BAC Information

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BAC

Clone NameB6Ng01-326L13
Chromosome10 (Build37)
Map Location 29,467,773 - 29,585,914
singlet/doubletdoublet
Overlap geneLOC623064
Upstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12
Downstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326L13.bB6Ng01-326L13.g
ACCGA114461GA114462
length1,2451,101
definitionB6Ng01-326L13.b B6Ng01-326L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,584,681 - 29,585,914)(29,467,773 - 29,468,877)
sequence
gaattcagtcatgcacacttactttccaagattattagacctctgtaatg
gtataaacattggagttccagtacaaagtatctcctctgagagtacaaaa
tgcttcttgtaattctctcaggtatacatgagagaatattttaagcagac
tttattacacagatttaatttagttgtatcttttaagattcacatgggaa
ataattttgccaacattcttactctgacttaactagttgtataatttaag
attcatatccttaaaaggtattaccatgtcagtgttctaacagcaaatag
catgattttttttttcccaaacaggtcaagctttttattgttttagtact
aataagtcatgagagcatcacaagagactcactatttagcaagatctttt
ttaggaagcagaattttaattgatagtcagctttcatctctctaccacct
ttctttatttaggcagtcccactcagttaattaaagattaactcagtata
tatttaaattgtagccattaatcaaaattggaaaaatctgtctgatcttt
tttgacgttcagttcttatttcaatggaactcatcattataatacaaatc
ttttacgtggagatccagtcaagtaggcaaggcaaggcattcactctgta
tcttcaacctggtatattggtaattggtgggctactcagataattcataa
tcagctcatgtagtgggcatcaacaagtgtctctgaaaggttcactggca
ctgacagtgataatggaagatgctactggtagttaagaggtagaatctta
cagaaggtcattatgtcactgacaatgaatcttcaaaggggcactaggag
tccctgctcctttagagactttcttcaacctcctatttcatggcattggc
tgttttcctggcatgtgctcctgctttgtgctgcccttgtcatagaccaa
aagaatcctgtggttgacacttgactacatctggaatgaactacaatcca
gaaatgggggggcacactatgatccagatatggaggctgggaggacacag
gcttctgacccaaatcttggacagggagatcatggaggcatggttgggca
taaaaaggttaggcccaggaagaataggtaggtcttatccagggagaact
gggagataaacggagtcaaggccagcctggacaaaaaccaggtaccaaat
tccaagtggggtgccaacacaccctttaaactgggggcacacatc
gaattcttataaaggacaatatttaattggatctggcctatgggttcaga
ggttcagttcattatcatcaaagcagaaacatggtagcatccaggcaggc
atgacacaggaggagccacgagttctacatcttcatctaaaggttgctag
aagaagactggctcctaggccgctagaaggaaggtttctcaaggcccacc
cccacagtgacacacttcctccagcaaggccacacctcctaatagtgcca
ctctctggaccaagattattcaaataaatgagtatgggggtcaaaatatt
caaaccactacactctcattaaaatattcaatttaccaagttcaaatatt
aagtgatcttgtacttgaagtacctcattttgaaaaaaaaaatcaatgag
ctaaaaatatatgacagaggactttcttttaattagttcttaatttctcg
tgatttttctacttattcatttatttacataagaagcttcatacttgtgt
aattattttctttaatttacaatgtattgtttatcttatgtagattttct
cacattgcaatagtaatgtgctaaaaatttttttttatttttctgtctta
gtttcttcttcaacattaatgaccataggaatttctttgagagagatttt
tttattcattttttgcattagtgtgagtgtgagtgtgtatgtgtgtgtgt
gtgtgaatccaaagacaaatatataaacatatggcagtcagaggacaact
ttctagagttggttctttccttccaccaagtatgctcagggatgctgaag
agatagaacccaggatatcaggtttggcaataggtgcctttaccactgag
ctatttcatgggccccaattattaacttttagtcaataatttccccaaag
tatgtgagctcagcattgtctccatagccctttcagtatgcttttttttg
tggctggtgaaccatagaacacagcttgaaaaattgtttgccttgacaaa
ctctaggcaaaaagagctctaccttcagcatgtctcagtagcatgaatgc
tcactagcaaagcttacaggatattcttccatataaggtataactgaatt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_29584681_29585914
seq2: B6Ng01-326L13.b_49_1293 (reverse)

seq1  GATGTG---GCCCAGTTTAAA-GGTGTG-TGCAACCAAACTTGG-ATTTG  44
      ||||||    ||||||||||| |||||| ||  |||  |||||| |||||
seq2  GATGTGTGCCCCCAGTTTAAAGGGTGTGTTGGCACCCCACTTGGAATTTG  50

seq1  GAACTTG--TTTTGTCCCAGGCTGGCTTGAACTCTGTTTATCT--CAG-T  89
      | || ||  |||||| |||||||||| |  |||| ||||||||  ||| |
seq2  GTACCTGGTTTTTGT-CCAGGCTGGCCTTGACTCCGTTTATCTCCCAGTT  99

seq1  CTCCTGGAATTAAAGACATTACCTATCTTTCCTGGGCCTAAACTTTTTAT  139
      ||||  | ||  |||||  |||||||  ||||||||||||| ||||||||
seq2  CTCCCTGGAT--AAGAC-CTACCTATTCTTCCTGGGCCTAACCTTTTTAT  146

seq1  GCCC-ACCATGCCT-CATGATCTCCCTGT-CAAGATTTGGGTCAGAAGCC  186
      |||| ||||||||| |||||||||||||| ||||||||||||||||||||
seq2  GCCCAACCATGCCTCCATGATCTCCCTGTCCAAGATTTGGGTCAGAAGCC  196

seq1  TGTGT-CTTCCAGCCTCAATATCTGGATCATAGGTGTG-CCCCCCATTTC  234
      ||||| || |||||||| |||||||||||||| ||||| |||||||||||
seq2  TGTGTCCTCCCAGCCTCCATATCTGGATCATA-GTGTGCCCCCCCATTTC  245

seq1  TGGATTGTAGTTCATTCCAGATGTAGTCAAGTTGTCAACCACAGGATTCT  284
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGATTGTAGTTCATTCCAGATGTAGTCAAG-TGTCAACCACAGGATTCT  294

seq1  TTTGGTCTATGACAAGGGCAGCACAAAGCAGGAGCACATGCCAGGAAAAC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTATGACAAGGGCAGCACAAAGCAGGAGCACATGCCAGGAAAAC  344

seq1  AGCCAATGCCATGAAATAGGAGGTTGAAGAAAGTCTCTAAAGGAGCAGGG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATGCCATGAAATAGGAGGTTGAAGAAAGTCTCTAAAGGAGCAGGG  394

seq1  ACTCCTAGTG-CCCTTTGAAGATTCATTGTCAGTGACATAATGACCTTCT  433
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAGTGCCCCTTTGAAGATTCATTGTCAGTGACATAATGACCTTCT  444

seq1  GTAAGATTCTACCTCTTAACTACCAGTAGCATCTTCCATTATCACTGTCA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATTCTACCTCTTAACTACCAGTAGCATCTTCCATTATCACTGTCA  494

seq1  GTGCCAGTGAACCTTTCAGAGACACTTGTTGATGCCCACTACATGAGCTG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGTGAACCTTTCAGAGACACTTGTTGATGCCCACTACATGAGCTG  544

seq1  ATTATGAATTATCTGAGTAGCCCACCAATTACCAATATACCAGGTTGAAG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAATTATCTGAGTAGCCCACCAATTACCAATATACCAGGTTGAAG  594

seq1  ATACAGAGTGAATGCCTTGCCTTGCCTACTTGACTGGATCTCCACGTAAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGTGAATGCCTTGCCTTGCCTACTTGACTGGATCTCCACGTAAA  644

seq1  AGATTTGTATTATAATGATGAGTTCCATTGAAATAAGAACTGAACGTCAA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTATTATAATGATGAGTTCCATTGAAATAAGAACTGAACGTCAA  694

seq1  AAAAGATCAGACAGATTTTTCCAATTTTGATTAATGGCTACAATTTAAAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCAGACAGATTTTTCCAATTTTGATTAATGGCTACAATTTAAAT  744

seq1  ATATACTGAGTTAATCTTTAATTAACTGAGTGGGACTGCCTAAATAAAGA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTGAGTTAATCTTTAATTAACTGAGTGGGACTGCCTAAATAAAGA  794

seq1  AAGGTGGTAGAGAGATGAAAGCTGACTATCAATTAAAATTCTGCTTCCTA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGTAGAGAGATGAAAGCTGACTATCAATTAAAATTCTGCTTCCTA  844

seq1  AAAAAGATCTTGCTAAATAGTGAGTCTCTTGTGATGCTCTCATGACTTAT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATCTTGCTAAATAGTGAGTCTCTTGTGATGCTCTCATGACTTAT  894

seq1  TAGTACTAAAACAATAAAAAGCTTGACCTGTTTGGGAAAAAAAAAATCAT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTAAAACAATAAAAAGCTTGACCTGTTTGGGAAAAAAAAAATCAT  944

seq1  GCTATTTGCTGTTAGAACACTGACATGGTAATACCTTTTAAGGATATGAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGCTGTTAGAACACTGACATGGTAATACCTTTTAAGGATATGAA  994

seq1  TCTTAAATTATACAACTAGTTAAGTCAGAGTAAGAATGTTGGCAAAATTA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATTATACAACTAGTTAAGTCAGAGTAAGAATGTTGGCAAAATTA  1044

seq1  TTTCCCATGTGAATCTTAAAAGATACAACTAAATTAAATCTGTGTAATAA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATGTGAATCTTAAAAGATACAACTAAATTAAATCTGTGTAATAA  1094

seq1  AGTCTGCTTAAAATATTCTCTCATGTATACCTGAGAGAATTACAAGAAGC  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTTAAAATATTCTCTCATGTATACCTGAGAGAATTACAAGAAGC  1144

seq1  ATTTTGTACTCTCAGAGGAGATACTTTGTACTGGAACTCCAATGTTTATA  1183
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTACTCTCAGAGGAGATACTTTGTACTGGAACTCCAATGTTTATA  1194

seq1  CCATTACAGAGGTCTAATAATCTTGGAAAGTAAGTGTGCATGACTGAATT  1233
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAGAGGTCTAATAATCTTGGAAAGTAAGTGTGCATGACTGAATT  1244

seq1  C  1234
      |
seq2  C  1245

seq1: chr10_29467773_29468877
seq2: B6Ng01-326L13.g_65_1165

seq1  GAATTCTTATAAAGGACAATATTTAATTGGATCTGGCCTATGGGTTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAAAGGACAATATTTAATTGGATCTGGCCTATGGGTTCAGA  50

seq1  GGTTCAGTTCATTATCATCAAAGCAGAAACATGGTAGCATCCAGGCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTTCATTATCATCAAAGCAGAAACATGGTAGCATCCAGGCAGGC  100

seq1  ATGACACAGGAGGAGCCACGAGTTCTACATCTTCATCTAAAGGTTGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACAGGAGGAGCCACGAGTTCTACATCTTCATCTAAAGGTTGCTAG  150

seq1  AAGAAGACTGGCTCCTAGGCCGCTAGAAGGAAGGTTTCTCAAGGCCCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGACTGGCTCCTAGGCCGCTAGAAGGAAGGTTTCTCAAGGCCCACC  200

seq1  CCCACAGTGACACACTTCCTCCAGCAAGGCCACACCTCCTAATAGTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTGACACACTTCCTCCAGCAAGGCCACACCTCCTAATAGTGCCA  250

seq1  CTCTCTGGACCAAGATTATTCAAATAAATGAGTATGGGGGTCAAAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGACCAAGATTATTCAAATAAATGAGTATGGGGGTCAAAATATT  300

seq1  CAAACCACTACACTCTCATTAAAATATTCAATTTACCAAGTTCAAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACTACACTCTCATTAAAATATTCAATTTACCAAGTTCAAATATT  350

seq1  AAGTGATCTTGTACTTGAAGTACCTCATTTTGAAAAAAAAAATCAATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATCTTGTACTTGAAGTACCTCATTTTGAAAAAAAAAATCAATGAG  400

seq1  CTAAAAATATATGACAGAGGACTTTCTTTTAATTAGTTCTTAATTTCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATATATGACAGAGGACTTTCTTTTAATTAGTTCTTAATTTCTCG  450

seq1  TGATTTTTCTACTTATTCATTTATTTACATAAGAAGCTTCATACTTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTCTACTTATTCATTTATTTACATAAGAAGCTTCATACTTGTGT  500

seq1  AATTATTTTCTTTAATTTACAATGTATTGTTTATCTTATGTAGATTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTCTTTAATTTACAATGTATTGTTTATCTTATGTAGATTTTCT  550

seq1  CACATTGCAATAGTAATGTGCTAAAAATTTTTTTTTATTTTTCTGTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGCAATAGTAATGTGCTAAAAATTTTTTTTTATTTTTCTGTCTTA  600

seq1  GTTTCTTCTTCAACATTAATGACCATAGGAATTTCTTTGAGAGAGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTTCAACATTAATGACCATAGGAATTTCTTTGAGAGAGATTTT  650

seq1  TTTATTCATTTTTTGCATTAGTGTGAGTGTGAGTGTGTATGTGTGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATTTTTTGCATTAGTGTGAGTGTGAGTGTGTATGTGTGTGTGT  700

seq1  GTGTGAATCCAAAGACAAATATATAAACATATGGCAGTCAGAGGACAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAATCCAAAGACAAATATATAAACATATGGCAGTCAGAGGACAACT  750

seq1  TTCTAGAGTTGGTTCTTTCCTTCCACCAAGTATGCTCAGGGATGCTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGTTGGTTCTTTCCTTCCACCAAGTATGCTCAGGGATGCTGAAG  800

seq1  AGATAGAACCCAGGATATCAGGTTTGGCAATAGGTGCCTTTACCACTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAACCCAGGATATCAGGTTTGGCAATAGGTGCCTTTACCACTGAG  850

seq1  CTATTTCATGGGCCCCAATTATTAACTTTTAGTCAATAATTTCCCCAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCATGGGCCCCAATTATTAACTTTTAGTCAATAATTTCCCCAAAG  900

seq1  TATGTGAGCTCAGCATTGTCTCCATAGCCC-TTCAGTATGCTTTTTTTTG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATGTGAGCTCAGCATTGTCTCCATAGCCCTTTCAGTATGCTTTTTTTTG  950

seq1  TGGCTGGTGAACCATAGAACACAGCTTGAAAAA-TGTTTG-CTTGACAAA  997
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  TGGCTGGTGAACCATAGAACACAGCTTGAAAAATTGTTTGCCTTGACAAA  1000

seq1  CTCTTAGGCAAAAAGAGCTCTA-CTTCAGGCATGTCTCAGTAGCATGGAT  1046
      ||| |||||||||||||||||| ||||| |||||||||||||||||| ||
seq2  CTC-TAGGCAAAAAGAGCTCTACCTTCA-GCATGTCTCAGTAGCATGAAT  1048

seq1  GCTCACTACCAAAGGCTTACAGGATATTTCTTCACAATATAAAAGTATTA  1096
      |||||||| |||| |||||||||||| |||||  | |||| || ||| ||
seq2  GCTCACTAGCAAA-GCTTACAGGATA-TTCTT--CCATAT-AAGGTA-TA  1092

seq1  ACTGAATTA  1105
      |||||||||
seq2  ACTGAATTA  1101