BAC Information

Click to search

BAC

Clone NameB6Ng01-323O08
Chromosome10 (Build37)
Map Location 93,566,144 - 93,714,868
singlet/doubletdoublet
Overlap geneFgd6, Nr2c1, Ndufa12
Upstream geneEG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt
Downstream geneEG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323O08.bB6Ng01-323O08.g
ACCGA112351GA112352
length1,1301,145
definitionB6Ng01-323O08.b B6Ng01-323O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,566,144 - 93,567,268)(93,713,705 - 93,714,868)
sequence
gtatttgctatcgtataattttcaacttttttcttttttctttctttttt
tttttttatgccttagtcttttatggtcattgaaaacaaaacgtttgagt
aaaaaggtaaaatataatctccttcgccaggcagtggtggcacacgcacg
cttttactctgagcagttgggaggcagaggcaggcagatctctgtgttag
acgctagccttgtctacagagtgaattccaggacagagaaactctatctc
aaacaaacaaacgaacaaacaaataggtaaataaatgaatgaacgaatga
atgataataataataatctcttcaaaatcttagggattaattgatccaat
aaaccagttaaaattcaagtagtccaagattcagttctgaagatctatta
ttgcatattgtactgtttaaattgggtaaacaatattttggttagaggta
gttagctagttagtttgtttaaaacaaggtttcactgtataaccacagtg
gcctggaaatcctggctttcagctcccatcagccagctgtggtagcccag
gcctgtgctcccaggacatgagaagccgaggcagaaagaaggaatttagc
tcctcctgaggaacatattgaattcctgtcagcatggataacacaaaccc
ctgtctcagaaaccaaaagagggctaacaagctagctcggagcatgaagg
cgcttgctgccacgtctgggatcccacgtgtggaaggagagaactgactc
ttgaaagctgtcccctgacctcagcacgcatgctggggcacatgtgcacc
aaacacctacacacatgtgcgcacacacatactaagtaaactaaggagtc
aacagataatcttagctctttaagccctgtggtaaaaatcatacatactt
accatcttagcccactctgtcgagtggaatatgtggacaggattgtgcaa
ctatctttctaaaaccccgccacggtcctcgccaaattgacatttccatg
gccattaaaagattagctgtccttcctcttccaccctgactggccacccc
cgactctgcctcctgcctgatgccacttgatacgacgatccttccctatt
cccaactaaacatttcttccaattgtccga
gaattctacattttcatctgaaggctgctggcagaagactggcttccagg
cagctaggatgagggtcttaagcccatgcccacagtggcacacccactcc
aataaggccacacctattccaacagggccacacctcctaatagtgccact
ccttgagccaagcatatacaaaccatcagagtgggtgtcacagtcaccca
tggggattcgctgtccctctttaaacctgttcctcatggattcggatgga
aatctgtaatatttttccatagcttgaggaaaacaacagagatatgagtt
catattgcttgatagcatagacttgtcatctcagttcctgggaggctgag
gtgggaggaacttgagttcaaggccaacctgggctacatggtgaaagcct
gtctcagagaaacaggggctttgttttcagcaggcaaaggttcttactgc
ctcaccctgatgctctgagttgatgcccagagctcatgtaagggagacag
gaaaggacccactccagagagctgtcatctgacctgcacacgtgtgatgg
cagtagcacatatatgcacaccactaataaaaaaaactcaagtcaggaga
aaatattaaaagactggaaggaaataaactgcgttaaaccacattgcgtg
atttttcctcacagaagggtgatttgtttaatcctggaagtcagtatggg
gagacattagaaaagagcgctaggaatcgctgcataaaataaaagaactt
ccagtggtcaagaccaacattgcacagacagtactgaatggtaaacggag
agttagggaggaacaatcccgcaagtgggaggagacaagaattcctcaac
agatgcggaactgcgactcggtgactaactgcgtttgctgtacaagcttg
agagcctgacttctagtcccaccccccaggtaaagactagtacgcgacag
ctggacactggcagagacggatatagctggggatgtgccgccagcttaga
gcaaagagtagctagtgtagagcaggccagagcatccccctctgcctcca
cgtgcacaggcacaggtgcacacacctgcacacagaatgcagcatgcagc
accatgaggggtgctttttacaaagatctcaacagatcggtggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93566144_93567268
seq2: B6Ng01-323O08.b_59_1188

seq1  GTATTTGCTATCGTATAATTTTCAACTTTTTTCTTTTTTCTTTCTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCTATCGTATAATTTTCAACTTTTTTCTTTTTTCTTTCTTTTTT  50

seq1  TTTTTTTATGCCTTAGTCTTTTATGGTCATTGAAAACAAAACGTTTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATGCCTTAGTCTTTTATGGTCATTGAAAACAAAACGTTTGAGT  100

seq1  AAAAAGGTAAAATATAATCTCCTTCGCCAGGCAGTGGTGGCACACGCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTAAAATATAATCTCCTTCGCCAGGCAGTGGTGGCACACGCACG  150

seq1  CTTTTACTCTGAGCAGTTGGGAGGCAGAGGCAGGCAGATCTCTGTGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTCTGAGCAGTTGGGAGGCAGAGGCAGGCAGATCTCTGTGTTAG  200

seq1  ACGCTAGCCTTGTCTACAGAGTGAATTCCAGGACAGAGAAACTCTATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTAGCCTTGTCTACAGAGTGAATTCCAGGACAGAGAAACTCTATCTC  250

seq1  AAACAAACAAACGAACAAACAAATAGGTAAATAAATGAATGAACGAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACGAACAAACAAATAGGTAAATAAATGAATGAACGAATGA  300

seq1  ATGATAATAATAATAATCTCTTCAAAATCTTAGGGATTAATTGATCCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATAATAATAATCTCTTCAAAATCTTAGGGATTAATTGATCCAAT  350

seq1  AAACCAGTTAAAATTCAAGTAGTCCAAGATTCAGTTCTGAAGATCTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTTAAAATTCAAGTAGTCCAAGATTCAGTTCTGAAGATCTATTA  400

seq1  TTGCATATTGTACTGTTTAAATTGGGTAAACAATATTTTGGTTAGAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATTGTACTGTTTAAATTGGGTAAACAATATTTTGGTTAGAGGTA  450

seq1  GTTAGCTAGTTAGTTTGTTTAAAACAAGGTTTCACTGTATAACCACAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTAGTTAGTTTGTTTAAAACAAGGTTTCACTGTATAACCACAGTG  500

seq1  GCCTGGAAATCCTGGCTTTCAGCTCCCATCAGCCAGCTGTGGTAGCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAAATCCTGGCTTTCAGCTCCCATCAGCCAGCTGTGGTAGCCCAG  550

seq1  GCCTGTGCTCCCAGGACATGAGAAGCCGAGGCAGAAAGAAGGAATTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCTCCCAGGACATGAGAAGCCGAGGCAGAAAGAAGGAATTTAGC  600

seq1  TCCTCCTGAGGAACATATTGAATTCCTGTCAGCATGGATAACACAAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGAGGAACATATTGAATTCCTGTCAGCATGGATAACACAAACCC  650

seq1  CTGTCTCAGAAACCAAAAGAGGGCTAACAAGCTAGCTCGGAGCATGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAGAAACCAAAAGAGGGCTAACAAGCTAGCTCGGAGCATGAAGG  700

seq1  CGCTTGCTGCCACGTCTGGGATCCCACGTGTGGAAGGAGAGAACTGACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGCTGCCACGTCTGGGATCCCACGTGTGGAAGGAGAGAACTGACTC  750

seq1  TTGAAAGCTGTCCCCTGACCTCAGCACGCATGCTGGGGCACATGTGCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCTGTCCCCTGACCTCAGCACGCATGCTGGGGCACATGTGCACC  800

seq1  AAACACCTACACACATGTGCGCACACACATACTAAGTAAACTAAGGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTACACACATGTGCGCACACACATACTAAGTAAACTAAGGAGTC  850

seq1  AACAGATAATCTTAGCTCTTTAAG-CCTGTGGTAAAAATCATACATACTT  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AACAGATAATCTTAGCTCTTTAAGCCCTGTGGTAAAAATCATACATACTT  900

seq1  ACCATCTTAG-CCACTCTGTCGAGTGGAATATGTGGACAGGATTGTGCAA  948
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTAGCCCACTCTGTCGAGTGGAATATGTGGACAGGATTGTGCAA  950

seq1  CTATCTTTCTAAAACCC--GCACGGT-CTCGCAAAATTGACA-TTCCATG  994
      |||||||||||||||||   |||||| ||||| ||||||||| |||||||
seq2  CTATCTTTCTAAAACCCCGCCACGGTCCTCGCCAAATTGACATTTCCATG  1000

seq1  GCCATT-AAAGATTAGCTTGTCCTT-CTCTTCCACCCTGACTGGCCA-CC  1041
      |||||| |||||||||| ||||||| ||||||||||||||||||||| ||
seq2  GCCATTAAAAGATTAGC-TGTCCTTCCTCTTCCACCCTGACTGGCCACCC  1049

seq1  CCGACTCTGCCTCCTGCCTTGATG-CACTTGAATACGAAGGATCCTTTCC  1090
      |||||||||||||||||| ||||| |||||| ||||| | ||||||| ||
seq2  CCGACTCTGCCTCCTGCC-TGATGCCACTTG-ATACG-ACGATCCTTCCC  1096

seq1  TATTTCCAAACTAACATTTTCTTCCATTTGTCCGA  1125
      || |||| ||||||   ||||||||| ||||||||
seq2  TA-TTCCCAACTAAACATTTCTTCCAATTGTCCGA  1130

seq1: chr10_93713705_93714868
seq2: B6Ng01-323O08.g_67_1211 (reverse)

seq1  AGCCACCCGGGTCTGTTGAGGATCTTTGT-AAAAGCACCCCCTTCATGTG  49
      |||||||  | |||||||| ||||||||| |||||||||||  ||||| |
seq2  AGCCACC--GATCTGTTGA-GATCTTTGTAAAAAGCACCCC--TCATG-G  44

seq1  TGCTGCATGCTGCA-TCTGTGTGCAGGTGTGTGCACCTGTGCCTGTGCAC  98
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCTGCATGCTGCATTCTGTGTGCAGGTGTGTGCACCTGTGCCTGTGCAC  94

seq1  GTGGAGGCCAGAGGGGGATGCTCTGGCCCTGCTCTAACACCTAGCCTTAC  148
      ||||||| |||||||||||||||||| |||||||| ||| |||||  |||
seq2  GTGGAGG-CAGAGGGGGATGCTCTGG-CCTGCTCT-ACA-CTAGC--TAC  138

seq1  TCCTTTGCTCTAAGCTGGCGGCCACCAATCCCCAGCTATATCCCGTCTCT  198
      | ||||||||||||||||||| |||  |||||||||||||| ||||||||
seq2  T-CTTTGCTCTAAGCTGGCGG-CAC--ATCCCCAGCTATAT-CCGTCTCT  183

seq1  GCCAGTGTTCCAGCTGTCGCCGTACCTAGTCTTTTACCTGGGGGGTGGGA  248
      ||||||| ||||||||||| |||| |||||| ||||||||||||||||||
seq2  GCCAGTG-TCCAGCTGTCG-CGTA-CTAGTC-TTTACCTGGGGGGTGGGA  229

seq1  CTAGAAGTCAGGCTCTCAAGCTTGTACAGCAAACGCAGTTAGTCACCGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGTCAGGCTCTCAAGCTTGTACAGCAAACGCAGTTAGTCACCGAG  279

seq1  TCGCAGTTCCGCATCTGTTGAGGAATTCTTGTCTCCTCCCACTTGCGGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGTTCCGCATCTGTTGAGGAATTCTTGTCTCCTCCCACTTGCGGGA  329

seq1  TTGTTCCTCCCTAACTCTCCGTTTACCATTCAGTACTGTCTGTGCAATGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTCCCTAACTCTCCGTTTACCATTCAGTACTGTCTGTGCAATGT  379

seq1  TGGTCTTGACCACTGGAAGTTCTTTTATTTTATGCAGCGATTCCTAGCGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGACCACTGGAAGTTCTTTTATTTTATGCAGCGATTCCTAGCGC  429

seq1  TCTTTTCTAATGTCTCCCCATACTGACTTCCAGGATTAAACAAATCACCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTAATGTCTCCCCATACTGACTTCCAGGATTAAACAAATCACCC  479

seq1  TTCTGTGAGGAAAAATCACGCAATGTGGTTTAACGCAGTTTATTTCCTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGGAAAAATCACGCAATGTGGTTTAACGCAGTTTATTTCCTTC  529

seq1  CAGTCTTTTAATATTTTCTCCTGACTTGAGTTTTTTTTATTAGTGGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTTAATATTTTCTCCTGACTTGAGTTTTTTTTATTAGTGGTGTG  579

seq1  CATATATGTGCTACTGCCATCACACGTGTGCAGGTCAGATGACAGCTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGTGCTACTGCCATCACACGTGTGCAGGTCAGATGACAGCTCTC  629

seq1  TGGAGTGGGTCCTTTCCTGTCTCCCTTACATGAGCTCTGGGCATCAACTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGGGTCCTTTCCTGTCTCCCTTACATGAGCTCTGGGCATCAACTC  679

seq1  AGAGCATCAGGGTGAGGCAGTAAGAACCTTTGCCTGCTGAAAACAAAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCAGGGTGAGGCAGTAAGAACCTTTGCCTGCTGAAAACAAAGCC  729

seq1  CCTGTTTCTCTGAGACAGGCTTTCACCATGTAGCCCAGGTTGGCCTTGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTCTGAGACAGGCTTTCACCATGTAGCCCAGGTTGGCCTTGAA  779

seq1  CTCAAGTTCCTCCCACCTCAGCCTCCCAGGAACTGAGATGACAAGTCTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTTCCTCCCACCTCAGCCTCCCAGGAACTGAGATGACAAGTCTAT  829

seq1  GCTATCAAGCAATATGAACTCATATCTCTGTTGTTTTCCTCAAGCTATGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAAGCAATATGAACTCATATCTCTGTTGTTTTCCTCAAGCTATGG  879

seq1  AAAAATATTACAGATTTCCATCCGAATCCATGAGGAACAGGTTTAAAGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTACAGATTTCCATCCGAATCCATGAGGAACAGGTTTAAAGAG  929

seq1  GGACAGCGAATCCCCATGGGTGACTGTGACACCCACTCTGATGGTTTGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCGAATCCCCATGGGTGACTGTGACACCCACTCTGATGGTTTGTA  979

seq1  TATGCTTGGCTCAAGGAGTGGCACTATTAGGAGGTGTGGCCCTGTTGGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGGCTCAAGGAGTGGCACTATTAGGAGGTGTGGCCCTGTTGGAA  1029

seq1  TAGGTGTGGCCTTATTGGAGTGGGTGTGCCACTGTGGGCATGGGCTTAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGGCCTTATTGGAGTGGGTGTGCCACTGTGGGCATGGGCTTAAG  1079

seq1  ACCCTCATCCTAGCTGCCTGGAAGCCAGTCTTCTGCCAGCAGCCTTCAGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCATCCTAGCTGCCTGGAAGCCAGTCTTCTGCCAGCAGCCTTCAGA  1129

seq1  TGAAAATGTAGAATTC  1164
      ||||||||||||||||
seq2  TGAAAATGTAGAATTC  1145