BAC Information

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BAC

Clone NameB6Ng01-323H04
Chromosome10 (Build37)
Map Location 88,399,928 - 88,495,946
singlet/doubletdoublet
Overlap geneTmem16d
Upstream geneTyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323H04.bB6Ng01-323H04.g
ACCGA112020GA112021
length1,2031,167
definitionB6Ng01-323H04.b B6Ng01-323H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,399,928 - 88,401,121)(88,494,769 - 88,495,946)
sequence
gaattcacgtgacctttttcaccctgaaagtgagatgagagctttgcgat
ttaatttcatcaagccgaaggatactttgagaagtaccagttttatcctt
cattcctgtttcatgagcactcctttttctcattttaaaaattcccattt
tactttcctctttgtttaggcggactcagctcaaagggcactgagtatct
gttgagggtgtttcctcacggtgttcccgtccacttctgcacagggagct
ctaggatcctcttctgttttcctctgctccccttttgtcccctggatgcc
ccacagtggccacgtcacagtctggcctggcctgtgtcggcatcacctgg
aagggctgggctgtactcctgctttctgattaagcagcactggcacagag
ccctggatttgaagtctctgtttctcgaggaagatggtggttccggtctg
tgaatcacttactgactgacgattgtgctgctaatccacagtgacctctt
tggaagctcaatctgatgaccctcttgactcaagagttgctatgtcctcc
ttgtataataaagcccacacccttcagtcagaggtttttgttttgttgtt
gttgttgttttcgagacagggtttctctgtatagccctggctgtcctgga
actcactctgtagaccaggctggccttgaattcagaaatccacctgcctc
tgcctcccaagtgctgggattaaaggcgtgtgccaccaccgcctggcaag
tcagattactgtgctgtcactttctgtgtcacactgggaaatcccatgat
gcactatgcatgctacacactcctgttttctcattattttaaatgcctcc
tcttacatgggcagcccaacaaatacctttgaaacaaatagttgctcggc
tgttagaagctagcagcatgtacctcatttcccttttcttctgtttcttt
gggtggttttatcttgtacttactgacacctttagcaatttacttcacac
atgtaggatgcactgagctctctcttcagtggtacacacgactctatttt
ctgcactgggatgttttctgttagctcggggtttttcccttccagcttca
gctcccagaataacaacctcagacttaatttttatttgacaaatgcctag
gccaagcttgcgtaattctccacctagacctcgggtaattttacacattt
tgt
gaattcctatcactattttttttgttagtagttactgtttgtcacaccac
atcattatattgtcctgagatacttccaaagacattgtgcaaatctgcca
tctgaagagaaccactgttgatattgatctcctgaatatttaattattgt
ctaaattattttttgcattaattccttaaaaatgatttgttaagacaaac
ttcagtgtactaatacacagctttctatcatattttttcagttcatgtgg
tttcataaacatactaactagcaagtaaatcactgtgaaactgtggaaag
actatttcaaaaccttcaagtaactcaaaatatagtgtctttattattat
tattattattattattattattattattattattagcatatcccacaact
cataacatagcagtgggttgaatggctactactgaagatcactagttcag
atgacatgtcattttgaagtgaccttactcatctttgaatcatcattgtc
tagcccagtgtctattgtctagaagaataaatcaataaatttatgttgaa
ccaactgaagttctgttaaacataatgagtgtctctttcaccattcttac
ataatcaaaaacttcacagcaggaaaatgggacagttatgatgccaaata
ttttcatctcacattttaagctgttttagaactaatccagcataaaacac
aaggaagcggagactggctttcagtattcccaaggagcactgaatgcagt
attgttacttgtcagagagtcttggtagattactctctcagttgacgaag
gaggaggattctattcaaggactctagctttgaaaactggtaaggaacca
aagacattattcagtggtagagcacaggctttaggtttaattcctaacac
tacaaataataattgaataaacaaatttttagaaaagcagtaaagaaaaa
aaatgggagcatgttgagttaaaaatataaaccaaagaataaattgttaa
ctagtaattttgagaccatataatttgctggaaatataaagtaaaactac
aatgatccatttatctatatctcatttcatctatcatttcataatgaaag
gaaaacacataagaaaaactgactcttgatgagtatgttcagcccacgtt
gttttcctgctgaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88399928_88401121
seq2: B6Ng01-323H04.b_51_1253

seq1  GAATTCACGTGACCTTTTTCACCCTGAAAGTGAGATGAGAGCTTTGCGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGTGACCTTTTTCACCCTGAAAGTGAGATGAGAGCTTTGCGAT  50

seq1  TTAATTTCATCAAGCCGAAGGATACTTTGAGAAGTACCAGTTTTATCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCATCAAGCCGAAGGATACTTTGAGAAGTACCAGTTTTATCCTT  100

seq1  CATTCCTGTTTCATGAGCACTCCTTTTTCTCATTTTAAAAATTCCCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGTTTCATGAGCACTCCTTTTTCTCATTTTAAAAATTCCCATTT  150

seq1  TACTTTCCTCTTTGTTTAGGCGGACTCAGCTCAAAGGGCACTGAGTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCTCTTTGTTTAGGCGGACTCAGCTCAAAGGGCACTGAGTATCT  200

seq1  GTTGAGGGTGTTTCCTCACGGTGTTCCCGTCCACTTCTGCACAGGGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGGTGTTTCCTCACGGTGTTCCCGTCCACTTCTGCACAGGGAGCT  250

seq1  CTAGGATCCTCTTCTGTTTTCCTCTGCTCCCCTTTTGTCCCCTGGATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATCCTCTTCTGTTTTCCTCTGCTCCCCTTTTGTCCCCTGGATGCC  300

seq1  CCACAGTGGCCACGTCACAGTCTGGCCTGGCCTGTGTCGGCATCACCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGGCCACGTCACAGTCTGGCCTGGCCTGTGTCGGCATCACCTGG  350

seq1  AAGGGCTGGGCTGTACTCCTGCTTTCTGATTAAGCAGCACTGGCACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGGGCTGTACTCCTGCTTTCTGATTAAGCAGCACTGGCACAGAG  400

seq1  CCCTGGATTTGAAGTCTCTGTTTCTCGAGGAAGATGGTGGTTCCGGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATTTGAAGTCTCTGTTTCTCGAGGAAGATGGTGGTTCCGGTCTG  450

seq1  TGAATCACTTACTGACTGACGATTGTGCTGCTAATCCACAGTGACCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCACTTACTGACTGACGATTGTGCTGCTAATCCACAGTGACCTCTT  500

seq1  TGGAAGCTCAATCTGATGACCCTCTTGACTCAAGAGTTGCTATGTCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTCAATCTGATGACCCTCTTGACTCAAGAGTTGCTATGTCCTCC  550

seq1  TTGTATAATAAAGCCCACACCCTTCAGTCAGAGGTTTTTGTTTTGTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAATAAAGCCCACACCCTTCAGTCAGAGGTTTTTGTTTTGTTGTT  600

seq1  GTTGTTGTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA  650

seq1  ACTCACTCTGTAGACCAGGCTGGCCTTGAATTCAGAAATCCACCTGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGTAGACCAGGCTGGCCTTGAATTCAGAAATCCACCTGCCTC  700

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACCGCCTGGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACCGCCTGGCAAG  750

seq1  TCAGATTACTGTGCTGTCACTTTCTGTGTCACACTGGGAAATCCCATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTACTGTGCTGTCACTTTCTGTGTCACACTGGGAAATCCCATGAT  800

seq1  GCACTATGCATGCTACACACTCCTGTTTTCTCATTATTTTAAATGCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATGCATGCTACACACTCCTGTTTTCTCATTATTTTAAATGCCTCC  850

seq1  TCTTACATGGGCAGCCCAACAAATACCTTTGAAACAAATAGTTGCTCGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATGGGCAGCCCAACAAATACCTTTGAAACAAATAGTTGCTCGGC  900

seq1  TGTTAGAAGCTAGCAGCATGTACCTCATTTCCC-TTTCTTCTGTTTCTTT  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTTAGAAGCTAGCAGCATGTACCTCATTTCCCTTTTCTTCTGTTTCTTT  950

seq1  GGGTGGTTTTATCTTGTACTTACTGACACCTTTAGCAATTTACTTCACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTTTTATCTTGTACTTACTGACACCTTTAGCAATTTACTTCACAC  1000

seq1  ATGTAGGATGCACTGAGCTCTCTCTTCAGTGGTACACACGACTCTA-TTT  1048
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGTAGGATGCACTGAGCTCTCTCTTCAGTGGTACACACGACTCTATTTT  1050

seq1  CTGCACTGGGATGTTTTCTGTTAGCTCGTG--TTTTCCCTCCCAGCTCCA  1096
      |||||||||||||||||||||||||||| |  |||||||| |||||| | 
seq2  CTGCACTGGGATGTTTTCTGTTAGCTCGGGGTTTTTCCCTTCCAGCTTC-  1099

seq1  AGCTCCCAGAATAACAACTCCAAGACTT-ATATTTA-TTGACAAATGCCT  1144
      |||||||||||||||||| |  |||||| || |||| |||||||||||||
seq2  AGCTCCCAGAATAACAAC-CTCAGACTTAATTTTTATTTGACAAATGCCT  1148

seq1  AGGCCAAAGCTTTGCGT-ATTCTCCAACTAG--CTC--GTAATTT--AAC  1187
      ||||| |||| |||||| |||||||| ||||  |||  |||||||   ||
seq2  AGGCC-AAGC-TTGCGTAATTCTCCACCTAGACCTCGGGTAATTTTACAC  1196

seq1  ATTTTGT  1194
      |||||||
seq2  ATTTTGT  1203

seq1: chr10_88494769_88495946
seq2: B6Ng01-323H04.g_67_1233 (reverse)

seq1  GTTTTCAGCA-GAAAACAACGTGGGCTGAACATTAATTCTATCAAGAAGT  49
      |||||||||| ||||||||||||||||||||||  | || |||||||   
seq2  GTTTTCAGCAGGAAAACAACGTGGGCTGAACAT--ACTC-ATCAAGA--G  45

seq1  TCAGTTTTCTTTTAATGTGTTTT-CTTTCATTTATGAAATGATAGATGAA  98
      |||||||  || | ||||||||| |||||| ||||||||||||||||| |
seq2  TCAGTTT--TTCTTATGTGTTTTCCTTTCA-TTATGAAATGATAGATG-A  91

seq1  AATGAGATATTAGATAAATGGATCATTTGTAGTTTTACTTTATATTTTCC  148
      ||||||||| ||||||||||||||| |||||||||||||||||| |||||
seq2  AATGAGATA-TAGATAAATGGATCA-TTGTAGTTTTACTTTATA-TTTCC  138

seq1  AGCAAATTATATGGTCTCAAAATTTACTAGTTAACAATTTATTCTTTGGT  198
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCAAATTATATGGTCTCAAAA-TTACTAGTTAACAATTTATTCTTTGGT  187

seq1  TTATATTTTTAACTCAACATGCTCCCATTTTTTTTCTTTACTGCTTTTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTTAACTCAACATGCTCCCATTTTTTTTCTTTACTGCTTTTCT  237

seq1  AAAAATTTGTTTATTCAATTATTATTTGTAGTGTTAGGAATTAAACCTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTGTTTATTCAATTATTATTTGTAGTGTTAGGAATTAAACCTAA  287

seq1  AGCCTGTGCTCTACCACTGAATAATGTCTTTGGTTCCTTACCAGTTTTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGCTCTACCACTGAATAATGTCTTTGGTTCCTTACCAGTTTTCA  337

seq1  AAGCTAGAGTCCTTGAATAGAATCCTCCTCCTTCGTCAACTGAGAGAGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGAGTCCTTGAATAGAATCCTCCTCCTTCGTCAACTGAGAGAGTA  387

seq1  ATCTACCAAGACTCTCTGACAAGTAACAATACTGCATTCAGTGCTCCTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCAAGACTCTCTGACAAGTAACAATACTGCATTCAGTGCTCCTTG  437

seq1  GGAATACTGAAAGCCAGTCTCCGCTTCCTTGTGTTTTATGCTGGATTAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACTGAAAGCCAGTCTCCGCTTCCTTGTGTTTTATGCTGGATTAGT  487

seq1  TCTAAAACAGCTTAAAATGTGAGATGAAAATATTTGGCATCATAACTGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACAGCTTAAAATGTGAGATGAAAATATTTGGCATCATAACTGTC  537

seq1  CCATTTTCCTGCTGTGAAGTTTTTGATTATGTAAGAATGGTGAAAGAGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCCTGCTGTGAAGTTTTTGATTATGTAAGAATGGTGAAAGAGAC  587

seq1  ACTCATTATGTTTAACAGAACTTCAGTTGGTTCAACATAAATTTATTGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTATGTTTAACAGAACTTCAGTTGGTTCAACATAAATTTATTGAT  637

seq1  TTATTCTTCTAGACAATAGACACTGGGCTAGACAATGATGATTCAAAGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTCTAGACAATAGACACTGGGCTAGACAATGATGATTCAAAGAT  687

seq1  GAGTAAGGTCACTTCAAAATGACATGTCATCTGAACTAGTGATCTTCAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGTCACTTCAAAATGACATGTCATCTGAACTAGTGATCTTCAGT  737

seq1  AGTAGCCATTCAACCCACTGCTATGTTATGAGTTGTGGGATATGCTAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCATTCAACCCACTGCTATGTTATGAGTTGTGGGATATGCTAATA  787

seq1  ATAATAATAATAATAATAATAATAATAATAATAATAATAAAGACACTATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAATAATAATAATAATAATAATAATAATAAAGACACTATA  837

seq1  TTTTGAGTTACTTGAAGGTTTTGAAATAGTCTTTCCACAGTTTCACAGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTTACTTGAAGGTTTTGAAATAGTCTTTCCACAGTTTCACAGTG  887

seq1  ATTTACTTGCTAGTTAGTATGTTTATGAAACCACATGAACTGAAAAAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTGCTAGTTAGTATGTTTATGAAACCACATGAACTGAAAAAATA  937

seq1  TGATAGAAAGCTGTGTATTAGTACACTGAAGTTTGTCTTAACAAATCATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAAGCTGTGTATTAGTACACTGAAGTTTGTCTTAACAAATCATT  987

seq1  TTTAAGGAATTAATGCAAAAAATAATTTAGACAATAATTAAATATTCAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAATTAATGCAAAAAATAATTTAGACAATAATTAAATATTCAGG  1037

seq1  AGATCAATATCAACAGTGGTTCTCTTCAGATGGCAGATTTGCACAATGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAATATCAACAGTGGTTCTCTTCAGATGGCAGATTTGCACAATGTC  1087

seq1  TTTGGAAGTATCTCAGGACAATATAATGATGTGGTGTGACAAACAGTAAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGTATCTCAGGACAATATAATGATGTGGTGTGACAAACAGTAAC  1137

seq1  TACTAACAAAAAAAATAGTGATAGGAATTC  1178
      ||||||||||||||||||||||||||||||
seq2  TACTAACAAAAAAAATAGTGATAGGAATTC  1167