BAC Information

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BAC

Clone NameB6Ng01-327K06
Chromosome10 (Build37)
Map Location 104,672,939 - 104,816,088
singlet/doubletdoublet
Overlap geneTmtc2
Upstream geneLOC100042383
Downstream geneEG627573, BC067068, Ccdc59, EG667758, EG639162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327K06.bB6Ng01-327K06.g
ACCGA115133GA115134
length1,1761,127
definitionB6Ng01-327K06.b B6Ng01-327K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,672,939 - 104,674,110)(104,814,968 - 104,816,088)
sequence
gaattcccaccagaaaacaactctatgctcagggtattttatatgtctta
tgtcagaacagtccgaataattccaacttctgcctggacttccagtgctt
cattctgctctacctaccttctcctatgagcatttttactatataaaggt
actaaaaattaaaagtaacatatcacaaaagaggaacactattcaaccag
atgtcagatgcactttgtcatagtaaaggttttttttttttaaaccaaat
tcctatatatgtcattttgaacttgtgacatacaacactgggagagaggc
aggaggttagcaccagattgtgtttatgaatccagaaatcaatttaaaat
ttaagtgcctgggaaagttaaagctcagacgtgaaactttcaattaaata
atccaggggatatggtttcccgttaatatttatacaatgaatacatgtct
aaagtgaaatagtacaccaatgagaaatgaatatgaatacatgtatgaat
aaaatgtacaaataagacgtagcataggtcagaagtctgagtcaaaagtc
taatctataagtgatttcagaaatccatttataggtatagaatgactcgt
tgcttacaaaacacactttcaacaggcagctgtttgttttgcatggctac
ttgagacctctaagatatatggtttcttgtgcacctcaaagctctaagga
acctatgagtatttaatctcaaattcagccttttcttcatcaggatcaga
agatagctaaatgacacatgtatttatttacttggcacctcctcccttac
tacataaactcagtcccctgcctcttcattttttcacctatgttacttca
acatatcacattcgtttttcttctatctcccaggaagaaacctactcttt
aagacttcaatattttcagcattgcttcttgtatttggacagatctttca
tatcacatttaaatgtgtgcacttcttacactatcttatttttgatttat
acatttatgtctcttctttttttaatttctacaacctttcgtccagaatg
tttatgagccccatgactgcttctttctttttcttagtagctgaaaactt
gtccccgttccactaggtatgcaatgggatcttaaaggccaccaaggcat
ctttcttctcttgccatcagttagac
gaattcccagttacaaaagctggacatgaaggcacacgcttataatcttc
acagagacaaatcagagaatcccagagacctcaccagccaatcaggatgt
tccaagttggcaatctactgtctcaaaagtaagcgtagatcaatagagta
tgccactggatgttcaacttgggccacaccatgtgcacctacagatattt
ggtcttacacacacacacacacacacacaccacagtttacaattaatttt
cctaagtcacttattttatttagaaagtaacacaggcttttcttagaaag
ccatgttccattaaatcagatatgctatatatgcttggatatctagagtc
ttgtgtccactgtctcctttatgaaaaaattttggtgagttataatctgc
gaaagttgctattggtgaattttaatctctaagtgattaattaccctaac
ttctatgtttacctgatgtactaaagacttcttttggttgttgaatttag
tgggaaatattattgtatgttatagaaccagagtaaatagaaaagttttt
atcatgccaatcttcaaagtctttaatcacaaatactaggacttctctac
cttctttgtgtcttttaaaataccagacattaaaattctttcatcttatc
tgtttctcagtgtgtggggggaaaggatttctgatctttcataaaagcta
tttattagggaaactcatttttcttttaaagcgaaacagattaccttcac
agacaacttaaaaaaaattcattaaccacagaaatctgttctagatggaa
ataattcctgtttatacttttgcacatgtattctttttttgtcactgttc
aggcagttgtggatttatatttctgttgtagggtaaagatcccgtgagga
tttcctggggcaggaggagagctatgttattctattctatgttattgata
aagagaagctttggcttcactgataactgacagatacaaaatgggtggtg
ttatggtttgtatgtctgcagaactccttttctgtcgctagaggcttcag
gaactggattttatctacttttaatctcttagaacccactcctcatgcca
aggcttaaatttgggattaaatgagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104672939_104674110
seq2: B6Ng01-327K06.b_47_1222

seq1  GAATTCCCACCAGAAAACAACTCTATGCTCAGGGTATTTTATATGTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACCAGAAAACAACTCTATGCTCAGGGTATTTTATATGTCTTA  50

seq1  TGTCAGAACAGTCCGAATAATTCCAACTTCTGCCTGGACTTCCAGTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAACAGTCCGAATAATTCCAACTTCTGCCTGGACTTCCAGTGCTT  100

seq1  CATTCTGCTCTACCTACCTTCTCCTATGAGCATTTTTACTATATAAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCTCTACCTACCTTCTCCTATGAGCATTTTTACTATATAAAGGT  150

seq1  ACTAAAAATTAAAAGTAACATATCACAAAAGAGGAACACTATTCAACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATTAAAAGTAACATATCACAAAAGAGGAACACTATTCAACCAG  200

seq1  ATGTCAGATGCACTTTGTCATAGTAAAGGTTTTTTTTTTTTAAACCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGATGCACTTTGTCATAGTAAAGGTTTTTTTTTTTTAAACCAAAT  250

seq1  TCCTATATATGTCATTTTGAACTTGTGACATACAACACTGGGAGAGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATATATGTCATTTTGAACTTGTGACATACAACACTGGGAGAGAGGC  300

seq1  AGGAGGTTAGCACCAGATTGTGTTTATGAATCCAGAAATCAATTTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTAGCACCAGATTGTGTTTATGAATCCAGAAATCAATTTAAAAT  350

seq1  TTAAGTGCCTGGGAAAGTTAAAGCTCAGACGTGAAACTTTCAATTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGCCTGGGAAAGTTAAAGCTCAGACGTGAAACTTTCAATTAAATA  400

seq1  ATCCAGGGGATATGGTTTCCCGTTAATATTTATACAATGAATACATGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGGATATGGTTTCCCGTTAATATTTATACAATGAATACATGTCT  450

seq1  AAAGTGAAATAGTACACCAATGAGAAATGAATATGAATACATGTATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAATAGTACACCAATGAGAAATGAATATGAATACATGTATGAAT  500

seq1  AAAATGTACAAATAAGACGTAGCATAGGTCAGAAGTCTGAGTCAAAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTACAAATAAGACGTAGCATAGGTCAGAAGTCTGAGTCAAAAGTC  550

seq1  TAATCTATAAGTGATTTCAGAAATCCATTTATAGGTATAGAATGACTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTATAAGTGATTTCAGAAATCCATTTATAGGTATAGAATGACTCGT  600

seq1  TGCTTACAAAACACACTTTCAACAGGCAGCTGTTTGTTTTGCATGGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACAAAACACACTTTCAACAGGCAGCTGTTTGTTTTGCATGGCTAC  650

seq1  TTGAGACCTCTAAGATATATGGTTTCTTGTGCACCTCAAAGCTCTAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCTCTAAGATATATGGTTTCTTGTGCACCTCAAAGCTCTAAGGA  700

seq1  ACCTATGAGTATTTAATCTCAAATTCAGCCTTTTCTTCATCAGGATCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGAGTATTTAATCTCAAATTCAGCCTTTTCTTCATCAGGATCAGA  750

seq1  AGATAGCTAAATGACACATGTATTTATTTACTTGGCACCTCCTCCCTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCTAAATGACACATGTATTTATTTACTTGGCACCTCCTCCCTTAC  800

seq1  TACATAAACTCAGTCCCCTGCCTCTTCATTTTTTCACCTATGTTACTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAACTCAGTCCCCTGCCTCTTCATTTTTTCACCTATGTTACTTCA  850

seq1  ACATATCACATTCGTTTTTCTTCTATCTCCCAGGAAGAAACCTACTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCACATTCGTTTTTCTTCTATCTCCCAGGAAGAAACCTACTCTTT  900

seq1  AAGACTTCAATATTTTCAGCATTGCTTCTTGTATTTGGACAGATCTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCAATATTTTCAGCATTGCTTCTTGTATTTGGACAGATCTTTCA  950

seq1  TATCACATTTAAATGTGTGCACTTCTTACAACTATCTTTATTTTTTGATT  1000
      ||||||||||||||||||||||||||||| ||||||||   |||||||||
seq2  TATCACATTTAAATGTGTGCACTTCTTAC-ACTATCTT--ATTTTTGATT  997

seq1  TATACATTTATGTCTCTTCTTTTTTTTAATTTCTACAACC-TTCGTCCAG  1049
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  TATACATTTATGTCTCTTC-TTTTTTTAATTTCTACAACCTTTCGTCCAG  1046

seq1  AATGTTTAATGAGCCCCATGACTGC-TCTT--CTTTTCTTAGTAGCTGAA  1096
      ||||||| ||||||||||||||||| ||||   |||||||||||||||||
seq2  AATGTTT-ATGAGCCCCATGACTGCTTCTTTCTTTTTCTTAGTAGCTGAA  1095

seq1  AAC-TGTCCCCGT--CACTA-GTATGGAAATGGGATCTTAAAGGCCACCA  1142
      ||| |||||||||  ||||| |||| | ||||||||||||||||||||||
seq2  AACTTGTCCCCGTTCCACTAGGTAT-GCAATGGGATCTTAAAGGCCACCA  1144

seq1  AGGGGCATCTTTC-TCTCT--GCATCAG-TAGAC  1172
      |  |||||||||| |||||   |||||| |||||
seq2  A--GGCATCTTTCTTCTCTTGCCATCAGTTAGAC  1176

seq1: chr10_104814968_104816088
seq2: B6Ng01-327K06.g_63_1189 (reverse)

seq1  GGCTCATTTAATTCCAAATTAAGCCCTTGGCAATGA-GAGT-GGTTCTAA  48
      |||||||||||| ||||||| |  ||||||| |||| |||| ||||||||
seq2  GGCTCATTTAATCCCAAATTTAAGCCTTGGC-ATGAGGAGTGGGTTCTAA  49

seq1  GA-AT--AAAGTAGATAAAAATCAGTTCCTGAAAGCTCT---GACAGAGG  92
      || ||  |||||||||||||  |||||||||||  ||||   ||||||  
seq2  GAGATTAAAAGTAGATAAAATCCAGTTCCTGAAGCCTCTAGCGACAGA-A  98

seq1  AAAGAG-TCTGCAGACATAACAAACCAT-ACACCACCCATTTTGTATCTG  140
      || ||| ||||||||||| ||||||||| |||||||||||||||||||||
seq2  AAGGAGTTCTGCAGACAT-ACAAACCATAACACCACCCATTTTGTATCTG  147

seq1  TCAGTTATCAGTGAAGCCAAAGCTTTCTCTTTATCAATAACATAGAATAG  190
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAGTTATCAGTGAAGCCAAAGC-TTCTCTTTATCAATAACATAGAATAG  196

seq1  AATAACATAGCTCTCCTCCTGCCCCAGGAAATCCTCACGGGATCTTTACC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATAGCTCTCCTCCTGCCCCAGGAAATCCTCACGGGATCTTTACC  246

seq1  CTACAACAGAAATATAAATCCACAACTGCCTGAACAGTGACAAAAAAAGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACAGAAATATAAATCCACAACTGCCTGAACAGTGACAAAAAAAGA  296

seq1  ATACATGTGCAAAAGTATAAACAGGAATTATTTCCATCTAGAACAGATTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTGCAAAAGTATAAACAGGAATTATTTCCATCTAGAACAGATTT  346

seq1  CTGTGGTTAATGAATTTTTTTTAAGTTGTCTGTGAAGGTAATCTGTTTCG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTAATGAATTTTTTTTAAGTTGTCTGTGAAGGTAATCTGTTTCG  396

seq1  CTTTAAAAGAAAAATGAGTTTCCCTAATAAATAGCTTTTATGAAAGATCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGAAAAATGAGTTTCCCTAATAAATAGCTTTTATGAAAGATCA  446

seq1  GAAATCCTTTCCCCCCACACACTGAGAAACAGATAAGATGAAAGAATTTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCTTTCCCCCCACACACTGAGAAACAGATAAGATGAAAGAATTTT  496

seq1  AATGTCTGGTATTTTAAAAGACACAAAGAAGGTAGAGAAGTCCTAGTATT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGGTATTTTAAAAGACACAAAGAAGGTAGAGAAGTCCTAGTATT  546

seq1  TGTGATTAAAGACTTTGAAGATTGGCATGATAAAAACTTTTCTATTTACT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTAAAGACTTTGAAGATTGGCATGATAAAAACTTTTCTATTTACT  596

seq1  CTGGTTCTATAACATACAATAATATTTCCCACTAAATTCAACAACCAAAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTATAACATACAATAATATTTCCCACTAAATTCAACAACCAAAA  646

seq1  GAAGTCTTTAGTACATCAGGTAAACATAGAAGTTAGGGTAATTAATCACT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTTAGTACATCAGGTAAACATAGAAGTTAGGGTAATTAATCACT  696

seq1  TAGAGATTAAAATTCACCAATAGCAACTTTCGCAGATTATAACTCACCAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTAAAATTCACCAATAGCAACTTTCGCAGATTATAACTCACCAA  746

seq1  AATTTTTTCATAAAGGAGACAGTGGACACAAGACTCTAGATATCCAAGCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTCATAAAGGAGACAGTGGACACAAGACTCTAGATATCCAAGCA  796

seq1  TATATAGCATATCTGATTTAATGGAACATGGCTTTCTAAGAAAAGCCTGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCATATCTGATTTAATGGAACATGGCTTTCTAAGAAAAGCCTGT  846

seq1  GTTACTTTCTAAATAAAATAAGTGACTTAGGAAAATTAATTGTAAACTGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTCTAAATAAAATAAGTGACTTAGGAAAATTAATTGTAAACTGT  896

seq1  GGTGTGTGTGTGTGTGTGTGTGTGTAAGACCAAATATCTGTAGGTGCACA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGTGTGTGTGTGTGTGTGTAAGACCAAATATCTGTAGGTGCACA  946

seq1  TGGTGTGGCCCAAGTTGAACATCCAGTGGCATACTCTATTGATCTACGCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGGCCCAAGTTGAACATCCAGTGGCATACTCTATTGATCTACGCT  996

seq1  TACTTTTGAGACAGTAGATTGCCAACTTGGAACATCCTGATTGGCTGGTG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGAGACAGTAGATTGCCAACTTGGAACATCCTGATTGGCTGGTG  1046

seq1  AGGTCTCTGGGATTCTCTGATTTGTCTCTGTGAAGATTATAAGCGTGTGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTGGGATTCTCTGATTTGTCTCTGTGAAGATTATAAGCGTGTGC  1096

seq1  CTTCATGTCCAGCTTTTGTAACTGGGAATTC  1121
      |||||||||||||||||||||||||||||||
seq2  CTTCATGTCCAGCTTTTGTAACTGGGAATTC  1127