BAC Information

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BAC

Clone NameB6Ng01-323L09
Chromosome10 (Build37)
Map Location 93,742,321 - 93,743,384
singlet/doubletsinglet
Overlap genenone
Upstream geneElk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12
Downstream geneEG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323L09.bB6Ng01-323L09.g
ACCGA112221GA112222
length1,0651,206
definitionB6Ng01-323L09.b B6Ng01-323L09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagctacttcttcagcaccatgtctgcctgtgtgctgccatgc
ttcctgccatgaagataaagaactaaatctctgaaactggaagcaaggcc
ccaattaagtgcttttttttaaaaaaaagaatgatttatttattttatgc
atatgaatacactgtagctgtcctcaagtgcaccagaagaaggcatccga
tcccattacaaatggctgtgagccaccatatggttgctcagaattgaact
caggacctctgaaagagcagtcagtgttcttaagcattgagccatctctc
cagcccttgacaaatataaatttttctcttctcttcttgtctcatctcgt
ctcgtctcgtctcgtctcgtctcgtctcgtctcgtctcgtctcgtctctt
ctcttctcttctcttctctcttttcttctctctctctttctctctctctc
cctctctttctctctctctctctctcccttccctccttcctttcttctcc
ttctttctttcttcctttccttctttcaagtgttagatctattcctggag
attatgatttattagatgtgactgggggccagagatctgtgcttctaaaa
gccttccaggcagtccttactgacggagtaagaggtgagaaaaaatggag
gatttctgtttaactttttttattctggttttctgttgacatgctgttcc
atgaatgtgcaccacagccaccatcagaaaaggttatttataaaaatcac
aactggacttgttaggagtaagagtcttggatgacaatgatgactaacac
tgatcaagcgcttcccgagaacctgtgtttactgatgacgtcataacaat
ggctctgtgactctggcaccagtactcagccttctcactaacccacaagg
gcagtgggtctaactgacaactggagtgatgcattatgaacacgggatgt
ccctcaaggctccagcatcactcctgttccaataactagggtgaaaaaag
cattttctttggccaggacctgatgaggacacttcttctatcttcctatg
ctttgcctatcagcc
gaattcaccctgacctggagaagacaccactgcagggcctgtgggaaggt
cagaggggcagcggttgtccctgtcgtgatgtgtgtggctctgggctatg
cacagtgaggaaggacttccctcagaagttactgtagtacacaaaccagg
aagggcagtgctagtgaaggcagagatgtcgtctgatctgtgtttggagt
tggagtggggaatattgttagggactctcttcctctactctctgcccatg
atttactttgggttacgctttgggactttaagcttaagacacttggcctg
cattattggggttaacactacctggaatggtgagagatgtagtaagcatt
caccttccctccctccccacgaacgacaaacctgtagtaattcacgcctc
cagcccttccaaagacctccaccccttggaacctacaccgccccggtcaa
cccacgggaactttcacacaatcgactccaattaagatgattcctataca
catcatctctttacttgaccatatctgcttagtaggggtcttttacttcc
ttctctcctttttctgcagggacatcttggaaagaaaagaagagaaaata
ccctgacactgaatgctctcatgtgaaaaaggtcatgtcagtgttttgaa
agtgtgctatgtcagatgatttgcatcctatcgagacaaccaagagtggg
catgtatatgaagtggcatctgtggctttctaatgtcattatctaacgag
gatcatatcaaccttactgtaattcaaaccagtttttgcaagccatgtgt
gactctgtttttcctgtaactcttggcgctctgcagacactcgggcagct
gattctcacaacacagaatgtttctaggggcaaaccaaaaaatgtccatc
acaaaattttagggcatagggagttgatgaataccttagaaaaatgcctg
ggagttgcttatgttttgcctaagtctacttgatgttttgttgttgttgg
aaaggcaaagggcttgaatttaattaacatcacagaattgggtatagcaa
aaaatattccacttaattgtgaaagttattcatctagggcaagaagtttt
tactttacactcgttgctcattgaattttcttgaactctcatttgtgtga
cacctccttttcttatagcctaattgtggagttatttgtgcaacctttat
aacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93742321_93743384
seq2: B6Ng01-323L09.b_47_1111 (reverse)

seq1  GGCTGATAGG-AAAGCATAGGAAGATAGGAGGAAGTGTCC-CA-CAGGCC  47
      |||||||||| |||||||||||||||| || ||||||||| || |||| |
seq2  GGCTGATAGGCAAAGCATAGGAAGATA-GAAGAAGTGTCCTCATCAGGTC  49

seq1  CT-GCCAAAGGAAATGCCTTTTTCACCCTAGTTATTGGAACAGGAGTGAT  96
      || ||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  CTGGCCAAAGAAAATGCTTTTTTCACCCTAGTTATTGGAACAGGAGTGAT  99

seq1  GCTGGGGCCTTTGAGGGACATCCCCGTGTTCATAATGCATCACCCCAGTT  146
      ||||| ||| ||||||||||| ||||||||||||||||||||| ||||||
seq2  GCTGGAGCC-TTGAGGGACAT-CCCGTGTTCATAATGCATCACTCCAGTT  147

seq1  GTCAGTTAGACCCACTGCCCTTGTGGGTTAGTGAGAAGGCTGAGTACTGG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTAGACCCACTGCCCTTGTGGGTTAGTGAGAAGGCTGAGTACTGG  197

seq1  TGCCAGAGTCACAGAGCCATTGTTAAGACGTCATCAGTAAACACAGGTTC  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCCAGAGTCACAGAGCCATTGTTATGACGTCATCAGTAAACACAGGTTC  247

seq1  TCGGGAAGCGCTTGATCAGTGTTAGTCATCATTGTCATCCAAGACTCTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAAGCGCTTGATCAGTGTTAGTCATCATTGTCATCCAAGACTCTTA  297

seq1  CTCCTAACAAGTCCAGTTGTGATTTTTATAAATAACCTTTTCTGATGGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAACAAGTCCAGTTGTGATTTTTATAAATAACCTTTTCTGATGGTG  347

seq1  GCTGTGGTGCACATTCATGGAACAGCATGTCAACAGAAAACCAGAATAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTGCACATTCATGGAACAGCATGTCAACAGAAAACCAGAATAAA  397

seq1  AAAAGTTAAACAGAAATCCTCCATTTTTTCTCACCTCTTACTCCGTCAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAAACAGAAATCCTCCATTTTTTCTCACCTCTTACTCCGTCAGT  447

seq1  AAGGACTGCCTGGAAGGCTTTTAGAAGCACAGATCTCTGGCCCCCAGTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGCCTGGAAGGCTTTTAGAAGCACAGATCTCTGGCCCCCAGTCA  497

seq1  CATCTAATAAATCATAATCTCCAGGAATAGATCTAACACTTGAAAGAAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATAAATCATAATCTCCAGGAATAGATCTAACACTTGAAAGAAGG  547

seq1  AAAGGAAGAAAGAAAGAAGGAGAAGAAAGGAAGGAGGGAAGGGAGAGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGAAAGAAAGAAGGAGAAGAAAGGAAGGAGGGAAGGGAGAGAGA  597

seq1  GAGAGAGAGAAAGAGAGGGAGAGAGAGAGAAAGAGAGAGAGAAGAAAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAAAGAGAGGGAGAGAGAGAGAAAGAGAGAGAGAAGAAAAGA  647

seq1  GAGAAGAGAAGAGAAGAGAAGAGACGAGACGAGACGAGACGAGACGAGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGAAGAGAAGAGAAGAGACGAGACGAGACGAGACGAGACGAGAC  697

seq1  GAGACGAGACGAGACGAGACGAGATGAGACAAGAAGAGAAGAGAAAAATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGAGACGAGACGAGACGAGATGAGACAAGAAGAGAAGAGAAAAATT  747

seq1  TATATTTGTCAAGGGCTGGAGAGATGGCTCAATGCTTAAGAACACTGACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGTCAAGGGCTGGAGAGATGGCTCAATGCTTAAGAACACTGACT  797

seq1  GCTCTTTCAGAGGTCCTGAGTTCAATTCTGAGCAACCATATGGTGGCTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCAGAGGTCCTGAGTTCAATTCTGAGCAACCATATGGTGGCTCA  847

seq1  CAGCCATTTGTAATGGGATCGGATGCCTTCTTCTGGTGCACTTGAGGACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTTGTAATGGGATCGGATGCCTTCTTCTGGTGCACTTGAGGACA  897

seq1  GCTACAGTGTATTCATATGCATAAAATAAATAAATCATTCTTTTTTTTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTGTATTCATATGCATAAAATAAATAAATCATTCTTTTTTTTAA  947

seq1  AAAAAAGCACTTAATTGGGGCCTTGCTTCCAGTTTCAGAGATTTAGTTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCACTTAATTGGGGCCTTGCTTCCAGTTTCAGAGATTTAGTTCT  997

seq1  TTATCTTCATGGCAGGAAGCATGGCAGCACACAGGCAGACATGGTGCTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCATGGCAGGAAGCATGGCAGCACACAGGCAGACATGGTGCTGA  1047

seq1  AGAAGTAGCTGAGAATTC  1064
      ||||||||||||||||||
seq2  AGAAGTAGCTGAGAATTC  1065