BAC Information

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BAC

Clone NameB6Ng01-323O14
Chromosome10 (Build37)
Map Location 63,984,172 - 64,078,042
singlet/doubletdoublet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323O14.bB6Ng01-323O14.g
ACCGA112363GA112364
length1,2101,113
definitionB6Ng01-323O14.b B6Ng01-323O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,984,172 - 63,985,092)(64,076,915 - 64,078,042)
sequence
gaattctctatacacaatgatctatgtggataatgcccttgcaatcaatt
tcctgctgtaagatgttaaaggcagacctcctgttctagcactagcctgg
ggagttttggaatctgcactgtaccttatccaccaataactcaaccaaat
tcaacccgcttgcaccactggaagcctcacctggctgcaaaagatggcga
gttcaggtttcatatcctccattacaggaggtatcacaagtgtcacattc
aagatttcaggatgaactactacactacatttcttcactacttcccaaag
ctcccccaatttcagctgtctctctctacactctccttccaccaccaccc
caccacctaacccttcatactcccatctccagctaccctcagtccacctg
aaaatttatcctactttcccttcccagaaaggtccttgttttcccttaga
gcccttatctttgtcttactgctgggactatagactatagcttgattacc
atttacttaataggaaatatacaattataaatcgatatataccatatttg
tctttgtaggtctgggttacctcacctgggataatttttttcaagttcca
ccaatttgcctacaaatttcatgatgtcatatttttaacagctgagtaat
actccattgtttggatgtcccatattttctttatccattcttcagttgtt
tccaggttctgaataaagtgtagtgaacacagttgtagctctatgtgttt
tgggggaacagggagatgaaagggagtagaagagaaaaaagaaaagagaa
cagttttgtgtataaatgcttgctcatatgtataaaaatatgaaatgaag
ggccattatgaagagaaataaatagcattaacatttttgaccatttatac
ctccatcctccccattagaaggcccttcttccatcacatctggtttacag
tctagaaacatgcagaaacacctttgcttatgcttttcccctataatatt
cagttttaaatattatttttcttgccaaaggagtatttttgtaaggtaca
tgactacccttatgagttgtctggtgggagggcactagcattggcctttg
gtgattcctcatattgcaacaaaggtggaattagtagtttgagcagcact
tggaattggcaaccattgactagctccaatgtgtgtgaatcaggtctctt
ttgagctcat

gaattcacagatatttggtgacttgcatattattaatttcagttttatga
gaatttagcccacaattttgcagtctatgagacaatcacttttgtaatag
ccatttttgtataagtaccacaaaggagatactctgtgtcaaaatggtaa
agaactgttacttaggaaagtttgggagagaaaaagagaaagagagagag
agagagagagagagagagagagagagagagcatgagcgagggagagagtg
catttgtttgaggttttaagaggtagaatttcaataaacaataatgaaaa
catgaacagagagaatagttcactatgctcagtaggtgactcggtctgaa
aggaaccagatcaatgacttagattcatatatgccccatgcatctctgtt
cattttcttgaggaattttaggggccctcctccctcctgtatttaattgc
catagacgtttctaacagggaacctcttcagaacacggagaatgtggatg
aagaacaacaacggtggtgacagttttgctgaattactcaccaaactgac
agtgctctgactgaaccaaacagcagcagcatatgacagaaacacccatg
gaagggatctgacaaagggtggaaaggaaggaggaagccaggcagtaaac
aatgctgggctgagatgtgtccttgaagtctttcaaggtcatgcagtcca
acagcattgcatactgtgggcagtgagtgaccatatagtgagctgctgtt
gaatatagccaagacttctttcgtgaagtctccctcactgacgtagaatg
tagtttctagtggttctgttgagttttcttagctaagaatagaggtgaaa
tgtcaagggagcaggaggccaaataataaacttagactaggatccgtgct
ttaatgttaaaaaaaaaaaaaaaaatgacaccgaaaacatacctggaagg
actgtcatcatagctgctgaaatcatttaaggatgaagaagccataaaat
atataattctgtttctagtggttgtctttggaagaggaagaatgtgagta
aggaggacttctgagtcacagggacgagaatctccagactggagaagtct
ctttgcagttgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_63984172_63985092
seq2: B6Ng01-323O14.b_315_1258

seq1  CTACTACACTACATTTCTTCACTACTTCCCAAAGCTCCCCCAATTTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACACTACATTTCTTCACTACTTCCCAAAGCTCCCCCAATTTCAGC  50

seq1  TGTCTCTCTCTACACTCTCCTTCCACCACCACCCCACCACCTAACCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCTACACTCTCCTTCCACCACCACCCCACCACCTAACCCTTC  100

seq1  ATACTCCCATCTCCAGCTACCCTCAGTCCACCTGAAAATTTATCCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCCATCTCCAGCTACCCTCAGTCCACCTGAAAATTTATCCTACTT  150

seq1  TCCCTTCCCAGAAAGGTCCTTGTTTTCCCTTAGAGCCCTTATCTTTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCCAGAAAGGTCCTTGTTTTCCCTTAGAGCCCTTATCTTTGTCT  200

seq1  TACTGCTGGGACTATAGACTATAGCTTGATTACCATTTACTTAATAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGGGACTATAGACTATAGCTTGATTACCATTTACTTAATAGGAA  250

seq1  ATATACAATTATAAATCGATATATACCATATTTGTCTTTGTAGGTCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAATTATAAATCGATATATACCATATTTGTCTTTGTAGGTCTGGG  300

seq1  TTACCTCACCTGGGATAATTTTTTTCAAGTTCCACCAATTTGCCTACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCACCTGGGATAATTTTTTTCAAGTTCCACCAATTTGCCTACAAA  350

seq1  TTTCATGATGTCATATTTTTAACAGCTGAGTAATACTCCATTGTTTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATGTCATATTTTTAACAGCTGAGTAATACTCCATTGTTTGGAT  400

seq1  GTCCCATATTTTCTTTATCCATTCTTCAGTTGTTTCCAGGTTCTGAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATATTTTCTTTATCCATTCTTCAGTTGTTTCCAGGTTCTGAATAA  450

seq1  AGTGTAGTGAACACAGTTGTAGCTCTATGTGTTTT-GGGGAACAGGGAGA  499
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTGTAGTGAACACAGTTGTAGCTCTATGTGTTTTGGGGGAACAGGGAGA  500

seq1  TGAAAGGGAGTAGAAGAGAAAAAAGAAAAGAGAACAGTTTTGTGTATAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGAGTAGAAGAGAAAAAAGAAAAGAGAACAGTTTTGTGTATAAA  550

seq1  TGCTTGCTCATATGTATAAAAATATGAAATGAA-GGCCATTATGAAGAGA  598
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCTTGCTCATATGTATAAAAATATGAAATGAAGGGCCATTATGAAGAGA  600

seq1  AATAAATAGCA-TAACATTTTTGACCATTTATACCTCCATCCTCCCCATT  647
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAGCATTAACATTTTTGACCATTTATACCTCCATCCTCCCCATT  650

seq1  AGAAGGCCC-TCTTCCATCACATCT-GTTTACAGTCTAGAAACATGCAG-  694
      ||||||||| ||||||||||||||| ||||||||||||||||||||||| 
seq2  AGAAGGCCCTTCTTCCATCACATCTGGTTTACAGTCTAGAAACATGCAGA  700

seq1  AACACCTTTGC-TATGCTTTCCCCCTAT-ATA-TCAGTTTTAAATAT--A  739
      ||||||||||| |||||||| ||||||| ||| ||||||||||||||   
seq2  AACACCTTTGCTTATGCTTTTCCCCTATAATATTCAGTTTTAAATATTAT  750

seq1  TTTTCTTGC--AAAGAGTA-TTTTGTAAAGTACATGACTA-CCTTATGAG  785
      |||||||||  || ||||| |||||||| ||||||||||| |||||||||
seq2  TTTTCTTGCCAAAGGAGTATTTTTGTAAGGTACATGACTACCCTTATGAG  800

seq1  TTGTCT-GTGGGA-GGCACTAGCATT-GCCTTT-GTGATTTCTCATTATG  831
      |||||| |||||| |||||||||||| |||||| |||||| |||||  ||
seq2  TTGTCTGGTGGGAGGGCACTAGCATTGGCCTTTGGTGATTCCTCATATTG  850

seq1  C-ACAAAGTTGG-ATTAGTAGTTTTGAGCAGAACTTGGATTTTGCCAAAC  879
      | |||||| ||| |||||||| ||||||||| ||||||| || ||  |||
seq2  CAACAAAGGTGGAATTAGTAG-TTTGAGCAGCACTTGGAATTGGC--AAC  897

seq1  CATTGAGTAGCCTCCAATGTGTG---ATCA-GTCTCTTT--GGCTCAT  921
      |||||| ||| ||||||||||||   |||| ||||||||   ||||||
seq2  CATTGACTAG-CTCCAATGTGTGTGAATCAGGTCTCTTTTGAGCTCAT  944


seq1: chr10_64076915_64078042
seq2: B6Ng01-323O14.g_67_1179 (reverse)

seq1  GGCAACTTGCAAAGGAGAATTTTCTTCAGTCTTGGAGATTTCCTCTGTCC  50
      |||||| |||||| ||||   |||| ||||| ||||||||  ||| ||||
seq2  GGCAAC-TGCAAA-GAGA--CTTCTCCAGTC-TGGAGATT--CTC-GTCC  42

seq1  CTTGTGACCTCAG-AGTCCTCCTACTTCACCATTCTCTCTCTTCCCAAGA  99
      | ||||| ||||| |||||||||   ||| ||||||  ||||||| ||||
seq2  C-TGTGA-CTCAGAAGTCCTCCTTACTCA-CATTCTTCCTCTTCCAAAGA  89

seq1  CAACCACTAAGAAACAGAATTATATTATTTTTATTGCTTCTTCATTCTTT  149
      |||||||| ||||||||||||||||   |||||| ||||||||| || ||
seq2  CAACCACT-AGAAACAGAATTATAT--ATTTTATGGCTTCTTCA-TCCTT  135

seq1  AAATGATTTCAGCAGCTATGATGACAGTCCTTCCAGGTATGTTTTCGGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTTCAGCAGCTATGATGACAGTCCTTCCAGGTATGTTTTCGGTG  185

seq1  TTCATTTTTTTTTTTTTTTTAACATTTAAAGCACGGATCCTAGTCTAAGT  249
      |   |||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCATTTTTTTTTTTTTTTTTAACA-TTAAAGCACGGATCCTAGTCTAAGT  234

seq1  TTATTATTTGGCCTCCTGCTCCCTTGACATTTCACCTCTATTCTTAGCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTGGCCTCCTGCTCCCTTGACATTTCACCTCTATTCTTAGCTA  284

seq1  AGAAAACTCAACAGAACCACTAGAAACTACATTCTACGTCAGTGAGGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTCAACAGAACCACTAGAAACTACATTCTACGTCAGTGAGGGAG  334

seq1  ACTTCACGAAAGAAGTCTTGGCTATATTCAACAGCAGCTCACTATATGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACGAAAGAAGTCTTGGCTATATTCAACAGCAGCTCACTATATGGT  384

seq1  CACTCACTGCCCACAGTATGCAATGCTGTTGGACTGCATGACCTTGAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTGCCCACAGTATGCAATGCTGTTGGACTGCATGACCTTGAAAG  434

seq1  ACTTCAAGGACACATCTCAGCCCAGCATTGTTTACTGCCTGGCTTCCTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGGACACATCTCAGCCCAGCATTGTTTACTGCCTGGCTTCCTCC  484

seq1  TTCCTTTCCACCCTTTGTCAGATCCCTTCCATGGGTGTTTCTGTCATATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCCACCCTTTGTCAGATCCCTTCCATGGGTGTTTCTGTCATATG  534

seq1  CTGCTGCTGTTTGGTTCAGTCAGAGCACTGTCAGTTTGGTGAGTAATTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGTTTGGTTCAGTCAGAGCACTGTCAGTTTGGTGAGTAATTCA  584

seq1  GCAAAACTGTCACCACCGTTGTTGTTCTTCATCCACATTCTCCGTGTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTGTCACCACCGTTGTTGTTCTTCATCCACATTCTCCGTGTTCT  634

seq1  GAAGAGGTTCCCTGTTAGAAACGTCTATGGCAATTAAATACAGGAGGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTTCCCTGTTAGAAACGTCTATGGCAATTAAATACAGGAGGGAG  684

seq1  GAGGGCCCCTAAAATTCCTCAAGAAAATGAACAGAGATGCATGGGGCATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCCCTAAAATTCCTCAAGAAAATGAACAGAGATGCATGGGGCATA  734

seq1  TATGAATCTAAGTCATTGATCTGGTTCCTTTCAGACCGAGTCACCTACTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCTAAGTCATTGATCTGGTTCCTTTCAGACCGAGTCACCTACTG  784

seq1  AGCATAGTGAACTATTCTCTCTGTTCATGTTTTCATTATTGTTTATTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTGAACTATTCTCTCTGTTCATGTTTTCATTATTGTTTATTGAA  834

seq1  ATTCTACCTCTTAAAACCTCAAACAAATGCACTCTCTCCCTCGCTCATGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCTCTTAAAACCTCAAACAAATGCACTCTCTCCCTCGCTCATGC  884

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTTTC  934

seq1  TCTCCCAAACTTTCCTAAGTAACAGTTCTTTACCATTTTGACACAGAGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAACTTTCCTAAGTAACAGTTCTTTACCATTTTGACACAGAGTA  984

seq1  TCTCCTTTGTGGTACTTATACAAAAATGGCTATTACAAAAGTGATTGTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTGTGGTACTTATACAAAAATGGCTATTACAAAAGTGATTGTCT  1034

seq1  CATAGACTGCAAAATTGTGGGCTAAATTCTCATAAAACTGAAATTAATAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACTGCAAAATTGTGGGCTAAATTCTCATAAAACTGAAATTAATAA  1084

seq1  TATGCAAGTCACCAAATATCTGTGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  TATGCAAGTCACCAAATATCTGTGAATTC  1113


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