BAC Information

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BAC

Clone NameB6Ng01-319P01
Chromosome10 (Build37)
Map Location 115,487,166 - 115,679,739
singlet/doubletdoublet
Overlap genePtprr, 4933416C03Rik
Upstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8
Downstream genePtprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319P01.bB6Ng01-319P01.g
ACCGA109447GA109448
length1,1531,008
definitionB6Ng01-319P01.b B6Ng01-319P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,487,166 - 115,488,346)(115,678,740 - 115,679,739)
sequence
gaattctctccaacctgcagcaaaaataattaaaaaaaataaaattcacc
tagggttggagttggaggtaaaatgaaactcaattcctaagcagccttta
taatatttgcacctcagtgggtacttaactaattttgtaatgcatccatg
gttcatatattaacttttgtagttaatcacaactgtaattgccaaaactg
tttgtacaaaactacttacattatttattcaatggtaatttcctaggaaa
actggagagatggggttatttttcatataaaccgatgatgctcagactct
cctaaagcagagggtgacatgcacgtaaggatcagtaggcttgcgaggca
ctcttccctgaaaagcaatctaagaatagatcataggcagcacaaaaata
tacttgacaacagtttaatggtcttgatggagtaactggtgtattgtgca
tataagacttatatatgtgtttctatgctcaaaacacacctaaactgaca
caaatacactgtacacaaattctgatgtggcctttcttcccccttaggga
atatttcagtgatactgatgaattatcatttagtttaataaatataaaat
gagcagtattaataagtagctgtcactttaacagaataaatgcctgaaat
gctttttttttttttttttaatcataaggtcaaaagctatcctaaacctc
tgaaatgtgcacgtaacttctaagagttcccagtcagatggtaacaattc
ttattttgtcctccaatatttagcccatgctcctctttctgaggatattg
gcaatgaggtttagactgagaaatttaagaaggacgggcacctcctctcc
ttcctgatttctaattggtgcaacaacaacaaaaattcctgaagagattt
tcgtctataaacaaaatttatctattccctttttcttctgtagtgaggaa
aagctatagtttatttgttctatggaaagaacaacacaatgaatatgttt
atcccatggagtgatgatacattctagaatcgtgaagaaccctgttgctc
tgcaatacaacatagagaaagaggctcgagtcatcttgaaatggacaaga
aatgggcttagcaatggcattagaccttggtcgtcatgtctcagatgcct
gac
gaattctcttcatgtcgagattcattttttaaaaaaaaaaaaagaactca
aaattgcctgcagctaggtctctttcattataagaacttatttttcagtt
ctagattacttttatttttttgtatattcccacattgtaaaaaataaaag
attattgggattgctaaaaagaagatggtgatcatgcacgcctgtatttg
ttagaaagtaaacagttataaacatataaagcgtgggaacttctaaagat
acgtccgcctctgcattctctggaggaaatgaggtttttctattttaaac
aatgacactgaacacaattgagagctggccagtgttcagtaaccggcatc
ttcctggtggtgtggatttgcagcatattcctctagagcaggcttctcag
tgttattttgctctgtaaaacattagcgtttcctatatgatattacatgc
gtatccttgaggagcctaggcatgaggaattttattttaatttaacagtg
aagggatggttaaaaacatgtcatgcacttttggaattatgactgcctac
aggaaataaacaagtagcaggttacacagcaaatatataacacactcgat
tctcatgtccctgggagtgtatctcaaagattaaaaaaggataagagacc
aaacagtaaaaaaaacaacaacaacaacacccaataaagtacatctccat
gtgaattttgcagccaaagagaaaaacaaaatcttcaacaacaattcagt
gtgagaattatttttgaaaaggtatcctagctttaccccagatccacaca
gttctcctgtgggcacagtggaaatctgagaattggtaccaagaaattta
actttaaaaagatgtctctcttgcacctccaggggaggaaccctgtagca
cctttaacattaggaccctgggcatttctgggagaatggtcagctatggg
cgttgtggttattgaaaggcagcctttcctagggctttgacattgtccca
gtttgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_115487166_115488346
seq2: B6Ng01-319P01.b_49_1201

seq1  GAATTCTCTCCAACCTGCAGCAAAAATAATTAAAAAAAATAAAATTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCAACCTGCAGCAAAAATAATTAAAAAAAATAAAATTCACC  50

seq1  TAGGGTTGGAGTTGGAGGTAAAATGAAACTCAATTCCTAAGCAGCCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTGGAGTTGGAGGTAAAATGAAACTCAATTCCTAAGCAGCCTTTA  100

seq1  TAATATTTGCACCTCAGTGGGTACTTAACTAATTTTGTAATGCATCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTGCACCTCAGTGGGTACTTAACTAATTTTGTAATGCATCCATG  150

seq1  GTTCATATATTAACTTTTGTAGTTAATCACAACTGTAATTGCCAAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATATATTAACTTTTGTAGTTAATCACAACTGTAATTGCCAAAACTG  200

seq1  TTTGTACAAAACTACTTACATTATTTATTCAATGGTAATTTCCTAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACAAAACTACTTACATTATTTATTCAATGGTAATTTCCTAGGAAA  250

seq1  ACTGGAGAGATGGGGTTATTTTTCATATAAACCGATGATGCTCAGACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAGATGGGGTTATTTTTCATATAAACCGATGATGCTCAGACTCT  300

seq1  CCTAAAGCAGAGGGTGACATGCACGTAAGGATCAGTAGGCTTGCGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCAGAGGGTGACATGCACGTAAGGATCAGTAGGCTTGCGAGGCA  350

seq1  CTCTTCCCTGAAAAGCAATCTAAGAATAGATCATAGGCAGCACAAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCTGAAAAGCAATCTAAGAATAGATCATAGGCAGCACAAAAATA  400

seq1  TACTTGACAACAGTTTAATGGTCTTGATGGAGTAACTGGTGTATTGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACAACAGTTTAATGGTCTTGATGGAGTAACTGGTGTATTGTGCA  450

seq1  TATAAGACTTATATATGTGTTTCTATGCTCAAAACACACCTAAACTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACTTATATATGTGTTTCTATGCTCAAAACACACCTAAACTGACA  500

seq1  CAAATACACTGTACACAAATTCTGATGTGGCCTTTCTTCCCCCTTAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACACTGTACACAAATTCTGATGTGGCCTTTCTTCCCCCTTAGGGA  550

seq1  ATATTTCAGTGATACTGATGAATTATCATTTAGTTTAATAAATATAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAGTGATACTGATGAATTATCATTTAGTTTAATAAATATAAAAT  600

seq1  GAGCAGTATTAATAAGTAGCTGTCACTTTAACAGAATAAATGCCTGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTATTAATAAGTAGCTGTCACTTTAACAGAATAAATGCCTGAAAT  650

seq1  GCTTTTTTTTTTTTTTTTTAATCATAAGGTCAAAAGCTATCCTAAACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTTTTTTTTTTTTAATCATAAGGTCAAAAGCTATCCTAAACCTC  700

seq1  TGAAATGTGCACGTAACTTCTAAGAGTTCCCAGTCAGATGGTAACAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTGCACGTAACTTCTAAGAGTTCCCAGTCAGATGGTAACAATTC  750

seq1  TTATTTTGTCCTCCAATATTTAGCCCATGCTCCTCTTTCTGAGGATATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTCCTCCAATATTTAGCCCATGCTCCTCTTTCTGAGGATATTG  800

seq1  GCAATGAGGTTTAGACTGAGAAATTTAAGAAGGACGGGCACCTCCTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAGGTTTAGACTGAGAAATTTAAGAAGGACGGGCACCTCCTCTCC  850

seq1  TTCCTGATTTCTAATTGGTGCAACAACAACAAAAAATTCCTGAAGAGATT  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCCTGATTTCTAATTGGTGCAACAACAAC-AAAAATTCCTGAAGAGATT  899

seq1  TTCGTCTATAAACAAAATTTATCTATTTCCTTTTTCTTCTGTAGTGAGGA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCGTCTATAAACAAAATTTATCTATTCCCTTTTTCTTCTGTAGTGAGGA  949

seq1  AAAGCTATAGTTTATTTGTTCTATGGAAAGAACAACACAATGAATATGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATAGTTTATTTGTTCTATGGAAAGAACAACACAATGAATATGTT  999

seq1  TATCCCATGGAGTGATGATTACATTCTAGAAATTCCGTGAAG-ACACTGT  1049
      |||||||||||||||||| ||||||||||||    ||||||| || ||||
seq2  TATCCCATGGAGTGATGA-TACATTCTAGAA---TCGTGAAGAACCCTGT  1045

seq1  TGGCTCTGCAAATACAACATAGAAGGAAAAGGAAGGCTTCCGAGTCAATT  1099
      | ||||||| |||||||||||||  ||||    |||||  |||||| || 
seq2  T-GCTCTGC-AATACAACATAGA--GAAA---GAGGCT--CGAGTC-ATC  1085

seq1  CTGAGATGAGAC-AGAGATGGGCGTTAGCCAAATGTGCATAGAAACTCTG  1148
       ||| ||| ||| ||| |||||| |||||  |||| ||||   | ||  |
seq2  TTGAAATG-GACAAGAAATGGGC-TTAGC--AATG-GCATTAGACCTTGG  1130

seq1  TGGCTCCGTCACTGGGTTCTCAGGATGCCTGAC  1181
      |     ||||| ||   ||||| ||||||||||
seq2  T-----CGTCA-TG---TCTCA-GATGCCTGAC  1153

seq1: chr10_115678740_115679739
seq2: B6Ng01-319P01.g_76_1083 (reverse)

seq1  GAGC-AACTGGGACAATGTCAAAGCCCTAGTGAATGGCTGCCCTTCATTA  49
      |||| ||||||||||||||||||||||||| ||| ||||||| |||| ||
seq2  GAGCAAACTGGGACAATGTCAAAGCCCTAG-GAAAGGCTGCCTTTCAATA  49

seq1  ACCCCAAC-ACCATGGCTG-CCATTCTCCCAGAACTGCCCAGGGTCCT-A  96
      ||| ||||  |||| |||| |||||||||||||| ||||||||||||| |
seq2  ACCACAACGCCCATAGCTGACCATTCTCCCAGAAATGCCCAGGGTCCTAA  99

seq1  TGTTAAA-GTGCTACAGGGTTCCTCCCCTGGAGGTGCAAGAGAGAACTTC  145
      ||||||| |||||||||||||||||||||||||||||||||||| || ||
seq2  TGTTAAAGGTGCTACAGGGTTCCTCCCCTGGAGGTGCAAGAGAG-ACATC  148

seq1  TTTTT-AAGTTTAATTTCTTGGTACC-ATTCTCAGA-TTCCACTGTGCCC  192
      ||||| ||||| |||||||||||||| ||||||||| |||||||||||||
seq2  TTTTTAAAGTTAAATTTCTTGGTACCAATTCTCAGATTTCCACTGTGCCC  198

seq1  ACAGGAGAACTGTGTGGATCTGGGGT-AAGCTAGGATACCTTTTCAAAAA  241
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAGGAGAACTGTGTGGATCTGGGGTAAAGCTAGGATACCTTTTCAAAAA  248

seq1  TAATTCTCACACTGAATTGTTGTTGAGGATTTTGTTTTTCTCTTTGGCTG  291
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAATTCTCACACTGAATTGTTGTTGAAGATTTTGTTTTTCTCTTTGGCTG  298

seq1  C-AAATTCACATGGAGATGTACTTTATTGGGTGTTGTTGTTGTTGTTTTT  340
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCACATGGAGATGTACTTTATTGGGTGTTGTTGTTGTTGTTTTT  348

seq1  TTTACTGTTTGGTCTCTTATCCTTTTTTAATCTTTGAGATACACTCCCAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTTTGGTCTCTTATCCTTTTTTAATCTTTGAGATACACTCCCAG  398

seq1  GGACATGAGAATCGAGTGTGTTATATATTTGCTGTGTAACCTGCTACTTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGAGAATCGAGTGTGTTATATATTTGCTGTGTAACCTGCTACTTG  448

seq1  TTTATTTCCTGTAGGCAGTCATAATTCCAAAAGTGCATGACATGTTTTTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCTGTAGGCAGTCATAATTCCAAAAGTGCATGACATGTTTTTA  498

seq1  ACCATCCCTTCACTGTTAAATTAAAATAAAATTCCTCATGCCTAGGCTCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCTTCACTGTTAAATTAAAATAAAATTCCTCATGCCTAGGCTCC  548

seq1  TCAAGGATACGCATGTAATATCATATAGGAAACGCTAATGTTTTACAGAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGATACGCATGTAATATCATATAGGAAACGCTAATGTTTTACAGAG  598

seq1  CAAAATAACACTGAGAAGCCTGCTCTAGAGGAATATGCTGCAAATCCACA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACACTGAGAAGCCTGCTCTAGAGGAATATGCTGCAAATCCACA  648

seq1  CCACCAGGAAGATGCCGGTTACTGAACACTGGCCAGCTCTCAATTGTGTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGAAGATGCCGGTTACTGAACACTGGCCAGCTCTCAATTGTGTT  698

seq1  CAGTGTCATTGTTTAAAATAGAAAAACCTCATTTCCTCCAGAGAATGCAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCATTGTTTAAAATAGAAAAACCTCATTTCCTCCAGAGAATGCAG  748

seq1  AGGCGGACGTATCTTTAGAAGTTCCCACGCTTTATATGTTTATAACTGTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGACGTATCTTTAGAAGTTCCCACGCTTTATATGTTTATAACTGTT  798

seq1  TACTTTCTAACAAATACAGGCGTGCATGATCACCATCTTCTTTTTAGCAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTAACAAATACAGGCGTGCATGATCACCATCTTCTTTTTAGCAA  848

seq1  TCCCAATAATCTTTTATTTTTTACAATGTGGGAATATACAAAAAAATAAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATAATCTTTTATTTTTTACAATGTGGGAATATACAAAAAAATAAA  898

seq1  AGTAATCTAGAACTGAAAAATAAGTTCTTATAATGAAAGAGACCTAGCTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCTAGAACTGAAAAATAAGTTCTTATAATGAAAGAGACCTAGCTG  948

seq1  CAGGCAATTTTGAGTTCTTTTTTTTTTTTTAAAAAATGAATCTCGACATG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATTTTGAGTTCTTTTTTTTTTTTTAAAAAATGAATCTCGACATG  998

seq1  AAGAGAATTC  1000
      ||||||||||
seq2  AAGAGAATTC  1008