BAC Information

Click to search

BAC

Clone NameB6Ng01-325I13
Chromosome10 (Build37)
Map Location 19,845,327 - 19,846,547
singlet/doubletsinglet
Overlap geneMap3k5
Upstream geneEG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7
Downstream geneMtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202, Ahi1, Myb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325I13.bB6Ng01-325I13.g
ACCGA113568GA113569
length1,2191,138
definitionB6Ng01-325I13.b B6Ng01-325I13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccttaacatctggattgggtcactcttcccggttcacaatgtca
cctatgtaagcagggctgcggttagagaaccaggtggaagctggaaaatg
gtggctgagctccaaactcgtgccaagagtcagaatgacagcagctcagt
ctttccattggtccagcctcatccaaacgacccggtttaggagagagccg
gcctgaggcctttcgcatagcagttgctcccaaggaaatgaactacttct
tggacctcacttgctccaggggattctttcagagtgagcttgcagtacct
ccatttcttaaatggatctgcctgcttatgtgtctaaccaggctatcact
tagaacatgggagtatttcaagtgtgaatccttcatagccatggcccccc
tgcacatcccctcatcacacagcgtattgctcactgccgcattacacagc
gtattacccaacaagagcacttgacaggccaggagtgaaactgggttgag
cgagttgcatgactatgtctgacctgggcccaaggctcaggattacagct
aactagctctcactctgaattctccccaacctcctgcccagaagccaatg
tgtgggcaggcacaaatcagctacatcgttgcactggatggtagatggct
gggttgccatagttgcagtgtaagcatgccttagcatttaatattagtga
caggccctgcttggattctctaggacctcggtccagtcaggagaatcttg
ttcctgttcttcacacagcagaaacaccaagtcgtttccactcagaacac
cagtgactgtggaaggatgaagattcagtttggaatggaggattgtttct
tgtttcaaatacaaatgtcaagaaactacctaacacaggagtaatacatt
acaagttaatattaaacatttaaataaaaccacacagtgcaattttatat
ttgcatacaggcaccaccagatatttttcctgcctcccataccttgtgtg
tctgacagtggcttacaaagtctattttgaatcagacttgcagaataact
tctggtttgtcttgcataaagactgtcagtgatctcctcaattagattca
ccaagtagtttccactcaccaactgcctgtttccaaacttattttttatg
gtgggaaaaagtggatatttacgaaattgaacttgtagaatgtccttatt
gaaacagaaaagctttggg
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgaattg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctcccgttttttc
ttgaagcactcatagctatgagttcccctcttagaaatgctttcattgtg
tcccaaaggtttgggttacgttgtggcctcatttacattaaacctctaaa
aagttctttaatttcttctattatcctttccttgaccaaggatcatttga
aaagaagtggttggtcagtttcatggtgaaatgtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_19845327_19846547
seq2: B6Ng01-325I13.b_43_1261 (reverse)

seq1  CCCAAGGCTTTTCTCTGGTTTCCATATAGGACATTCTTAACAAGTTC-AT  49
      ||||| ||||||||   ||||| ||| ||||||||||  |||||||| ||
seq2  CCCAAAGCTTTTCT---GTTTCAATA-AGGACATTCT--ACAAGTTCAAT  44

seq1  TTCGTAAATATCCACTATTTTCCCACCATAAATA--TAGTTTGGAAAACA  97
      |||||||||||||||| ||||||||||||||| |   ||||||| |||||
seq2  TTCGTAAATATCCACT-TTTTCCCACCATAAAAAATAAGTTTGG-AAACA  92

seq1  GGCAGTTGGTGAGTGGAAACTAC-TCGTG-ATCTAA-TGA-GAGATCACT  143
      ||||||||||||||||||||||| | ||| |||||| ||| |||||||||
seq2  GGCAGTTGGTGAGTGGAAACTACTTGGTGAATCTAATTGAGGAGATCACT  142

seq1  GACAGTC-TTATGCAAGACAAACCAGAAGTTATTCTGCAAGTCTGATTCA  192
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTTTATGCAAGACAAACCAGAAGTTATTCTGCAAGTCTGATTCA  192

seq1  AAATAGACCTTTGTAAGCCACTGTCAGACACACAAGGTATGGGAGGCAGG  242
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGA-CTTTGTAAGCCACTGTCAGACACACAAGGTATGGGAGGCAGG  241

seq1  AAAAAATATCTGGTGGTGCCTGTATGCAAATATAAAATTGCACTGTGTGG  292
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAATATCTGGTGGTGCCTGTATGCAAATATAAAATTGCACTGTGTGG  290

seq1  TTTTATTTAAATGTTTAATATTAACTTGTAATGTATTACTCCTGTGTTAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAAATGTTTAATATTAACTTGTAATGTATTACTCCTGTGTTAG  340

seq1  GTAGTTTCTTGACATTTGTATTTGAAACAAGAAACAATCCTCCATTCCAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTCTTGACATTTGTATTTGAAACAAGAAACAATCCTCCATTCCAA  390

seq1  ACTGAATCTTCATCCTTCCACAGTCACTGGTGTTCTGAGTGGAAACGACT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCTTCATCCTTCCACAGTCACTGGTGTTCTGAGTGGAAACGACT  440

seq1  TGGTGTTTCTGCTGTGTGAAGAACAGGAACAAGATTCTCCTGACTGGACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTCTGCTGTGTGAAGAACAGGAACAAGATTCTCCTGACTGGACC  490

seq1  GAGGTCCTAGAGAATCCAAGCAGGGCCTGTCACTAATATTAAATGCTAAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTAGAGAATCCAAGCAGGGCCTGTCACTAATATTAAATGCTAAG  540

seq1  GCATGCTTACACTGCAACTATGGCAACCCAGCCATCTACCATCCAGTGCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTACACTGCAACTATGGCAACCCAGCCATCTACCATCCAGTGCA  590

seq1  ACGATGTAGCTGATTTGTGCCTGCCCACACATTGGCTTCTGGGCAGGAGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGTAGCTGATTTGTGCCTGCCCACACATTGGCTTCTGGGCAGGAGG  640

seq1  TTGGGGAGAATTCAGAGTGAGAGCTAGTTAGCTGTAATCCTGAGCCTTGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGAATTCAGAGTGAGAGCTAGTTAGCTGTAATCCTGAGCCTTGG  690

seq1  GCCCAGGTCAGACATAGTCATGCAACTCGCTCAACCCAGTTTCACTCCTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTCAGACATAGTCATGCAACTCGCTCAACCCAGTTTCACTCCTG  740

seq1  GCCTGTCAAGTGCTCTTGTTGGGTAATACGCTGTGTAATGCGGCAGTGAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCAAGTGCTCTTGTTGGGTAATACGCTGTGTAATGCGGCAGTGAG  790

seq1  CAATACGCTGTGTGATGAGGGGATGTGCAGGGGGGCCATGGCTATGAAGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACGCTGTGTGATGAGGGGATGTGCAGGGGGGCCATGGCTATGAAGG  840

seq1  ATTCACACTTGAAATACTCCCATGTTCTAAGTGATAGCCTGGTTAGACAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACTTGAAATACTCCCATGTTCTAAGTGATAGCCTGGTTAGACAC  890

seq1  ATAAGCAGGCAGATCCATTTAAGAAATGGAGGTACTGCAAGCTCACTCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGGCAGATCCATTTAAGAAATGGAGGTACTGCAAGCTCACTCTG  940

seq1  AAAGAATCCCCTGGAGCAAGTGAGGTCCAAGAAGTAGTTCATTTCCTTGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCCCCTGGAGCAAGTGAGGTCCAAGAAGTAGTTCATTTCCTTGG  990

seq1  GAGCAACTGCTATGCGAAAGGCCTCAGGCCGGCTCTCTCCTAAACCGGGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACTGCTATGCGAAAGGCCTCAGGCCGGCTCTCTCCTAAACCGGGT  1040

seq1  CGTTTGGATGAGGCTGGACCAATGGAAAGACTGAGCTGCTGTCATTCTGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGGATGAGGCTGGACCAATGGAAAGACTGAGCTGCTGTCATTCTGA  1090

seq1  CTCTTGGCACGAGTTTGGAGCTCAGCCACCATTTTCCAGCTTCCACCTGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCACGAGTTTGGAGCTCAGCCACCATTTTCCAGCTTCCACCTGG  1140

seq1  TTCTCTAACCGCAGCCCTGCTTACATAGGTGACATTGTGAACCGGGAAGA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAACCGCAGCCCTGCTTACATAGGTGACATTGTGAACCGGGAAGA  1190

seq1  GTGACCCAATCCAGATGTTAAGGGAATTC  1221
      |||||||||||||||||||||||||||||
seq2  GTGACCCAATCCAGATGTTAAGGGAATTC  1219