(12,547,034 - 12,547,885)
sequence
gaattctttctcagttgtctcattaatcaacgtattttcaagctactcct
tacctctatagtctaccaccaccaccaccaccccaaaaaaagtgaaaatt
agaaaaataaaagacaaatgcagatcctatctcctcgcctagtaaagtta
agatatgcgtataaatgaccagggagcaaaacagaaggtgcagacatacc
cttctctctcaagagagagagagagagagagagagagggagagagagaga
gagagagtgggagagagataaaatgtcctagcaatagacaataatgaata
gacggcctatttaaaactacaagtgacaggctagagagatggctcagtgg
ttaagagcactgactgctcttctagaggtcctgagttcaattcccatcaa
ccacatggtggctcacaaccatctgtaatgggatccgatgcactcttctt
gtgtgtctgacgacagcaacagtaaagtcacatacatgaaataaataaaa
cttcaagtgatacagttggtcaaaaatcccttgttttctaaacatttttt
taatcctaaagttatttccaaactttaatagagttttctattgctgtgat
aaaacaccatggccaaaaggagcttaggaggaaaaggctccgtctctaag
ggacacagggcaggaattacagcagagaggaaggaatgccgtcagctgcc
tcagtcatccaggctcatgctgcctgcttcctgctacaacgcatgaccac
ctgcccccatggggcagcacccccaaagtggggggaggcccttcccacat
caatccattaaagaaaaatgccccgcacagacttgcctaacaggctaacc
tgatgaagacttgtctcaattgtggttcctcttctctaataacacactac
agtgtgtcaagctgacaagtaaccaatgaagcaattaagcaactggtaag
ggtgaaagagccaaccaattctgttctgatatgacgtgatggtcccgcat
tattactttagaaaaataaccaccggatggggatg
gaattcatgggcttcctgccaggtcataacccaggataaagatgataata
tcaagtgcatgctggtttgctcagagcctggcaatagcggccgagtgttt
cagaaaacctttatagcagaggtgactgtttgacatggagttgactgttc
tgtgactgtcccctactgcacaatctgtagcaggcagagcaacagacttc
caccaccatggtgtctggactcttgaatgtgcccagtagtcggaaaaaaa
aaacaaacaaaaaaaaaaacaaaaaaaaaaacccctaatatcataatata
cagatagttgcttagctgcccagttgatacatattctgcagtgttctgag
gggaatcacgaggcggctgagataggctgtggaagttaaggaagagctcc
ttaaaagaatcatcagctccaggacttcatgcttgccaggtttgtgcaga
gccaggacaaagccagcaattgtgggcaaagtgtgctcaaggctgtgtgc
tgaggttggccaggctgcacttggcattttattcaagaatatttgtcatc
ctgatgggacaggagtcctttacctttcagtcagagagcaggtattattt
agtactttcgcggatagatccctaaaagctttagggattcatatggatta
ccaggggctaaacatttaattgcaaaaccgagagagaccagattgcaaaa
tttgtaagaaactctcttgcaagagttagaaactgggagaaaagtatttg
ctggtctgaagttccttaatgtctttgctcagtcagttttgtctttggct
tgaatgaacagggaagcctaaggtggcaggagaggcgaggtacgggtgtg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12449944_12450951
seq2: B6Ng01-317O14.b_49_1067

seq1  GAATTCTTTCTCAGTTGTCTCATTAATCAACGTATTTTCAAGCTACTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCAGTTGTCTCATTAATCAACGTATTTTCAAGCTACTCCT  50

seq1  TACCTCTATAGTCTACCACCACCACCACCACCCCAAAAAAAGTGAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTATAGTCTACCACCACCACCACCACCCCAAAAAAAGTGAAAATT  100

seq1  AGAAAAATAAAAGACAAATGCAGATCCTATCTCCTCGCCTAGTAAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAAAAGACAAATGCAGATCCTATCTCCTCGCCTAGTAAAGTTA  150

seq1  AGATATGCGTATAAATGACCAGGGAGCAAAACAGAAGGTGCAGACATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCGTATAAATGACCAGGGAGCAAAACAGAAGGTGCAGACATACC  200

seq1  CTTCTCTCTCAAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTCAAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGA  250

seq1  GAGAGAGTGGGAGAGAGATAAAATGTCCTAGCAATAGACAATAATGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGTGGGAGAGAGATAAAATGTCCTAGCAATAGACAATAATGAATA  300

seq1  GACGGCCTATTTAAAACTACAAGTGACAGGCTAGAGAGATGGCTCAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCCTATTTAAAACTACAAGTGACAGGCTAGAGAGATGGCTCAGTGG  350

seq1  TTAAGAGCACTGACTGCTCTTCTAGAGGTCCTGAGTTCAATTCCCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCACTGACTGCTCTTCTAGAGGTCCTGAGTTCAATTCCCATCAA  400

seq1  CCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCACTCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCACTCTTCTT  450

seq1  GTGTGTCTGACGACAGCAACAGTAAAGTCACATACATGAAATAAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGACGACAGCAACAGTAAAGTCACATACATGAAATAAATAAAA  500

seq1  CTTCAAGTGATACAGTTGGTCAAAAATCCCTTGTTTTCTAAACATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTGATACAGTTGGTCAAAAATCCCTTGTTTTCTAAACATTTTTT  550

seq1  TAATCCTAAAGTTATTTCCAAACTTTAATAGAG-TTTCTATTGCTGTGAT  599
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAATCCTAAAGTTATTTCCAAACTTTAATAGAGTTTTCTATTGCTGTGAT  600

seq1  AAAACACCATGGCCAAAAGGAGCTTAGGAGG-AAAGGCTCCGTCTCTAAG  648
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAACACCATGGCCAAAAGGAGCTTAGGAGGAAAAGGCTCCGTCTCTAAG  650

seq1  GGACACAGGGCAGGAATTACAGCAGAGAGGAAGGAATGCCGCCAGCTGCC  698
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGACACAGGGCAGGAATTACAGCAGAGAGGAAGGAATGCCGTCAGCTGCC  700

seq1  TCAGTCATCCAGGCTCATGCTGCCTGCTTCCTGCTACAACGCAGGACCAC  748
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAGTCATCCAGGCTCATGCTGCCTGCTTCCTGCTACAACGCATGACCAC  750

seq1  CTGCCCC--AGGGGCAGCAACCCCAAAGT-GGGGGAGGCCC-TCCCACAT  794
      |||||||   ||||||||| ||||||||| ||||||||||| ||||||||
seq2  CTGCCCCCATGGGGCAGCACCCCCAAAGTGGGGGGAGGCCCTTCCCACAT  800

seq1  CAAT-CATTAAAG-AAAATG-CCCGCACAGACTTGCCT-ACAGGCTAACC  840
      |||| |||||||| |||||| ||||||||||||||||| |||||||||||
seq2  CAATCCATTAAAGAAAAATGCCCCGCACAGACTTGCCTAACAGGCTAACC  850

seq1  TGATGAAGACATTGTCTCAATTGTGGTTCCTCTTCTCTAATAACACACTA  890
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGAC-TTGTCTCAATTGTGGTTCCTCTTCTCTAATAACACACTA  899

seq1  CAGTGTGTCAAGCTGACAAG-AAACAAAGAAGCAA-TAAGCAAACTGGAA  938
      |||||||||||||||||||| || ||| ||||||| ||||| |||||| |
seq2  CAGTGTGTCAAGCTGACAAGTAACCAATGAAGCAATTAAGC-AACTGGTA  948

seq1  AGGCAGAAAAGGCAAACCAATCTTGTTCTGATAATGAC-TGAT-GTCCGT  986
      |||  ||||  || |||||||  ||||||||| ||||| |||| ||||  
seq2  AGGGTGAAAGAGCCAACCAATTCTGTTCTGAT-ATGACGTGATGGTCCCG  997

seq1  CATTATTACTTTAGAAAAATAA  1008
      ||||||||||||||||||||||
seq2  CATTATTACTTTAGAAAAATAA  1019

seq1: chr10_12547034_12547885
seq2: B6Ng01-317O14.g_68_919 (reverse)

seq1  CACACACCCGTACCTCGCCTCTCCTGCCACCTTAGGCTTCCCTGTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCCGTACCTCGCCTCTCCTGCCACCTTAGGCTTCCCTGTTCATT  50

seq1  CAAGCCAAAGACAAAACTGACTGAGCAAAGACATTAAGGAACTTCAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAAGACAAAACTGACTGAGCAAAGACATTAAGGAACTTCAGACC  100

seq1  AGCAAATACTTTTCTCCCAGTTTCTAACTCTTGCAAGAGAGTTTCTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATACTTTTCTCCCAGTTTCTAACTCTTGCAAGAGAGTTTCTTACA  150

seq1  AATTTTGCAATCTGGTCTCTCTCGGTTTTGCAATTAAATGTTTAGCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCAATCTGGTCTCTCTCGGTTTTGCAATTAAATGTTTAGCCCCT  200

seq1  GGTAATCCATATGAATCCCTAAAGCTTTTAGGGATCTATCCGCGAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCCATATGAATCCCTAAAGCTTTTAGGGATCTATCCGCGAAAGTA  250

seq1  CTAAATAATACCTGCTCTCTGACTGAAAGGTAAAGGACTCCTGTCCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAATACCTGCTCTCTGACTGAAAGGTAAAGGACTCCTGTCCCATC  300

seq1  AGGATGACAAATATTCTTGAATAAAATGCCAAGTGCAGCCTGGCCAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACAAATATTCTTGAATAAAATGCCAAGTGCAGCCTGGCCAACCT  350

seq1  CAGCACACAGCCTTGAGCACACTTTGCCCACAATTGCTGGCTTTGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACAGCCTTGAGCACACTTTGCCCACAATTGCTGGCTTTGTCCTG  400

seq1  GCTCTGCACAAACCTGGCAAGCATGAAGTCCTGGAGCTGATGATTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCACAAACCTGGCAAGCATGAAGTCCTGGAGCTGATGATTCTTTT  450

seq1  AAGGAGCTCTTCCTTAACTTCCACAGCCTATCTCAGCCGCCTCGTGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTCTTCCTTAACTTCCACAGCCTATCTCAGCCGCCTCGTGATTC  500

seq1  CCCTCAGAACACTGCAGAATATGTATCAACTGGGCAGCTAAGCAACTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGAACACTGCAGAATATGTATCAACTGGGCAGCTAAGCAACTATC  550

seq1  TGTATATTATGATATTAGGGGTTTTTTTTTTTGTTTTTTTTTTTGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTATGATATTAGGGGTTTTTTTTTTTGTTTTTTTTTTTGTTTGT  600

seq1  TTTTTTTTTCCGACTACTGGGCACATTCAAGAGTCCAGACACCATGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCGACTACTGGGCACATTCAAGAGTCCAGACACCATGGTGG  650

seq1  TGGAAGTCTGTTGCTCTGCCTGCTACAGATTGTGCAGTAGGGGACAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCTGTTGCTCTGCCTGCTACAGATTGTGCAGTAGGGGACAGTCA  700

seq1  CAGAACAGTCAACTCCATGTCAAACAGTCACCTCTGCTATAAAGGTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGTCAACTCCATGTCAAACAGTCACCTCTGCTATAAAGGTTTTC  750

seq1  TGAAACACTCGGCCGCTATTGCCAGGCTCTGAGCAAACCAGCATGCACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACACTCGGCCGCTATTGCCAGGCTCTGAGCAAACCAGCATGCACTT  800

seq1  GATATTATCATCTTTATCCTGGGTTATGACCTGGCAGGAAGCCCATGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTATCATCTTTATCCTGGGTTATGACCTGGCAGGAAGCCCATGAAT  850

seq1  TC  852
      ||
seq2  TC  852