BAC Information

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BAC

Clone NameB6Ng01-324O18
Chromosome10 (Build37)
Map Location 48,383,252 - 48,512,397
singlet/doubletdoublet
Overlap geneLOC546562
Upstream geneLOC100041663, LOC100042398
Downstream geneLOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324O18.bB6Ng01-324O18.g
ACCGA113110GA113111
length1,1431,001
definitionB6Ng01-324O18.b B6Ng01-324O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,511,246 - 48,512,397)(48,383,252 - 48,384,016)
sequence
gaattctcaactcttcctgcagcaggccttcctggatgctgccatgcaag
tgctttgatgataatggacttaatctctctgaacatgtaaaccagcccca
ggtaaatgtcatctttacaagaggtacctttattatggtgtcttttcaca
gtagtataatcctaactaaggtaaggttcacgcagaaaattattaagaga
taaccttgcttaacaacctgtaggcatgacaagtttacacatatggtaac
attaaaataaacaagatatgagctatacaaataattaagaatggaactta
attattacactaataaagtgtcttagctggggaaacttcatgtaagactc
aggtattcattgatatttttcaaaagaaatttaatgtgacatatgtgact
tcaaatggaggaatagttatttcctcatagttcaaagaattcaatttgtg
attgcttggcctagggtaagcctggacactcgagcagaagctggaggtgg
tacagagtgcctcacctgtgagcagttgaagcagagagaggccaaggaca
agattcttttcaatgacatataattggtgaacacttcctacatcttggac
taaccttccaatcttttccagaaccattcgacatcatggcattagctctt
catcttgaaatcctggttacattcatagcaaactgcaggcatccaaagga
ttggaggcaatttgaataggaacttagaacatagcatttgctttccttta
cacctctattcaataaagtgtatgcagaccatgtacaagtatttaaataa
aactcatgattatacaaattatcttctctaatctttcctcttttgctcat
tttcttatttaatgttcttactttttatgattttggggaaattttttgca
tttatttcaaactctattcagtttgctcaaaattcaagattatgtacgtg
aaaaagaactctgtgaaatatgtttaaacacatgcatgtataagtgatat
tcacttttttatcattcattcttttataaaatatatagataacataattt
attatgataaaacctccacagattatatgttttacatttttaatgattaa
ctaatccagatactacttgttttttcttggttggaaatattga

gaattcagctggaacaaaggatgggcctttgggttttccccctatatatt
tagagttaaaaactgaacattaagccttgatcagagacctttgtcttggc
ttcattcctttctactttatcctgttccatccctatctctcctttcaggt
acccagtttgatcaaagccactggacagcaacaggtgactcctcctcctt
ttcctctcaacttctccttttgcctccaaggtttctttgctgtataagta
aaaatactattcctaaaatatgtgttgaataaactacatttttcttagtg
tacattttgacacttatcaaaatgtaggtagttgtagatttgagaattta
tttctgagtcacatgttctattccattctctacgtgtatgctttgtagct
gcactattgaatatttacatttatagctgtatagtacaatttgaaatcaa
ctattaggatgcagccagcattgttcttgttacaaaatttttgctattct
ggatcattttgtttttagaatgttttctagtttagtggggaaggcaatga
gaatggtagcgggaaaagttctaaatctgtagattgctttagctgatgta
accattttacaatattgattcagccactgcatatgcatgataagtctttc
attttagagatatttcacctgatggtttggtttaatcttgggcaatattt
tgaaactattgtgtataatgtttaattttccaagacttcttttttggcaa
aattgaaattggaatataggtatgcagaaaagctactactattctatatt
tgtagcccactacttacttaatggtgtatatagagatgaggttcttagtg
gagcttgttgggtccttgatgtttgagttatatcttctgaaaatggggac
cttttgggtatttttattctttctctttaattcttctagtcatcttatgc
tttatcattctaggtaagatttaaacactgtactaattcaattgatgata
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_48511246_48512397
seq2: B6Ng01-324O18.b_50_1192 (reverse)

seq1  TCAATATTTTCCCACACAAAGAAAAAC-AGTAGTTATCTGGATTTGGTAA  49
      |||||||||  |||  |||  |||||| ||||| |||||||||| | |||
seq2  TCAATATTT--CCAACCAAGAAAAAACAAGTAG-TATCTGGATTAGTTAA  47

seq1  TCAATTAAAAATGTAAAACATATAATCCTGT-GAGGTTTTTAATCATAAT  98
      || ||||||||||||||||||||||| |||| ||||||||  ||||||||
seq2  TC-ATTAAAAATGTAAAACATATAAT-CTGTGGAGGTTTT--ATCATAAT  93

seq1  AAATTTATTGTTTATCTATATATTTTAT-AAAGAATGAATTGAT-AAAAA  146
      ||| ||||   ||||||||||||||||| |||||||||| |||| |||||
seq2  AAA-TTAT--GTTATCTATATATTTTATAAAAGAATGAA-TGATAAAAAA  139

seq1  GTGAATATCACTTATACATGCATGTGTTTAAACATATTTCACAGAGTTCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATCACTTATACATGCATGTGTTTAAACATATTTCACAGAGTTCT  189

seq1  TTTTCACGTACATAATCTTTGAATTTTGAGCAAACCTGAATAGAGTTTGA  246
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  TTTTCACGTACATAATC-TTGAATTTTGAGCAAA-CTGAATAGAGTTTGA  237

seq1  AATAAATGCAAAAAATTTCCCCAAAATCATAAAAAGTAAGAACATTAAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGCAAAAAATTTCCCCAAAATCATAAAAAGTAAGAACATTAAAT  287

seq1  AAGAAAATGAGCAAAAGAGGAAAGATTAGAGAAGATAATTTGTATAATCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGAGCAAAAGAGGAAAGATTAGAGAAGATAATTTGTATAATCA  337

seq1  TGAGTTTTATTTAAATACTTGTACATGGTCTGCATACACTTTATTGAATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTATTTAAATACTTGTACATGGTCTGCATACACTTTATTGAATA  387

seq1  GAGGTGTAAAGGAAAGCAAATGCTATGTTCTAAGTTCCTATTCAAATTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTAAAGGAAAGCAAATGCTATGTTCTAAGTTCCTATTCAAATTGC  437

seq1  CTCCAATCCTTTGGATGCCTGCAGTTTGCTATGAATGTAACCAGGATTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATCCTTTGGATGCCTGCAGTTTGCTATGAATGTAACCAGGATTTC  487

seq1  AAGATGAAGAGCTAATGCCATGATGTCGAATGGTTCTGGAAAAGATTGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAGAGCTAATGCCATGATGTCGAATGGTTCTGGAAAAGATTGGA  537

seq1  AGGTTAGTCCAAGATGTAGGAAGTGTTCACCAATTATATGTCATTGAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGTCCAAGATGTAGGAAGTGTTCACCAATTATATGTCATTGAAAA  587

seq1  GAATCTTGTCCTTGGCCTCTCTCTGCTTCAACTGCTCACAGGTGAGGCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTGTCCTTGGCCTCTCTCTGCTTCAACTGCTCACAGGTGAGGCAC  637

seq1  TCTGTACCACCTCCAGCTTCTGCTCGAGTGTCCAGGCTTACCCTAGGCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCACCTCCAGCTTCTGCTCGAGTGTCCAGGCTTACCCTAGGCCA  687

seq1  AGCAATCACAAATTGAATTCTTTGAACTATGAGGAAATAACTATTCCTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCACAAATTGAATTCTTTGAACTATGAGGAAATAACTATTCCTCC  737

seq1  ATTTGAAGTCACATATGTCACATTAAATTTCTTTTGAAAAATATCAATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTCACATATGTCACATTAAATTTCTTTTGAAAAATATCAATGA  787

seq1  ATACCTGAGTCTTACATGAAGTTTCCCCAGCTAAGACACTTTATTAGTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGAGTCTTACATGAAGTTTCCCCAGCTAAGACACTTTATTAGTGT  837

seq1  AATAATTAAGTTCCATTCTTAATTATTTGTATAGCTCATATCTTGTTTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAAGTTCCATTCTTAATTATTTGTATAGCTCATATCTTGTTTAT  887

seq1  TTTAATGTTACCATATGTGTAAACTTGTCATGCCTACAGGTTGTTAAGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTTACCATATGTGTAAACTTGTCATGCCTACAGGTTGTTAAGCA  937

seq1  AGGTTATCTCTTAATAATTTTCTGCGTGAACCTTACCTTAGTTAGGATTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATCTCTTAATAATTTTCTGCGTGAACCTTACCTTAGTTAGGATTA  987

seq1  TACTACTGTGAAAAGACACCATAATAAAGGTACCTCTTGTAAAGATGACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGTGAAAAGACACCATAATAAAGGTACCTCTTGTAAAGATGACA  1037

seq1  TTTACCTGGGGCTGGTTTACATGTTCAGAGAGATTAAGTCCATTATCATC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGGGGCTGGTTTACATGTTCAGAGAGATTAAGTCCATTATCATC  1087

seq1  AAAGCACTTGCATGGCAGCATCCAGGAAGGCCTGCTGCAGGAAGAGTTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTGCATGGCAGCATCCAGGAAGGCCTGCTGCAGGAAGAGTTGA  1137

seq1  GAATTC  1152
      ||||||
seq2  GAATTC  1143


seq1: chr10_48383252_48384016
seq2: B6Ng01-324O18.g_67_831

seq1  GAATTCAGCTGGAACAAAGGATGGGCCTTTGGGTTTTCCCCCTATATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGGAACAAAGGATGGGCCTTTGGGTTTTCCCCCTATATATT  50

seq1  TAGAGTTAAAAACTGAACATTAAGCCTTGATCAGAGACCTTTGTCTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTAAAAACTGAACATTAAGCCTTGATCAGAGACCTTTGTCTTGGC  100

seq1  TTCATTCCTTTCTACTTTATCCTGTTCCATCCCTATCTCTCCTTTCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCTTTCTACTTTATCCTGTTCCATCCCTATCTCTCCTTTCAGGT  150

seq1  ACCCAGTTTGATCAAAGCCACTGGACAGCAACAGGTGACTCCTCCTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTTTGATCAAAGCCACTGGACAGCAACAGGTGACTCCTCCTCCTT  200

seq1  TTCCTCTCAACTTCTCCTTTTGCCTCCAAGGTTTCTTTGCTGTATAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCAACTTCTCCTTTTGCCTCCAAGGTTTCTTTGCTGTATAAGTA  250

seq1  AAAATACTATTCCTAAAATATGTGTTGAATAAACTACATTTTTCTTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTATTCCTAAAATATGTGTTGAATAAACTACATTTTTCTTAGTG  300

seq1  TACATTTTGACACTTATCAAAATGTAGGTAGTTGTAGATTTGAGAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGACACTTATCAAAATGTAGGTAGTTGTAGATTTGAGAATTTA  350

seq1  TTTCTGAGTCACATGTTCTATTCCATTCTCTACGTGTATGCTTTGTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTCACATGTTCTATTCCATTCTCTACGTGTATGCTTTGTAGCT  400

seq1  GCACTATTGAATATTTACATTTATAGCTGTATAGTACAATTTGAAATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATTGAATATTTACATTTATAGCTGTATAGTACAATTTGAAATCAA  450

seq1  CTATTAGGATGCAGCCAGCATTGTTCTTGTTACAAAATTTTTGCTATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGGATGCAGCCAGCATTGTTCTTGTTACAAAATTTTTGCTATTCT  500

seq1  GGATCATTTTGTTTTTAGAATGTTTTCTAGTTTAGTGGGGAAGGCAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTTTGTTTTTAGAATGTTTTCTAGTTTAGTGGGGAAGGCAATGA  550

seq1  GAATGGTAGCGGGAAAAGTTCTAAATCTGTAGATTGCTTTAGCTGATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTAGCGGGAAAAGTTCTAAATCTGTAGATTGCTTTAGCTGATGTA  600

seq1  ACCATTTTACAATATTGATTCAGCCACTGCATATGCATGATAAGTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTACAATATTGATTCAGCCACTGCATATGCATGATAAGTCTTTC  650

seq1  ATTTTAGAGATATTTCACCTGATGGTTTGGTTTAATCTTGGGCAATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAGATATTTCACCTGATGGTTTGGTTTAATCTTGGGCAATATTT  700

seq1  TGAAACTATTGTGTATAATGTTTAATTTTCCAAGACTTCTTTTTTGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTATTGTGTATAATGTTTAATTTTCCAAGACTTCTTTTTTGGCAA  750

seq1  AATTGAAATTGGAAT  765
      |||||||||||||||
seq2  AATTGAAATTGGAAT  765


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