BAC Information

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BAC

Clone NameB6Ng01-320F03
Chromosome2 (Build37)10 (Build37)
Map Location 45,976,773 - 45,977,857112,084,651 - 112,085,426
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042661, LOC100041337, LOC666604
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320F03.bB6Ng01-320F03.g
ACCGA109718GA109719
length1,0661,070
definitionB6Ng01-320F03.b B6Ng01-320F03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,976,773 - 45,977,857)(112,084,651 - 112,085,426)
sequence
gaattccaaaagagttttagacctttctcttttcttacaaagtaattaaa
agtacttgtaagagattagatagaataatatttgtccttctcaggttatg
tttaaatgacaggaggaggccactgctttagattgtccttctgtactaag
ccccagtggaccagatcaaactaaactggggtgactcatgctgagtacca
catagaaacctagaactttcaaggacacaaagaggatctttaaacagaga
ggttgttttctgaagacagagattccaatttcctgagccagctacaaaga
tgtcacctctactacagcccttacaaaaagtaacctcaatactttaatac
actatattaaacaattagtttatctttcccaaaatgctctttttccttgc
ttctccttcataaaacatagtagtatttgatttgactcgtgggagacttc
tttctatttctttttaaaatggaaattgcccttccctgagatatttcact
caaaacctctaaagaaaaattgccaaattttgccctttaacatattttaa
cctttaatttgttcaattaccaatttctatagtcctaggataagtgatca
aaatttgactataggttaattattaaaatttatgatattataacaattga
tattcataattattatttcctactttcaagtaaggagtaaagtaaaatga
atcatgctcacctcccatggctaaataaattctcattttttgtttgttca
attaaatatacattgaaatatatgtgtgaaagcacaaaccttcaaatgag
gtgattctgaaagcagtggaagagagaagccagtgggagtcagcaaacaa
ggaccatggaaaggaggtacttcacaggtttttttctttatattagacat
gagtaggattttctatttgaagaaacaaatctgcccattaaaaatcaatg
tttttcatgatacatgcttatatttctgacacaacctttgctaaagtagt
atatttatgtagtacatgcacgtactttagaataaactgcatttatccat
actagggatctgactt
gcaggaccttaggaagtgcttcaggagagctaatctctccccaagtgtta
cagctcttatgacaaaggctcagaggaaggagtaggtctcgaaccattta
ttccctggataggaattatatacagttttggggatgattcagtgtttgac
agcagatacttctcattgacttgaactgagagtttggggaaaccttattt
gcatatgggagggcttggtgcagctactacgtgattgatgtcacataagc
atacctctctgcggaggggggggggctggaggaggttgctctttaaatag
ttatttgttgattcatctatcttgagactggttctcatgtaactcagact
gccttcaaacctagtctgtagccgacaatatcctaaactcccgatcctga
tattacaggcatgggtcatcaggtacatacatactgttaatcttaataac
actaaagaaagatgagagtgttttaaaagtaagtatagagctctaatgag
cttaaagtcatgagtctacaaagaaaacacctactgactactagacactg
tagcttacagcttatgtgcagtatttaattcttaaaacaaaacagggtag
atccattatgaaacccttatcttgaagctagcagaattaaatttcaataa
gtttcattaacttgctttaatggcacaaaataaatagtaagagatctgac
acctaaatatgtctggcttttgctcccataacttactagtccataaggag
agtgaaggcttccaaacttaccattaaataacagagcattacgacatatt
gaaagataaatgatcagctttagctcaataaaaatattgctaccactcct
tttctactcatctgcagcaaacagttacccacactaattgcatttaatct
tccctgaactaccgttagggaataattttgagataatacataataataat
tcagtacaaatcttatcagcccttaatgaaacctttccttcctatcctat
gctacttcacttattcatattcttagaatgcctataatgtcatgaaattt
cccaataagattcatgtagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45976773_45977857
seq2: B6Ng01-320F03.b_45_1110

seq1  GAATTCCAAAAGAGTTTTAGACCTTTCTCTTTTCTTACAAAGTAATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAGAGTTTTAGACCTTTCTCTTTTCTTACAAAGTAATTAAA  50

seq1  AGTACTTGTAAGAGATTAGATAGAATAATATTTGTCCTTCTCAGGTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGTAAGAGATTAGATAGAATAATATTTGTCCTTCTCAGGTTATG  100

seq1  TTTAAATGACAGGAGGAGGCCACTGCTTTAGATTGTCCTTCTGTACTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGACAGGAGGAGGCCACTGCTTTAGATTGTCCTTCTGTACTAAG  150

seq1  CCCCAGTGGACCAGATCAAACTAAACTGGGGTGACTCATGCTGAGTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGGACCAGATCAAACTAAACTGGGGTGACTCATGCTGAGTACCA  200

seq1  CATAGAAACCTAGAACTTTCAAGGACACAAAGAGGATCTTTAAACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAACCTAGAACTTTCAAGGACACAAAGAGGATCTTTAAACAGAGA  250

seq1  GGTTGTTTTCTAAAGACAGAGATTCCAATTTCCTGAGCCAGCTACAAAGA  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTTCTGAAGACAGAGATTCCAATTTCCTGAGCCAGCTACAAAGA  300

seq1  TGTCACCTCTACTACAGCCCTTACAAAAAGTAACCTCAATACTTTAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTCTACTACAGCCCTTACAAAAAGTAACCTCAATACTTTAATAC  350

seq1  ACTATATTAAACAATTAGTTTATCTTTCCCAAAATGCTCTTTTTCCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTAAACAATTAGTTTATCTTTCCCAAAATGCTCTTTTTCCTTGC  400

seq1  TTCTCCTTCATAAAACATAGTAGTATTTGATTTGACTCGTGGGAGACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCATAAAACATAGTAGTATTTGATTTGACTCGTGGGAGACTTC  450

seq1  TTTCTATTTCTTTTTAAAATGGAAATTGCCCTTCCCTGAGATATTTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTCTTTTTAAAATGGAAATTGCCCTTCCCTGAGATATTTCACT  500

seq1  CAAAACCTCTAAAGAAAAATTGCCAAATTTTGCCCTTTAACATATTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTCTAAAGAAAAATTGCCAAATTTTGCCCTTTAACATATTTTAA  550

seq1  CCTTTAATTTGTTCAATTACCAATTTCTATAGTCCTAGGATAAGTGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATTTGTTCAATTACCAATTTCTATAGTCCTAGGATAAGTGATCA  600

seq1  AAATTTGACTATAGGTTAATTATTAAAATTTATGATATTATAACAATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGACTATAGGTTAATTATTAAAATTTATGATATTATAACAATTGA  650

seq1  TATTCATAATTATTATTTCCTACTTTCAAGTAAGGAGTAAAGTAAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAATTATTATTTCCTACTTTCAAGTAAGGAGTAAAGTAAAATGA  700

seq1  ATCATGCTCACCTCCCATGGCTAAATAAATTCTCATTTTTTGTTTGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCTCACCTCCCATGGCTAAATAAATTCTCATTTTTTGTTTGTTCA  750

seq1  ATTAAATATACATTGAAATATATGTGTGAAAGCACAAACCTTCAAATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATACATTGAAATATATGTGTGAAAGCACAAACCTTCAAATGAG  800

seq1  GTGATTCTGAAAGCAGTGGAAGAGAGAAGCCAGTGGGAGTCAGCAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTGAAAGCAGTGGAAGAGAGAAGCCAGTGGGAGTCAGCAAACAA  850

seq1  GGACCATGG-AAGGAGGTACTTCACAGGTTTTTTTCTTTATATTAGAACA  899
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  GGACCATGGAAAGGAGGTACTTCACAGGTTTTTTTCTTTATATTAG-ACA  899

seq1  TGAGTAGGATTTTCTATTTGAAGAAACAAATCTGCCCATTAAAAATCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGGATTTTCTATTTGAAGAAACAAATCTGCCCATTAAAAATCAAT  949

seq1  GTTTTTCATGATACATGCTTATTATTTCTGACACAACC-TTGCTAAAGTA  998
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  GTTTTTCATGATACATGCTTA-TATTTCTGACACAACCTTTGCTAAAGTA  998

seq1  GTATAATTTATGTAAGTACATGCACAGTAATTTTAGAATAAAACTGCCAT  1048
      |||| |||||||| ||||||||||| || | |||||||| |||||| |||
seq2  GTAT-ATTTATGT-AGTACATGCAC-GT-ACTTTAGAAT-AAACTG-CAT  1042

seq1  TTATTCCATACTTAGGGAATTCTGGCCTTCCTGACTT  1085
      ||| ||||||| ||||||  |||| | |         
seq2  TTA-TCCATAC-TAGGGA--TCTGACTT---------  1066

seq1: chr10_112084651_112085426
seq2: B6Ng01-320F03.g_362_1143 (reverse)

seq1  ACTACATGATTCTTTATGGGAAA-TTCATGACATTAATAGGCA-TCTAAA  48
      ||||||||| ||||  ||||||| ||||||||||| ||||||| ||||| 
seq2  ACTACATGAATCTTATTGGGAAATTTCATGACATT-ATAGGCATTCTAAG  49

seq1  GATATGAATAAGTGAAGTAGCATA-GATAAGAAGGGAA-GTTTCATT-AG  95
       ||||||||||||||||||||||| |||| ||||| || |||||||| ||
seq2  AATATGAATAAGTGAAGTAGCATAGGATAGGAAGGAAAGGTTTCATTAAG  99

seq1  GGCTGGATAAGATTTGTACTGAATTATTA-TATGTATTATCTCAAAATTA  144
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCT-GATAAGATTTGTACTGAATTATTATTATGTATTATCTCAAAATTA  148

seq1  -TCCCTAACGTTAGTTCAGGGAAGATTAAATGCCATTAGTGTGGGTAACT  193
       ||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  TTCCCTAACGGTAGTTCAGGGAAGATTAAATGCAATTAGTGTGGGTAACT  198

seq1  GTTTGCTGCAGATGAGTAG-AAAGGAGTGGTAGCAATATTTTTTATTGAG  242
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  GTTTGCTGCAGATGAGTAGAAAAGGAGTGGTAGCAATA-TTTTTATTGAG  247

seq1  CTAAAGCTGATCATTTATCTTTC-ATATGTCGTAATGCTCTGTTATTTAA  291
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTAAAGCTGATCATTTATCTTTCAATATGTCGTAATGCTCTGTTATTTAA  297

seq1  TGGTAAGTTTGGAAGCCTTCACTCTCCTTATGGACTAGTAAGTTATGGGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTTTGGAAGCCTTCACTCTCCTTATGGACTAGTAAGTTATGGGA  347

seq1  GCAAAAGCCAGACATATTTAGGTGTCAGATCTCTTACTATTTATTTTGTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGCCAGACATATTTAGGTGTCAGATCTCTTACTATTTATTTTGTG  397

seq1  CCATTAAAGCAAGTTAATGAAACTTATTGAAATTTAATTCTGCTAGCTTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAAGCAAGTTAATGAAACTTATTGAAATTTAATTCTGCTAGCTTC  447

seq1  AAGATAAGGGTTTCATAATGGATCTACCCTGTTTTGTTTTAAGAATTAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGGGTTTCATAATGGATCTACCCTGTTTTGTTTTAAGAATTAAA  497

seq1  TACTGCACATAAGCTGTAAGCTACAGTGTCTAGTAGTCAGTAGGTGTTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCACATAAGCTGTAAGCTACAGTGTCTAGTAGTCAGTAGGTGTTTT  547

seq1  CTTTGTAGACTCATGACTTTAAGCTCATTAGAGCTCTATACTTACTTTTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGACTCATGACTTTAAGCTCATTAGAGCTCTATACTTACTTTTA  597

seq1  AAACACTCTCATCTTTCTTTAGTGTTATTAAGATTAACAGTATGTATGTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTCTCATCTTTCTTTAGTGTTATTAAGATTAACAGTATGTATGTA  647

seq1  CCTGATGACCCATGCCTGTAATATCAGGATCGGGAGTTTATGATATTCTC  691
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  CCTGATGACCCATGCCTGTAATATCAGGATCGGGAGTTTAGGATATTGTC  697

seq1  GGCTACAGACTAGGTTTGAAGGCAGTCTGAGTTACATGAGAACCCGTCTC  741
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCTACAGACTAGGTTTGAAGGCAGTCTGAGTTACATGAGAACCAGTCTC  747

seq1  AAGATAGATGAATAAACAAATAACTATTTAAAGAG  776
      ||||||||||||| |||||||||||||||||||||
seq2  AAGATAGATGAATCAACAAATAACTATTTAAAGAG  782