BAC Information

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BAC

Clone NameB6Ng01-319B09
Chromosome10 (Build37)
Map Location 65,115,840 - 65,282,784
singlet/doubletdoublet
Overlap genenone
Upstream geneCtnna3, LOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319B09.bB6Ng01-319B09.g
ACCGA108809GA108810
length1,1581,206
definitionB6Ng01-319B09.b B6Ng01-319B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,115,840 - 65,116,990)(65,281,597 - 65,282,784)
sequence
gaattcaattcaggttatcaggctttttacaacaaccctacttcttgtaa
ctgagctgtctgcttggcccatatggatagatcttaaacatacattgcta
aattaaagaatttttccaaagagtactgactgcttgattccaatcatata
gctttctgagaaagccacagaggcttaggagtcgaagttaataaaacagc
ttgtgggatgtttattttaggaagattaaactcctcctaaggtcttgcaa
tggtagaacaaaatactgagcatttgtcaaaacccatggaacttaacacc
ccagtaggccttacggaagcaaataaaacctcttgtaggggatgggtaaa
aaaaatctcaaattcagcattgttcctttttagagacatcaacgtgaggc
tggagaaattgctcagttgttaagagcacctttttaataatgagaatcaa
agatggacacccatcatcaggatggcaatcagctcaaacaacctataact
tttagttctaaggaatccgatacacttttcaggcctacacacacacacac
acacacacacacacacacacacacacacacacacacacacacacttttaa
gttatccacctgcaattacaaacatttgaggcaatctgatctgtgttcca
atagagtgatgtaacggtttcagaggttcctttgtgaggtgttagccacc
agttagtaggcctgttcatggagaagtgtcaagattatgaggattttaaa
atcatcagtaagactggcaagatggctctgttggtaagagcactgactgc
tcttctgaaagtcctgagttcaaatcccagcaacaacatggtggctcaca
accacccttaataagatctgatgccctcttctggtgcatctgaagacagt
tacagtgtactaaattcataataataagtaaatctttttttttaaaaatt
aaaatcatcagtggatttaatattaaatcatcatcagtgaacatataatt
gatggattgagttgggttttctggtggaacaccctgatcactgggagaat
atgcaactaatttcgtgtgcacctctggaagctccctctgaatgaatacg
gctatggaggtattatccaatgagaatatgtcgtcttccaagtactacag
tggtgaaa

gaattcccatttctgtggatatttgaaaagtatatctattacttctattt
tgataattttgtatcctatttcagttttacttaattgtgcctactcttct
gtgatttatatagatattcaataataaattcaattatatacatatatttg
aattaggatctttattgttttagaaccagttaaaacatttccctgcaact
cagaaacatgatttaaaaaaaaaatagcagtatatggtattttaaaaaca
atgatatatagacaaaagccttaaaaaagaaaatattttaaaaatgatga
aaagaaaaacatcaggtaagtgaataattgatttcatcttttatctttgg
cctataaaattattctttttgtgctatgaatatatttgaggtaatctgtg
attaactcactgaacttataggatcctcaaaatctggatttaaacttcaa
tttaaaagttgggagcctatgtgtactgatcattaccatcttctatattt
ctagatttttaatacattcaacttggtattttatttattagctgggattc
acaaatggtggccatttcatcccctagatcttctgaagattattaaaatt
tctatggtaccacagattggagtttgaggaatgaacattgagaccagaaa
ttgagaagatttttacaagtagtgtaagaaaaaaattgagaaaatggaaa
taaatgaagataattaaaatgaagaaaatcaatatccatactgttgtggt
ttgatattgattttgtgtcaaatttatataaatgttcacagttcaaataa
aatacttttcttttccctgtgtgcttatatctagaatacttatgatatag
aactcaaaatgtttgaggatatgaaagtacttaatttgatttaaacatta
taccaggaatgcatgttcatagacataaagttaactcatgattacctgta
atcttaaaaagttttatttcaattttggtctatggagtgttttcctgggg
gagactagaatagggcaccaggtcccataaaaatgaaggtacagatggct
ggtgcatcagtattgttagattctgggaactgatcatagggtataattag
gaaggagtcggtaaggcacctcctttaattactggccaccactttcacgc
ccccatgttaccataaaagtactctaatgttgttacaaccctaaataaat
tgaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_65115840_65116990
seq2: B6Ng01-319B09.b_50_1207

seq1  GAATTCAATTCAGGTTATCAGGCTTTTTACAACAACCCTACTTCTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCAGGTTATCAGGCTTTTTACAACAACCCTACTTCTTGTAA  50

seq1  CTGAGCTGTCTGCTTGGCCCATATGGATAGATCTTAAACATACATTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGTCTGCTTGGCCCATATGGATAGATCTTAAACATACATTGCTA  100

seq1  AATTAAAGAATTTTTCCAAAGAGTACTGACTGCTTGATTCCAATCATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGAATTTTTCCAAAGAGTACTGACTGCTTGATTCCAATCATATA  150

seq1  GCTTTCTGAGAAAGCCACAGAGGCTTAGGAGTCGAAGTTAATAAAACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGAGAAAGCCACAGAGGCTTAGGAGTCGAAGTTAATAAAACAGC  200

seq1  TTGTGGGATGTTTATTTTAGGAAGATTAAACTCCTCCTAAGGTCTTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGATGTTTATTTTAGGAAGATTAAACTCCTCCTAAGGTCTTGCAA  250

seq1  TGGTAGAACAAAATACTGAGCATTTGTCAAAACCCATGGAACTTAACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAACAAAATACTGAGCATTTGTCAAAACCCATGGAACTTAACACC  300

seq1  CCAGTAGGCCTTACGGAAGCAAATAAAACCTCTTGTAGGGGATGGGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGGCCTTACGGAAGCAAATAAAACCTCTTGTAGGGGATGGGTAAA  350

seq1  AAAAATCTCAAATTCAGCATTGTTCCTTTTTAGAGACATCAACGTGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTCAAATTCAGCATTGTTCCTTTTTAGAGACATCAACGTGAGGC  400

seq1  TGGAGAAATTGCTCAGTTGTTAAGAGCACCTTTTTAATAATGAGAATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAATTGCTCAGTTGTTAAGAGCACCTTTTTAATAATGAGAATCAA  450

seq1  AGATGGACACCCATCATCAGGATGGCAATCAGCTCAAACAACCTATAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACACCCATCATCAGGATGGCAATCAGCTCAAACAACCTATAACT  500

seq1  TTTAGTTCTAAGGAATCCGATACACTTTTCAGGCCTACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCTAAGGAATCCGATACACTTTTCAGGCCTACACACACACACAC  550

seq1  ACACACACACACACACACACACACACACACACACACACACACACTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACTTTTAA  600

seq1  GTTATCCACCTGCAATTACAAACATTTGAGGCAATCTGATCTGTGTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCACCTGCAATTACAAACATTTGAGGCAATCTGATCTGTGTTCCA  650

seq1  ATAGAGTGATGTAACGGTTTCAGAGGTTCCTTTGTGAGGTGTTAGCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTGATGTAACGGTTTCAGAGGTTCCTTTGTGAGGTGTTAGCCACC  700

seq1  AGTTAGTAGGCCTGTTCATGGAGAAGTGTCAAGATTATGAGGATTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTAGGCCTGTTCATGGAGAAGTGTCAAGATTATGAGGATTTTAAA  750

seq1  ATCATCAGTAAGACTGGCAAGATGGCTCTGTTGGTAAGAGCACTGACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGTAAGACTGGCAAGATGGCTCTGTTGGTAAGAGCACTGACTGC  800

seq1  TCTTCTGAAAGTCCTGAGTTCAAATCCCAGCAACAACATGGTGGCTCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAAAGTCCTGAGTTCAAATCCCAGCAACAACATGGTGGCTCACA  850

seq1  ACCACCCTTAATAAGATCTGATGCCCTCTTCTGGTGCATCTGAAGACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTTAATAAGATCTGATGCCCTCTTCTGGTGCATCTGAAGACAGT  900

seq1  TACAGTGTACT-AATTCATAATAATAAGTAAATCTTTTTTTTTAAAAATT  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTACTAAATTCATAATAATAAGTAAATCTTTTTTTTTAAAAATT  950

seq1  AAAATCATCAGTGGATTTAATATTAAAATCATCATCAGTGAACATATAAT  999
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  AAAATCATCAGTGGATTTAATATT-AAATCATCATCAGTGAACATATAA-  998

seq1  TTGATGGATTGAGTTGG--TTTCTGGTGG-ACAACCTGGTCACTGGGAG-  1045
      |||||||||||||||||  |||||||||| ||| |||| |||||||||| 
seq2  TTGATGGATTGAGTTGGGTTTTCTGGTGGAACACCCTGATCACTGGGAGA  1048

seq1  ATATGCAAACTAATTCCGTGTGCA-CTCTGG-AGCT-CCTCTG-ATGAAT  1091
      |||||| |||||||| |||||||| |||||| |||| |||||| ||||||
seq2  ATATGC-AACTAATTTCGTGTGCACCTCTGGAAGCTCCCTCTGAATGAAT  1097

seq1  AAGGGTATGGAGGTATTAT-CAATGAGAATAATGGCTGTATTCCAAGTAC  1140
      | || |||||||||||||| |||||||||| ||| | || ||||||||||
seq2  ACGGCTATGGAGGTATTATCCAATGAGAAT-ATGTC-GTCTTCCAAGTAC  1145

seq1  TACA--TGTGAAA  1151
      ||||   ||||||
seq2  TACAGTGGTGAAA  1158


seq1: chr10_65281597_65282784
seq2: B6Ng01-319B09.g_66_1271 (reverse)

seq1  AATTCAATTTATTTTTAGTTGATACAAACAATAGAGTACTTTTATG--TA  48
      ||||||||||||||   |||| ||  |||| |||||||||||||||   |
seq2  AATTCAATTTATTTAGGGTTG-TAACAACATTAGAGTACTTTTATGGTAA  49

seq1  CATGGGGCTG---AAGTGGTGGCCCAGTAATTAA--GA-GTG-CTTA-CG  90
      |||||||  |   ||||||||| |||||||||||  || ||| |||| ||
seq2  CATGGGGGCGTGAAAGTGGTGG-CCAGTAATTAAAGGAGGTGCCTTACCG  98

seq1  ACT-CTTC--TATTATA-CCTATGATCAGTTCCCAGAATCTA--CATACT  134
      ||| ||||   |||||| ||||||||||||||||||||||||   |||||
seq2  ACTCCTTCCTAATTATACCCTATGATCAGTTCCCAGAATCTAACAATACT  148

seq1  GATGCA-CAGCCATCTGTACCTTCATTTTTATGGGACCTGGTGCCCTATT  183
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACCAGCCATCTGTACCTTCATTTTTATGGGACCTGGTGCCCTATT  198

seq1  CTAGTCT-CCACAGGAAAACACT-CATAGA-CAAAATTGAAATAAAACTT  230
      ||||||| || |||||||||||| |||||| |||||||||||||||||||
seq2  CTAGTCTCCCCCAGGAAAACACTCCATAGACCAAAATTGAAATAAAACTT  248

seq1  TTTAAGATTACAGGTAATCATGAGTTAACTTTATGTCTATGAACATGCAT  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATTACAGGTAATCATGAGTTAACTTTATGTCTATGAACATGCAT  298

seq1  TCCTGGTATAATGTTTAAATCAAATTAAGTACTTTCATATCCTCAAACAT  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTATAATGTTTAAATCAAATTAAGTACTTTCATATCCTCAAACAT  348

seq1  TTTGAGTTCTATATCATAAGTATTCTAGATATAAGCACACAGGGAAAAGA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTCTATATCATAAGTATTCTAGATATAAGCACACAGGGAAAAGA  398

seq1  AAAGTATTTTATTTGAACTGTGAACATTTATATAAATTTGACACAAAATC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTTATTTGAACTGTGAACATTTATATAAATTTGACACAAAATC  448

seq1  AATATCAAACCACAACAGTATGGATATTGATTTTCTTCATTTTAATTATC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAAACCACAACAGTATGGATATTGATTTTCTTCATTTTAATTATC  498

seq1  TTCATTTATTTCCATTTTCTCAATTTTTTTCTTACACTACTTGTAAAAAT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTATTTCCATTTTCTCAATTTTTTTCTTACACTACTTGTAAAAAT  548

seq1  CTTCTCAATTTCTGGTCTCAATGTTCATTCCTCAAACTCCAATCTGTGGT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAATTTCTGGTCTCAATGTTCATTCCTCAAACTCCAATCTGTGGT  598

seq1  ACCATAGAAATTTTAATAATCTTCAGAAGATCTAGGGGATGAAATGGCCA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGAAATTTTAATAATCTTCAGAAGATCTAGGGGATGAAATGGCCA  648

seq1  CCATTTGTGAATCCCAGCTAATAAATAAAATACCAAGTTGAATGTATTAA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTGAATCCCAGCTAATAAATAAAATACCAAGTTGAATGTATTAA  698

seq1  AAATCTAGAAATATAGAAGATGGTAATGATCAGTACACATAGGCTCCCAA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGAAATATAGAAGATGGTAATGATCAGTACACATAGGCTCCCAA  748

seq1  CTTTTAAATTGAAGTTTAAATCCAGATTTTGAGGATCCTATAAGTTCAGT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATTGAAGTTTAAATCCAGATTTTGAGGATCCTATAAGTTCAGT  798

seq1  GAGTTAATCACAGATTACCTCAAATATATTCATAGCACAAAAAGAATAAT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATCACAGATTACCTCAAATATATTCATAGCACAAAAAGAATAAT  848

seq1  TTTATAGGCCAAAGATAAAAGATGAAATCAATTATTCACTTACCTGATGT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGGCCAAAGATAAAAGATGAAATCAATTATTCACTTACCTGATGT  898

seq1  TTTTCTTTTCATCATTTTTAAAATATTTTCTTTTTTAAGGCTTTTGTCTA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCATCATTTTTAAAATATTTTCTTTTTTAAGGCTTTTGTCTA  948

seq1  TATATCATTGTTTTTAAAATACCATATACTGCTATTTTTTTTTTAAATCA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATTGTTTTTAAAATACCATATACTGCTATTTTTTTTTTAAATCA  998

seq1  TGTTTCTGAGTTGCAGGGAAATGTTTTAACTGGTTCTAAAACAATAAAGA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGAGTTGCAGGGAAATGTTTTAACTGGTTCTAAAACAATAAAGA  1048

seq1  TCCTAATTCAAATATATGTATATAATTGAATTTATTATTGAATATCTATA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATTCAAATATATGTATATAATTGAATTTATTATTGAATATCTATA  1098

seq1  TAAATCACAGAAGAGTAGGCACAATTAAGTAAAACTGAAATAGGATACAA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCACAGAAGAGTAGGCACAATTAAGTAAAACTGAAATAGGATACAA  1148

seq1  AATTATCAAAATAGAAGTAATAGATATACTTTTCAAATATCCACAGAAAT  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCAAAATAGAAGTAATAGATATACTTTTCAAATATCCACAGAAAT  1198

seq1  GGGAATTC  1188
      ||||||||
seq2  GGGAATTC  1206


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