BAC Information

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BAC

Clone NameB6Ng01-329C20
Chromosome10 (Build37)
Map Location 103,825,519 - 103,967,780
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329C20.bB6Ng01-329C20.g
ACCGA116223GA116224
length1,1001,149
definitionB6Ng01-329C20.b B6Ng01-329C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,825,519 - 103,826,622)(103,966,629 - 103,967,780)
sequence
gaattcattgtacagtagagtggactatttattttacctatcaacagaga
ctgggtgtgtccttagtcagtattttctcataaatcattaatatacattt
gttttctatgagtcattgaattaatgatttatgttagtcccattgtcttt
tctccatattattttgtataaattgttcgaattatataatcagaaaattc
attttcacttacttttttttcaaggccaagaaattttacattaattctta
atttttctgtgtaccaggagaaacattaatgatgaatccacaatggcaag
tataaaatagatttacaagttttgatagacaattatgaggtaatccatat
aatttcatttagaaaaagtgtttttgaaatagaatttattaccactagcc
atttttatgataaaaacatgttgctgagaaaaaacatggaaaaataaaca
atttaacttgataaagatagtcatattgaaattaaatttgtttatttttt
ctattagtaatgatgaccaaattttattttttagcatataggagaatttc
caatttccatacctctaaactgatcattcaaaataggaggacaaacaaat
agaaaaatcattacaatattttaatacgtcatataaagttagaacacaag
ccaagggaaaatgttcttataatcatttccagatgttgacttcatacgtg
tatgtttttctgtagagaatatattcataagcattttctaaaattcaaat
ataaaatgaatctatgtttaggaaaatgcttaactgccttatttattttg
tagggtaaatattcaatgaatactgacgtgaagaattggaaaacaaatat
aaattgtcttactttttaactttctaaactgaaaataatattttgcatac
aatatattgtgattacagtttaccctccctctgctcttcctgctccccct
ttcctctccagattcacctcatctttctcattaataaatgggaatctaag
agatataataaagtataacataataaataaaattaacagccctgataaga
caaaacaaacagaagaaaaaagagctctcaaaagcacagaatcacataga


gaattcactttcttaattgcttctcagaaatactgtttgttatgttcaac
gcatataaattatgttttaacttaactatttttaccccagtcccatgaag
aaacatgggtaaaatcatgacaaggaagtttgcctgtatgtcatcatatg
atccatatattgatttctgatattatttcaataaaaatacgctactcaaa
tgaaggtttggggtgcaattcatacttactagacttttacaagtcccttt
ctcacccatggccaagcagtgcaaagttactgttctatcagattctctgc
ttttatatttttgtttatttccaagtcatattgtaaaaaaggttttgata
ttcatttttattattccaattatgtgtgtgtatgtgaagatgcatgcaga
ttcccaaggatgtaagacctaacattctttcacctggatctgtagctaca
ggtggttgtgagcagcccaatgagagtgctggagactgaccccaggttcc
ctgtaagaaaggtaggtagatactgtgattcactgagccatttctacagc
tctctaggctatttcttgtatgtaaggtgatcgttttctaactaccctgc
cataagagaagaaaccaatattgttctgttgctctatacttctaaaacct
acaggtaaaaaaaggtacagtggttatatatgaaaaaattgggacaataa
agatttgggtttcaggaatggaatccagccatgtttcctaacctaaaaat
atggcagtgaatttgagatttcacaattggtagagatcaaaagaactttg
acaaataagataaatataatagctttctcttagtataaagtattaaatca
caaaaaatgtattgaactacagaggctaataactatgctagtaagactca
gaagtaattaaagatacatattcttgtcccatttcctattgtagagtttg
ataacacagaattgtcttttaatattgatgatattgaaatatttactctc
tactttgtttcttctctgtctcctgaaagaagttgactatacttcttggg
gctctttttttttaatatcagttttccacttgtaatgagtgaaccttctg
ctgccttacacatatttcttcaccataatgagatcttcagttcaatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103825519_103826622
seq2: B6Ng01-329C20.b_46_1145

seq1  GAATTCATTGTACAGTAGAGTGGACTATTTATTTTACCTATCAACAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTACAGTAGAGTGGACTATTTATTTTACCTATCAACAGAGA  50

seq1  CTGGGTGTGTCCTTAGTCAGTATTTTCTCATAAATCATTAATATACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTGTCCTTAGTCAGTATTTTCTCATAAATCATTAATATACATTT  100

seq1  GTTTTCTATGAGTCATTGAATTAATGATTTATGTTAGTCCCATTGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTATGAGTCATTGAATTAATGATTTATGTTAGTCCCATTGTCTTT  150

seq1  TCTCCATATTATTTTGTATAAATTGTTCGAATTATATAATCAGAAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATATTATTTTGTATAAATTGTTCGAATTATATAATCAGAAAATTC  200

seq1  ATTTTCACTTACTTTTTTTTCAAGGCCAAGAAATTTTACATTAATTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTTACTTTTTTTTCAAGGCCAAGAAATTTTACATTAATTCTTA  250

seq1  ATTTTTCTGTGTACCAGGAGAAACATTAATGATGAATCCACAATGGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGTGTACCAGGAGAAACATTAATGATGAATCCACAATGGCAAG  300

seq1  TATAAAATAGATTTACAAGTTTTGATAGACAATTATGAGGTAATCCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAGATTTACAAGTTTTGATAGACAATTATGAGGTAATCCATAT  350

seq1  AATTTCATTTAGAAAAAGTGTTTTTGAAATAGAATTTATTACCACTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTTAGAAAAAGTGTTTTTGAAATAGAATTTATTACCACTAGCC  400

seq1  ATTTTTATGATAAAAACATGTTGCTGAGAAAAAACATGGAAAAATAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGATAAAAACATGTTGCTGAGAAAAAACATGGAAAAATAAACA  450

seq1  ATTTAACTTGATAAAGATAGTCATATTGAAATTAAATTTGTTTATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTTGATAAAGATAGTCATATTGAAATTAAATTTGTTTATTTTTT  500

seq1  CTATTAGTAATGATGACCAAATTTTATTTTTTAGCATATAGGAGAATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGTAATGATGACCAAATTTTATTTTTTAGCATATAGGAGAATTTC  550

seq1  CAATTTCCATACCTCTAAACTGATCATTCAAAATAGGAGGACAAACAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCATACCTCTAAACTGATCATTCAAAATAGGAGGACAAACAAAT  600

seq1  AGAAAAATCATTACAATATTTTAATACGTCATATAAAGTTAGAACACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCATTACAATATTTTAATACGTCATATAAAGTTAGAACACAAG  650

seq1  CCAAGGGAAAATGTTCTTATAATCATTTCCAGATGTTGACTTCATACGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGAAAATGTTCTTATAATCATTTCCAGATGTTGACTTCATACGTG  700

seq1  TATGTTTTTCTGTAGAGAATATATTCATAAGCATTTTCTAAAATTCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTCTGTAGAGAATATATTCATAAGCATTTTCTAAAATTCAAAT  750

seq1  ATAAAATGAATCTATGTTTAGGAAAATGCTTAACTGCCTTATTTATTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGAATCTATGTTTAGGAAAATGCTTAACTGCCTTATTTATTTTG  800

seq1  TAGGGTAAATATTCAATGAATACTGACGTGAAGAATTGGAAAACAAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAAATATTCAATGAATACTGACGTGAAGAATTGGAAAACAAATAT  850

seq1  AAATTGTCTTACTTTTTAACTTTCTAAACTGAAAATAATATTTTGCATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCTTACTTTTTAACTTTCTAAACTGAAAATAATATTTTGCATAC  900

seq1  AATATATTGTGATTACAGTTTACCCTCCCTCTGCTCTTCCTGCTCCCCC-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATATATTGTGATTACAGTTTACCCTCCCTCTGCTCTTCCTGCTCCCCCT  950

seq1  TTCCTCTCCAGATTCACCTCATCTTTCTCATTAATAAATGGGAATCTAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCCAGATTCACCTCATCTTTCTCATTAATAAATGGGAATCTAAG  1000

seq1  AGATAATAATAAAGTATAACATAATAAAATAAAAATTAACAAGCCTGAAT  1049
      |||| |||||||||||||||||||||||   ||||||||||  |||| ||
seq2  AGAT-ATAATAAAGTATAACATAATAAA--TAAAATTAACAGCCCTG-AT  1046

seq1  AAGACAAAACAAACAGAAG-AAAAAGAGCCCCCAAAAGGCACAAGAAACA  1098
      ||||||||||||||||||| ||||||||| | ||||| |||| |||| ||
seq2  AAGACAAAACAAACAGAAGAAAAAAGAGCTCTCAAAA-GCAC-AGAATCA  1094

seq1  CATAGA  1104
      ||||||
seq2  CATAGA  1100


seq1: chr10_103966629_103967780
seq2: B6Ng01-329C20.g_63_1211 (reverse)

seq1  TCCATTG-ACTGAAGATCCTCCATTTAGTGAAG-AATATGTGTAA-GCAG  47
      ||||||| ||||||||| |||  | | |||||| ||||||||||| ||||
seq2  TCCATTGAACTGAAGAT-CTCATTATGGTGAAGAAATATGTGTAAGGCAG  49

seq1  CAGAA-GTTCACACAATACAAGTGGAAAACTGATAT--AAAAAAAAGAGC  94
      ||||| |||||| || ||||||||||||||||||||  ||||||||||||
seq2  CAGAAGGTTCACTCATTACAAGTGGAAAACTGATATTAAAAAAAAAGAGC  99

seq1  CCCAAGAAGGTATAGTCAAACTCTTTCAGGAAGACAGAGAAGAAACAAAG  144
      |||||||| ||||||||||  ||||||||| |||||||||||||||||||
seq2  CCCAAGAA-GTATAGTCAACTTCTTTCAGG-AGACAGAGAAGAAACAAAG  147

seq1  TTAAGAGAGTAAATATTTTCAAATATCATCAATATTTAAAAGACAATTCT  194
      |  |||||||||||||||   ||||||||||||| |||||||||||||||
seq2  T--AGAGAGTAAATATTT--CAATATCATCAATA-TTAAAAGACAATTCT  192

seq1  GTGTTATCAAACTCTACAATAGGAAATGGGACAAGAATATGTATCTTTAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATCAAACTCTACAATAGGAAATGGGACAAGAATATGTATCTTTAA  242

seq1  TTACTTCTGAGTCTTTACTAGCATAGTTATTAGCCTCTGTAGTTCAATAC  294
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTGAGTC-TTACTAGCATAGTTATTAGCCTCTGTAGTTCAATAC  291

seq1  ATTTTTTGTGATTTAATACTTTATACTAAGAGAAAGCTATTATATTTATC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTGATTTAATACTTTATACTAAGAGAAAGCTATTATATTTATC  341

seq1  TTATTTGTCAAAGTTCTTTTGATCTCTACCAATTGTGAAATCTCAAATTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTCAAAGTTCTTTTGATCTCTACCAATTGTGAAATCTCAAATTC  391

seq1  ACTGCCATATTTTTAGGTTAGGAAACATGGCTGGATTCCATTCCTGAAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATATTTTTAGGTTAGGAAACATGGCTGGATTCCATTCCTGAAAC  441

seq1  CCAAATCTTTATTGTCCCAATTTTTTCATATATAACCACTGTACCTTTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTTTATTGTCCCAATTTTTTCATATATAACCACTGTACCTTTTT  491

seq1  TTACCTGTAGGTTTTAGAAGTATAGAGCAACAGAACAATATTGGTTTCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTAGGTTTTAGAAGTATAGAGCAACAGAACAATATTGGTTTCTT  541

seq1  CTCTTATGGCAGGGTAGTTAGAAAACGATCACCTTACATACAAGAAATAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATGGCAGGGTAGTTAGAAAACGATCACCTTACATACAAGAAATAG  591

seq1  CCTAGAGAGCTGTAGAAATGGCTCAGTGAATCACAGTATCTACCTACCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAGCTGTAGAAATGGCTCAGTGAATCACAGTATCTACCTACCTT  641

seq1  TCTTACAGGGAACCTGGGGTCAGTCTCCAGCACTCTCATTGGGCTGCTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGGGAACCTGGGGTCAGTCTCCAGCACTCTCATTGGGCTGCTCA  691

seq1  CAACCACCTGTAGCTACAGATCCAGGTGAAAGAATGTTAGGTCTTACATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACCTGTAGCTACAGATCCAGGTGAAAGAATGTTAGGTCTTACATC  741

seq1  CTTGGGAATCTGCATGCATCTTCACATACACACACATAATTGGAATAATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAATCTGCATGCATCTTCACATACACACACATAATTGGAATAATA  791

seq1  AAAATGAATATCAAAACCTTTTTTACAATATGACTTGGAAATAAACAAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATATCAAAACCTTTTTTACAATATGACTTGGAAATAAACAAAA  841

seq1  ATATAAAAGCAGAGAATCTGATAGAACAGTAACTTTGCACTGCTTGGCCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAGCAGAGAATCTGATAGAACAGTAACTTTGCACTGCTTGGCCA  891

seq1  TGGGTGAGAAAGGGACTTGTAAAAGTCTAGTAAGTATGAATTGCACCCCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAGAAAGGGACTTGTAAAAGTCTAGTAAGTATGAATTGCACCCCA  941

seq1  AACCTTCATTTGAGTAGCGTATTTTTATTGAAATAATATCAGAAATCAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCATTTGAGTAGCGTATTTTTATTGAAATAATATCAGAAATCAAT  991

seq1  ATATGGATCATATGATGACATACAGGCAAACTTCCTTGTCATGATTTTAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATCATATGATGACATACAGGCAAACTTCCTTGTCATGATTTTAC  1041

seq1  CCATGTTTCTTCATGGGACTGGGGTAAAAATAGTTAAGTTAAAACATAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTCTTCATGGGACTGGGGTAAAAATAGTTAAGTTAAAACATAAT  1091

seq1  TTATATGCGTTGAACATAACAAACAGTATTTCTGAGAAGCAATTAAGAAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCGTTGAACATAACAAACAGTATTTCTGAGAAGCAATTAAGAAA  1141

seq1  GTGAATTC  1152
      ||||||||
seq2  GTGAATTC  1149


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