BAC Information

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BAC

Clone NameB6Ng01-327D08
Chromosome10 (Build37)
Map Location 110,437,081 - 110,437,873
singlet/doubletsinglet
Overlap geneZdhhc17
Upstream geneNav3, LOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2
Downstream geneEG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327D08.bB6Ng01-327D08.g
ACCGA114817GA114818
length1,171939
definitionB6Ng01-327D08.b B6Ng01-327D08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctggtctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggtagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaagggaatagttccacttactat
cactccttgtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcctaaaagttttggctccagagaggggaatgctccta
ccaggagctacaacaaacattccattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgcaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacacagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggtgaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatgcccattgtaaatttactaatgcgtttgcgat
tgtacgagggatagttatatcatgttaggcgtatttacaaccttgttatt
gttttatgtgaacatgagattattatttgtgtcaagttgacaaggggtgg
attgtagtggctattccctgggttgtcaacttgacatattttggaatgaa
ctacattcgggaattggaagctcaccagtgacccttatctggaggctgaa
tcttatctggatctggttgagatctgagcatagtggctatggaattcaga
agatggatctcgagttaggaccacgttagttgcactactcatcatctggc
attttaaaaggtggttgtggc
gaattcacacagttgaatccttctcaacagtctgtgatgcgggaacactt
tattaccatcgttccccagctgaagagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaaccttcattaccataacccgcagtt
ctggttccggaatgagggatcttccttgcgccggtgatggttaactcccg
tcccgagttttcttgtattttctcgtcccgggtttcagcaccaactctta
aacgcgttctcacgaccggccaggaagaacacaacaaaccagaatcttct
gcggcaaaactttattgcttacatcttcaggagcaggagcgcaagcccca
agccccaaaaacgaaagcccccgcttacatctttaggagccagagcgcca
gcgcgccagagcgccagagcgcagagcaagagctctattgtttacatctt
taggagcaagcgagcaagagccagagccagagagcaaaagcgcaagagca
caagcaagagagagaatggcggaaaccccgtcccctttaaggagaattat
ccttcgcctaggacgtatcactccctgattggctgcagcccatggccgag
ttgttgccacggggaaggcagagtacatggggtagagaaatacccttggc
acatgcgcagattatttgtttaccacttagaacacaggatgtcagcgcca
tcttgtgacggcgaatgtgggggcggctcccaacaatctggcaccatttc
ttatcaaaattgctttggtcagagtcttttatcagggaaataggacagat
agcaaatacatagaagttgcctgtttgagaattggccctgaacactcaga
ggtgtgccagttattgactgagaatgtcatacttggcagaaaacacagct
atctagtctgacgaatgcacaagccgttggatgctgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_110437081_110437873
seq2: B6Ng01-327D08.g_69_763 (reverse)

seq1  CTGACA-GCTGTGTTCTAAGTAGTGAAC--ATAATCTGCACACGTG-CAG  46
      ||||||  ||||||||||||| || |||  ||||||||| || ||| || 
seq2  CTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAA  50

seq1  GGGCAGTTTTC-CCACCATGTGTTCTGCCTTTCTCGTGATGACAACTGGG  95
      ||| | || ||  | ||||||  |||||||| | ||||   |||||| ||
seq2  GGGTATTTCTCTACCCCATGTACTCTGCCTTCCCCGTGGCAACAACTCGG  100

seq1  CTGATGGGCTGCAGCCAATCAGGGAGTAATACGTCCTAGGCGGAGGATAA  145
      |  |||||||||||||||||||||||| |||||||||||||| |||||||
seq2  C-CATGGGCTGCAGCCAATCAGGGAGTGATACGTCCTAGGCGAAGGATAA  149

seq1  TTCTCCTTAAAAGGGACGGGGTTT-TGCCATTCTTTTTCTCTCTCTTCTC  194
      ||||||||||| ||||||||||||  |||||||             ||||
seq2  TTCTCCTTAAAGGGGACGGGGTTTCCGCCATTC-------------TCTC  186

seq1  TTGCTTTCTTGTTCTTTTTCTTGCTTTCTTGCTCTCTCTTGCTCTGGCTC  244
      |  ||| ||||| |    ||||||  | |||  |||||| ||||||||||
seq2  T--CTTGCTTGTGC----TCTTGCGCTTTTG--CTCTCTGGCTCTGGCTC  228

seq1  TTGCT-TCTTGCTCCTAAAGATGTAAGCAATAAAGCTCTT----------  283
      |||||  ||||||||||||||||||| ||||| |||||||          
seq2  TTGCTCGCTTGCTCCTAAAGATGTAAACAATAGAGCTCTTGCTCTGCGCT  278

seq1  -------------------GCGCTCTGGCTCCTAAAGATGTAAGCAATAG  314
                         ||||||||||||||||||||||||||    |
seq2  CTGGCGCTCTGGCGCGCTGGCGCTCTGGCTCCTAAAGATGTAAGC--GGG  326

seq1  AGCTCTTGCTCT------------CTTGCACTCTTGCTCCTGAAGATGTA  352
       ||| | | | |            ||||| ||| ||||||||||||||||
seq2  GGCTTTCGTTTTTGGGGCTTGGGGCTTGCGCTCCTGCTCCTGAAGATGTA  376

seq1  AGCAATAAAGTTTTGCCGCAGAAGATTCTGGTTTGCTGTGTTCTTCCTGG  402
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCAATAAAGTTTTGCCGCAGAAGATTCTGGTTTGTTGTGTTCTTCCTGG  426

seq1  CCGGTCGTGAGAACGCGTGTAAGAGTTGGTGCCGAAAACCCGGGAAGAAA  452
      |||||||||||||||||| ||||||||||||| ||               
seq2  CCGGTCGTGAGAACGCGTTTAAGAGTTGGTGCTGA---------------  461

seq1  GAACCCGGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCGGGACAAG  502
                                                        
seq2  --------------------------------------------------  461

seq1  AAAACTCGGGACGGGACGAGAAGACCTGGGACGAGAAAACCCGGGAAGAA  552
                                                        
seq2  --------------------------------------------------  461

seq1  AGAACCCGGGACGAAAAAACCCGGGACAAGAAAACTCGGGACGGGAGTTA  602
        |||||||||||| ||||      |||||||||||||||||||||||||
seq2  --AACCCGGGACGAGAAAA-----TACAAGAAAACTCGGGACGGGAGTTA  504

seq1  ACCATCACCGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTGCGGG  652
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACCGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTGCGGG  554

seq1  TCACGGTCATAAAGGTTCCGGTAAAACAGACTGTTGAGAAGGATTCAACT  702
      | | ||| || |||||||| ||||||||||||||||||||||||||||||
seq2  TTATGGTAATGAAGGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACT  604

seq1  GCGTGAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCC  752
      |||||||||||||||||||||||||||||| | ||||||| |||||||||
seq2  GCGTGAATTCAGAACTCTTCAGCTGGGGAACGATGGTAATAAAGTGTTCC  654

seq1  CGCAACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTC  793
      |||| ||||||||||||||||||||||||||| ||||||||
seq2  CGCATCACAGACTGTTGAGAAGGATTCAACTGTGTGAATTC  695