BAC Information

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BAC

Clone NameB6Ng01-323E12
Chromosome10 (Build37)
Map Location 53,084,607 - 53,255,177
singlet/doubletdoublet
Overlap geneEG432460
Upstream geneGopc, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1, Pln
Downstream geneMcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323E12.bB6Ng01-323E12.g
ACCGA111902GA111903
length9361,061
definitionB6Ng01-323E12.b B6Ng01-323E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,084,607 - 53,085,542)(53,254,126 - 53,255,177)
sequence
gaattcctcaccaactgaaaatctcaccctctaattctttgcagctccaa
caacatccatgagcatctagctcccgcaccatccagaacaacgaggcaca
cttacttacctcctccccatacacgacgagtctactctgtaagtccaatc
caactgcgtcctttgaactctttcaaagacttaactgctctttctttatc
attcttccatgagattaaatgactttcctcattcccaaaatgaggtttaa
attccagcacaccattttctaaagtgcattaattcatacttagaacttcc
ttctgcttcgccacactggaaagtgaatgacaacctttttatctaagtgt
ccccaactagcctgagacctgtgcactcaggcaaagtgtcaacaaatgaa
gtcactgtaagcactggatatccaataaatgttcactgaataaaattaga
attttgggagactcacaattacacctacaaaaatatccttccctttagaa
gaaggattaaaacaagaactttgttaggaagttctgtttattttaaaatc
caagatattttcaactaccctttaacccagtatgcatttacatacctatt
taaaaatcagtaaatatttaccaaaatagcttttaaaacgtaagtttaaa
atgttgaagagctagtgatgaaaactcttaagaattatgggaaatactct
ggaataagtcaaaagacataaaaagtatctcacacacaacagagcattaa
accatatagaaaaatattctcaatatagaggagggaaagtaagttttcct
tatgggtgtggacattggcaggccaaccctgtggtagtggagagccccac
acccaaacaggcagccaaacagaattcaatggactacttttaaaaagaaa
aaataggaccaaaggccagttgggaggaaagtaaga

gaattcactgatacaatcatcttgctttgtgtcctagttattactattac
catgatgaagcaccatgaccaaaagcaagtagagaacgaagagggtttgt
tgggctttatttctacatcacagtccatcacacacaagcccagcagcctg
ggccaatggtagagattctggccagccccccacatcctcatctcctagtg
ggcttaaggttcgaggtaccataactctccaactttgtaatgcagggaat
ttgggagaccgtagatttctaagtgcacttgaatcatctttgccgaggaa
ccatttaagctgcttgatgacagcaagccagttccaaacacacaagccac
tcattgctaacagtggtgatgtacagataaggctacagaatgcagagggg
attggctactgtcctgctggattcccagctccatttgctcgtgtatatgt
tgatctttgtagctgttagaaatacttagatgagagccaaatgggtggga
atgcaaggagggtgttaaaatattttacatttttccagtttttttttaac
taactgtacagttgccaacaaaggagggactagatccactttgaagagac
aaaaacacataaatttcagacctgctttaatccttagaatgatacagaag
ttgtagtccataatagttttaaacccgaaattacaaagttgatttctaat
gatatggtttatcattgttagaaattatgttttaaggtggagaatgtagc
caagtgttgtggctgtgttcctataatcctagcctttcggagatggaggc
aggagaatggcaagctttaggccagtctaagatatataatgaattaaaag
aaccctgggctatgaacagacatcctgtctcaaaacaaaaaacaaacaga
catgtcatgctcaagctcctaaaacggttttggaccttgtagcattctgg
ttatttttggtttcttttaaaaccacagaaaataagataagtttttgttt
taatcctgaggtattatggataatggggcttgctttcgacttatccaaag
gcaagctgacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53084607_53085542
seq2: B6Ng01-323E12.b_45_980

seq1  GAATTCCTCACCAACTGAAAATCTCACCCTCTAATTCTTTGCAGCTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACCAACTGAAAATCTCACCCTCTAATTCTTTGCAGCTCCAA  50

seq1  CAACATCCATGAGCATCTAGCTCCCGCACCATCCAGAACAACGAGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCATGAGCATCTAGCTCCCGCACCATCCAGAACAACGAGGCACA  100

seq1  CTTACTTACCTCCTCCCCATACACGACGAGTCTACTCTGTAAGTCCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTACCTCCTCCCCATACACGACGAGTCTACTCTGTAAGTCCAATC  150

seq1  CAACTGCGTCCTTTGAACTCTTTCAAAGACTTAACTGCTCTTTCTTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCGTCCTTTGAACTCTTTCAAAGACTTAACTGCTCTTTCTTTATC  200

seq1  ATTCTTCCATGAGATTAAATGACTTTCCTCATTCCCAAAATGAGGTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCATGAGATTAAATGACTTTCCTCATTCCCAAAATGAGGTTTAA  250

seq1  ATTCCAGCACACCATTTTCTAAAGTGCATTAATTCATACTTAGAACTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGCACACCATTTTCTAAAGTGCATTAATTCATACTTAGAACTTCC  300

seq1  TTCTGCTTCGCCACACTGGAAAGTGAATGACAACCTTTTTATCTAAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTCGCCACACTGGAAAGTGAATGACAACCTTTTTATCTAAGTGT  350

seq1  CCCCAACTAGCCTGAGACCTGTGCACTCAGGCAAAGTGTCAACAAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTAGCCTGAGACCTGTGCACTCAGGCAAAGTGTCAACAAATGAA  400

seq1  GTCACTGTAAGCACTGGATATCCAATAAATGTTCACTGAATAAAATTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTAAGCACTGGATATCCAATAAATGTTCACTGAATAAAATTAGA  450

seq1  ATTTTGGGAGACTCACAATTACACCTACAAAAATATCCTTCCCTTTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGAGACTCACAATTACACCTACAAAAATATCCTTCCCTTTAGAA  500

seq1  GAAGGATTAAAACAAGAACTTTGTTAGGAAGTTCTGTTTATTTTAAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATTAAAACAAGAACTTTGTTAGGAAGTTCTGTTTATTTTAAAATC  550

seq1  CAAGATATTTTCAACTACCCTTTAACCCAGTATGCATTTACATACCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATTTTCAACTACCCTTTAACCCAGTATGCATTTACATACCTATT  600

seq1  TAAAAATCAGTAAATATTTACCAAAATAGCTTTTAAAACGTAAGTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCAGTAAATATTTACCAAAATAGCTTTTAAAACGTAAGTTTAAA  650

seq1  ATGTTGAAGAGCTAGTGATGAAAACTCTTAAGAATTATGGGAAATACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAAGAGCTAGTGATGAAAACTCTTAAGAATTATGGGAAATACTCT  700

seq1  GGAATAAGTCAAAAGACATAAAAAGTATCTCACACACAACAGAGCATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGTCAAAAGACATAAAAAGTATCTCACACACAACAGAGCATTAA  750

seq1  ACCATATAGAAAAATATTCTCAATATAGAGGAGGGAAAGTAAGTTTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATAGAAAAATATTCTCAATATAGAGGAGGGAAAGTAAGTTTTCCT  800

seq1  TATGGGTGTGGACATTGGCAGGCCAACCCTGTGGTAGTGGAGAGCCCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTGTGGACATTGGCAGGCCAACCCTGTGGTAGTGGAGAGCCCCAC  850

seq1  ACCCAAACAGGCAGCCAAACAGAATTCAATGGACTACTTTTAAAAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACAGGCAGCCAAACAGAATTCAATGGACTACTTTTAAAAAGAAA  900

seq1  AAATAGGACCAAAGGCCAGTTGGGAGGAAAGTAAGA  936
      ||||||||||||||||||||||||||||||||||||
seq2  AAATAGGACCAAAGGCCAGTTGGGAGGAAAGTAAGA  936


seq1: chr10_53254126_53255177
seq2: B6Ng01-323E12.g_65_1125 (reverse)

seq1  CGTCAGCT--GCTTTGGAT-AGTCG-AAGC-AGCCCCA-TATCCAT-ATA  43
      ||||||||   |||||||| ||||| |||| ||||||| ||||||| |||
seq2  CGTCAGCTTGCCTTTGGATAAGTCGAAAGCAAGCCCCATTATCCATAATA  50

seq1  CCTCA-GATTAAAACAAAAACTTATCTTA-TTTCTGTGGTTTTTAAAAGA  91
      ||||| ||||||||||||||||||||||| ||||||||| ||||||||||
seq2  CCTCAGGATTAAAACAAAAACTTATCTTATTTTCTGTGG-TTTTAAAAGA  99

seq1  AACCAAAA--TACCAGAATTGCTACAAGGTCCCAAAACCGTTTTA-GAGC  138
      ||||||||   ||||||| ||||||||||| |||||||||||||| ||||
seq2  AACCAAAAATAACCAGAA-TGCTACAAGGT-CCAAAACCGTTTTAGGAGC  147

seq1  TTGAGCATGACATGTCTGTTTGTTTTTTGTTTTGAGACAGGATGTCTGTT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCATGACATGTCTGTTTGTTTTTTGTTTTGAGACAGGATGTCTGTT  197

seq1  CATAGCCCAGGGTTCTTTTAATTCATTATATATCTTAGACTGGCCTAAAG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCCAGGGTTCTTTTAATTCATTATATATCTTAGACTGGCCTAAAG  247

seq1  CTTGCCATTCTCCTGCCTCCATCTCCGAAAGGCTAGGATTATAGGAACAC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATTCTCCTGCCTCCATCTCCGAAAGGCTAGGATTATAGGAACAC  297

seq1  AGCCACAACACTTGGCTACATTCTCCACCTTAAAACATAATTTCTAACAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAACACTTGGCTACATTCTCCACCTTAAAACATAATTTCTAACAA  347

seq1  TGATAAACCATATCATTAGAAATCAACTTTGTAATTTCGGGTTTAAAACT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACCATATCATTAGAAATCAACTTTGTAATTTCGGGTTTAAAACT  397

seq1  ATTATGGACTACAACTTCTGTATCATTCTAAGGATTAAAGCAGGTCTGAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGACTACAACTTCTGTATCATTCTAAGGATTAAAGCAGGTCTGAA  447

seq1  ATTTATGTGTTTTTGTCTCTTCAAAGTGGATCTAGTCCCTCCTTTGTTGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTGTTTTTGTCTCTTCAAAGTGGATCTAGTCCCTCCTTTGTTGG  497

seq1  CAACTGTACAGTTAGTTAAAAAAAAACTGGAAAAATGTAAAATATTTTAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTACAGTTAGTTAAAAAAAAACTGGAAAAATGTAAAATATTTTAA  547

seq1  CACCCTCCTTGCATTCCCACCCATTTGGCTCTCATCTAAGTATTTCTAAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCTTGCATTCCCACCCATTTGGCTCTCATCTAAGTATTTCTAAC  597

seq1  AGCTACAAAGATCAACATATACACGAGCAAATGGAGCTGGGAATCCAGCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAAAGATCAACATATACACGAGCAAATGGAGCTGGGAATCCAGCA  647

seq1  GGACAGTAGCCAATCCCCTCTGCATTCTGTAGCCTTATCTGTACATCACC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTAGCCAATCCCCTCTGCATTCTGTAGCCTTATCTGTACATCACC  697

seq1  ACTGTTAGCAATGAGTGGCTTGTGTGTTTGGAACTGGCTTGCTGTCATCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAGCAATGAGTGGCTTGTGTGTTTGGAACTGGCTTGCTGTCATCA  747

seq1  AGCAGCTTAAATGGTTCCTCGGCAAAGATGATTCAAGTGCACTTAGAAAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTAAATGGTTCCTCGGCAAAGATGATTCAAGTGCACTTAGAAAT  797

seq1  CTACGGTCTCCCAAATTCCCTGCATTACAAAGTTGGAGAGTTATGGTACC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGTCTCCCAAATTCCCTGCATTACAAAGTTGGAGAGTTATGGTACC  847

seq1  TCGAACCTTAAGCCCACTAGGAGATGAGGATGTGGGGGGCTGGCCAGAAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACCTTAAGCCCACTAGGAGATGAGGATGTGGGGGGCTGGCCAGAAT  897

seq1  CTCTACCATTGGCCCAGGCTGCTGGGCTTGTGTGTGATGGACTGTGATGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCATTGGCCCAGGCTGCTGGGCTTGTGTGTGATGGACTGTGATGT  947

seq1  AGAAATAAAGCCCAACAAACCCTCTTCGTTCTCTACTTGCTTTTGGTCAT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAAGCCCAACAAACCCTCTTCGTTCTCTACTTGCTTTTGGTCAT  997

seq1  GGTGCTTCATCATGGTAATAGTAATAACTAGGACACAAAGCAAGATGATT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCATCATGGTAATAGTAATAACTAGGACACAAAGCAAGATGATT  1047

seq1  GTATCAGTGAATTC  1052
      ||||||||||||||
seq2  GTATCAGTGAATTC  1061


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