BAC Information

Click to search

BAC

Clone NameB6Ng01-323A10
Chromosome10 (Build37)
Map Location 3,824,372 - 3,910,375
singlet/doubletdoublet
Overlap geneLOC237252
Upstream geneCnksr3, Oprm1, A130090K04Rik
Downstream geneLOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323A10.bB6Ng01-323A10.g
ACCGA111712GA111713
length1,129924
definitionB6Ng01-323A10.b B6Ng01-323A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,909,249 - 3,910,375)(3,824,372 - 3,825,297)
sequence
gaattcctttggctatagtcttcagagaatcggagacaaaaagaaacaga
tgtgcctgcccagagggatgagagcagagccccagacctctagggcaata
cttttatcaattttcacagagaaaagatggagagaagagagaacagaacc
agccaacacttcttagggaggagggagcagaagaggaagtcgctattctc
aggctctgcctttagaagctgggaaatgccaggaggctttgtacagactt
catttccaactaggagctgcaggagacagtgactgctcgagattcttcac
cctagaccttagcacaaaacctctccccatcctgatgagctgagctctgt
gtgcaagaagaagtccattaaaatacagaaataagaaccctgtatttagc
aagcaggagataatttatttgttcacgcattcaagttactgttataatgc
attgctagatgctcttgcagagagcaaaatttttcacccagttgcaaata
tgaaaatcatttccaggttctttgagtcattattttgaatcagtctcata
gcctgctctgtcagtttctgtaatgttccctacacaaagccattcattca
tcaccttccggcctatgtgtttccctagctaaggaaagtaatctgaccat
attattaaggaataatgatgtgtcaattcttttcattaaaacaaaaccac
tcgacatttttatgaatatgatcaatcatcacattttcattttaatgtgg
tttaggaagaaataatttctactttcatggtattaactctcatcttttta
tataaggaatatttcacagtgtctattgttttaagagtgtgtttcaatgt
tattcattttaaatgaatattcaccaaaggaatgtaagaaaaattcctat
atcatattgtctctgttagatcccaaactccaaaggcagtgcatatgagt
ggaggcttgctggagattagatcaagcccactctcatcatttcctcggga
tttttattgtaaaggggttcccttttgccaggcagaaccattttcctagt
gacacatacaagcccctgcttaactccaggttctctggtccttcactgac
agtactatggtgcaatatcaaagaacact

gaattcttccttagtctttgccattagtctttgatatttttgaaaagtac
aggtcagtttttgttgttgatgttgtgaaatgtccactgtgatttgcctt
gtgtttccctgagattagacaaaagcctatccatctgtggtcgggagatg
caagccatggtgctgatgctcattgtatgtgagtggcatgcatttccctc
cagccctctctgatactttgctagtcttcatttcctctgggaactatcac
tctgtcttcactaagcgtgaattaattctttcttctactattattaagga
ctattttgaaatgaggcacctactctgttcctgctcaaactttgttaatt
taattatattttcatagattttttttcaaactgatcatgttatttatgct
tgtgctcaaattatccccaatttatctgcagggagtcattcaagctggct
tttctcttattgctatgtgtccccattattttatgagtacctctaaaata
tattctgtaacagaaagtatcaggctcatcttgcaattctctgaacaatt
tctaaattcaaggattttattccagagaaaaaataacctgagtttactga
cctgagtccttgtgttcatgtgcttttgcaagaaggaggatgcccagtga
tgtttttagttgaccgagctagggatttgtgtacatgtattcatattagg
atatttatatttgttctagattatatttattcgtgggtttatttcttttt
tggggggattgggttttttgagacagggtttccctggtataatcctggct
gtcctggaactcactttgtaaaccaggctggcctgaaactcagaatccat
ctgcctctgctccccgagtgctgggaataaaggcgtgcacaccacgctcc
tgcttcatggttatttctttatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_3909249_3910375
seq2: B6Ng01-323A10.b_46_1174 (reverse)

seq1  AGTG-TCTTTGATA-TGCACCATAGGTACTTGTCAGTG-AGGACCAGAGG  47
      |||| ||||||||| ||||||||| |||| |||||||| ||||||||| |
seq2  AGTGTTCTTTGATATTGCACCATA-GTAC-TGTCAGTGAAGGACCAGA-G  47

seq1  ACCCTGGAGGTTAGCAGGGGCTTTGGTATGTGTCACTAGGGAAATGGTTC  97
      | ||||||| | |||||||||||  ||||||||||||||| |||||||||
seq2  AACCTGGAGTTAAGCAGGGGCTT--GTATGTGTCACTAGGAAAATGGTTC  95

seq1  TGCCTGGC-AAAGGGAAACCCTTTACA--TAAAATCCCGAGG-AATGATG  143
      |||||||| |||||||| |||||||||   |||||||||||| |||||||
seq2  TGCCTGGCAAAAGGGAACCCCTTTACAATAAAAATCCCGAGGAAATGATG  145

seq1  AGAGTGGGCTTGATCTAATCTCCAGCAAGCCTCCACTCATATGCACTGCC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGCTTGATCTAATCTCCAGCAAGCCTCCACTCATATGCACTGCC  195

seq1  TTTGGAGTTTGGGATCTAACAGAGACAATATGATATAGGAATTTTTCTTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTTTGGGATCTAACAGAGACAATATGATATAGGAATTTTTCTTA  245

seq1  CATTCCTTTGGTGAATATTCATTTAAAATGAATAACATTGAAACACACTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTGGTGAATATTCATTTAAAATGAATAACATTGAAACACACTC  295

seq1  TTAAAACAATAGACACTGTGAAATATTCCTTATATAAAAAGATGAGAGTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAATAGACACTGTGAAATATTCCTTATATAAAAAGATGAGAGTT  345

seq1  AATACCATGAAAGTAGAAATTATTTCTTCCTAAACCACATTAAAATGAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATGAAAGTAGAAATTATTTCTTCCTAAACCACATTAAAATGAAA  395

seq1  ATGTGATGATTGATCATATTCATAAAAATGTCGAGTGGTTTTGTTTTAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATGATTGATCATATTCATAAAAATGTCGAGTGGTTTTGTTTTAAT  445

seq1  GAAAAGAATTGACACATCATTATTCCTTAATAATATGGTCAGATTACTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAATTGACACATCATTATTCCTTAATAATATGGTCAGATTACTTT  495

seq1  CCTTAGCTAGGGAAACACATAGGCCGGAAGGTGATGAATGAATGGCTTTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTAGGGAAACACATAGGCCGGAAGGTGATGAATGAATGGCTTTG  545

seq1  TGTAGGGAACATTACAGAAACTGACAGAGCAGGCTATGAGACTGATTCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGAACATTACAGAAACTGACAGAGCAGGCTATGAGACTGATTCAA  595

seq1  AATAATGACTCAAAGAACCTGGAAATGATTTTCATATTTGCAACTGGGTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGACTCAAAGAACCTGGAAATGATTTTCATATTTGCAACTGGGTG  645

seq1  AAAAATTTTGCTCTCTGCAAGAGCATCTAGCAATGCATTATAACAGTAAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTGCTCTCTGCAAGAGCATCTAGCAATGCATTATAACAGTAAC  695

seq1  TTGAATGCGTGAACAAATAAATTATCTCCTGCTTGCTAAATACAGGGTTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGCGTGAACAAATAAATTATCTCCTGCTTGCTAAATACAGGGTTC  745

seq1  TTATTTCTGTATTTTAATGGACTTCTTCTTGCACACAGAGCTCAGCTCAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGTATTTTAATGGACTTCTTCTTGCACACAGAGCTCAGCTCAT  795

seq1  CAGGATGGGGAGAGGTTTTGTGCTAAGGTCTAGGGTGAAGAATCTCGAGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGGGAGAGGTTTTGTGCTAAGGTCTAGGGTGAAGAATCTCGAGC  845

seq1  AGTCACTGTCTCCTGCAGCTCCTAGTTGGAAATGAAGTCTGTACAAAGCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGTCTCCTGCAGCTCCTAGTTGGAAATGAAGTCTGTACAAAGCC  895

seq1  TCCTGGCATTTCCCAGCTTCTAAAGGCAGAGCCTGAGAATAGCGACTTCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCATTTCCCAGCTTCTAAAGGCAGAGCCTGAGAATAGCGACTTCC  945

seq1  TCTTCTGCTCCCTCCTCCCTAAGAAGTGTTGGCTGGTTCTGTTCTCTCTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCTCCCTCCTCCCTAAGAAGTGTTGGCTGGTTCTGTTCTCTCTT  995

seq1  CTCTCCATCTTTTCTCTGTGAAAATTGATAAAAGTATTGCCCTAGAGGTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATCTTTTCTCTGTGAAAATTGATAAAAGTATTGCCCTAGAGGTC  1045

seq1  TGGGGCTCTGCTCTCATCCCTCTGGGCAGGCACATCTGTTTCTTTTTGTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCTGCTCTCATCCCTCTGGGCAGGCACATCTGTTTCTTTTTGTC  1095

seq1  TCCGATTCTCTGAAGACTATAGCCAAAGGAATTC  1127
      ||||||||||||||||||||||||||||||||||
seq2  TCCGATTCTCTGAAGACTATAGCCAAAGGAATTC  1129


seq1: chr10_3824372_3825297
seq2: B6Ng01-323A10.g_62_985

seq1  GAATTCTTCCTTAGTCTTTGCCATTAGTCTTTGATATTTTTGAAAAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTAGTCTTTGCCATTAGTCTTTGATATTTTTGAAAAGTAC  50

seq1  AGGTCAGTTTTTGTTGTTGATGTTGTGAAATGTCCACTGTGATTTGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGTTTTTGTTGTTGATGTTGTGAAATGTCCACTGTGATTTGCCTT  100

seq1  GTGTTTCCCTGAGATTAGACAAAAGCCTATCCATCTGTGGTCGGGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCCTGAGATTAGACAAAAGCCTATCCATCTGTGGTCGGGAGATG  150

seq1  CAAGCCATGGTGCTGATGCTCATTGTATGTGAGTGGCATGCATTTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCATGGTGCTGATGCTCATTGTATGTGAGTGGCATGCATTTCCCTC  200

seq1  CAGCCCTCTCTGATACTTTGCTAGTCTTCATTTCCTCTGGGAACTATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCTCTGATACTTTGCTAGTCTTCATTTCCTCTGGGAACTATCAC  250

seq1  TCTGTCTTCACTAAGCGTGAATTAATTCTTTCTTCTACTATTATTAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCACTAAGCGTGAATTAATTCTTTCTTCTACTATTATTAAGGA  300

seq1  CTATTTTGAAATGAGGCACCTACTCTGTTCCTGCTCAAACTTTGTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGAAATGAGGCACCTACTCTGTTCCTGCTCAAACTTTGTTAATT  350

seq1  TAATTATATTTTCATAGATTTTTTTTCAAACTGATCATGTTATTTATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATATTTTCATAGATTTTTTTTCAAACTGATCATGTTATTTATGCT  400

seq1  TGTGCTCAAATTATCCCCAATTTATCTGCAGGGAGTCATTCAAGCTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAAATTATCCCCAATTTATCTGCAGGGAGTCATTCAAGCTGGCT  450

seq1  TTTCTCTTATTGCTATGTGTCCCCATTATTTTATGAGTACCTCTAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTATTGCTATGTGTCCCCATTATTTTATGAGTACCTCTAAAATA  500

seq1  TATTCTGTAACAGAAAGTATCAGGCTCATCTTGCAATTCTCTGAACAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTAACAGAAAGTATCAGGCTCATCTTGCAATTCTCTGAACAATT  550

seq1  TCTAAATTCAAGGATTTTATTCCAGAGAAAAAATAACCTGAGTTTACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTCAAGGATTTTATTCCAGAGAAAAAATAACCTGAGTTTACTGA  600

seq1  CCTGAGTCCTTGTGTTCATGTGCTTTTGCAAGAAGGAGGATGCCCAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCCTTGTGTTCATGTGCTTTTGCAAGAAGGAGGATGCCCAGTGA  650

seq1  TGTTTTTAGTTGACCGAGCTAGGGATTTGTGTACATGTATTCATATTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAGTTGACCGAGCTAGGGATTTGTGTACATGTATTCATATTAGG  700

seq1  ATATTTATATTTGTTCTAGATTATATTTATTCGTGGGTTTATTTCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATATTTGTTCTAGATTATATTTATTCGTGGGTTTATTTCTTTTT  750

seq1  TGGGGGGATTGGGTTTTTTGAGACAGGGTTTCCCT-GTATAATCCTGGCT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGGGGATTGGGTTTTTTGAGACAGGGTTTCCCTGGTATAATCCTGGCT  800

seq1  GTCCTGGAACTCACTTTGTAAACCAGGCTGGCCTGGAACTCAGAAATCCA  849
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  GTCCTGGAACTCACTTTGTAAACCAGGCTGGCCTGAAACTCAG-AATCCA  849

seq1  CCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACGCT  899
       ||||||||||  |||||||||||||| |||||||||||| |||||||||
seq2  TCTGCCTCTGCTCCCCGAGTGCTGGGAATAAAGGCGTGCA-CACCACGCT  898

seq1  -CTGCTTCATGGGTTTATTTCTTTATCA  926
       |||||||||||  ||||||||||||||
seq2  CCTGCTTCATGG--TTATTTCTTTATCA  924


| Home | SequenceCutter | Blast | Download |